Wall clock time and date at job start Wed Apr 1 2020 00:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.53004 * 109.47044 * 119.99969 * 2 1 3 5 5 C 1.52999 * 109.46811 * 59.99929 * 4 2 1 6 6 C 1.52996 * 109.47176 * 300.00148 * 4 2 1 7 7 C 1.50702 * 109.46713 * 179.97438 * 4 2 1 8 8 O 1.21271 * 120.00033 * 359.97438 * 7 4 2 9 9 N 1.34776 * 119.99514 * 180.02562 * 7 4 2 10 10 C 1.46500 * 119.99541 * 180.02562 * 9 7 4 11 11 C 1.53004 * 109.46740 * 179.97438 * 10 9 7 12 12 C 1.53501 * 114.20620 * 184.99715 * 11 10 9 13 13 N 1.47065 * 87.98741 * 220.15007 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47048 * 119.99960 * 22 20 18 25 25 H 1.48504 * 109.47465 * 240.00413 * 22 20 18 26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11 27 27 H 1.09002 * 109.46975 * 300.00077 * 1 2 3 28 28 H 1.08999 * 109.47357 * 59.99405 * 1 2 3 29 29 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46847 * 239.99832 * 2 1 3 31 31 H 1.08997 * 109.47233 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47016 * 300.00545 * 3 2 1 33 33 H 1.09002 * 109.47280 * 60.00109 * 3 2 1 34 34 H 1.09002 * 109.47064 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.47529 * 299.99543 * 5 4 2 36 36 H 1.09002 * 109.47330 * 59.99971 * 5 4 2 37 37 H 1.09000 * 109.46982 * 299.99736 * 6 4 2 38 38 H 1.09000 * 109.47472 * 59.99519 * 6 4 2 39 39 H 1.08999 * 109.47190 * 180.02562 * 6 4 2 40 40 H 0.97004 * 120.00382 * 359.97438 * 9 7 4 41 41 H 1.09000 * 109.47448 * 60.00063 * 10 9 7 42 42 H 1.08992 * 109.47028 * 299.99605 * 10 9 7 43 43 H 1.09001 * 113.28594 * 318.06464 * 11 10 9 44 44 H 1.09001 * 113.46643 * 105.36708 * 12 11 10 45 45 H 1.09004 * 113.51834 * 334.94152 * 12 11 10 46 46 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 47 47 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 48 48 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 49 49 H 1.09001 * 113.47005 * 87.43764 * 26 13 12 50 50 H 1.09003 * 113.46723 * 217.87945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 -2.1637 1.2492 6 6 1.5300 -0.0001 2.4985 7 6 3.5471 -0.7218 1.2489 8 8 4.1534 -0.1974 0.3389 9 7 4.2209 -1.3059 2.2594 10 6 5.6859 -1.3059 2.2593 11 6 6.1959 -2.0273 3.5085 12 6 7.7207 -1.9860 3.6808 13 7 7.6561 -3.3855 4.1280 14 6 8.3908 -4.1836 4.9279 15 8 9.3821 -3.7478 5.4738 16 6 7.9810 -5.6177 5.1429 17 16 9.1594 -6.4213 6.2572 18 6 8.4584 -8.0361 6.3311 19 1 7.5598 -8.2607 5.7757 20 6 9.0644 -9.0214 7.0982 21 7 10.1626 -8.7493 7.7708 22 14 8.3208 -10.7332 7.1771 23 1 7.0964 -10.7801 6.3382 24 1 9.3047 -11.7241 6.6718 25 1 7.9705 -11.0564 8.5836 26 6 6.4406 -3.5327 3.3133 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.8937 -2.6777 2.1390 35 1 0.4400 -2.1638 1.2493 36 1 1.8933 -2.6776 0.3592 37 1 1.8934 1.0276 2.4985 38 1 0.4400 0.0000 2.4985 39 1 1.8937 -0.5136 3.3885 40 1 3.7359 -1.7257 2.9871 41 1 6.0493 -0.2783 2.2598 42 1 6.0491 -1.8193 1.3691 43 1 5.6373 -1.7751 4.4099 44 1 8.0512 -1.2967 4.4578 45 1 8.2609 -1.8544 2.7432 46 1 7.9716 -6.1403 4.1864 47 1 6.9846 -5.6487 5.5836 48 1 10.5861 -9.4378 8.3072 49 1 6.6425 -3.8090 2.2784 50 1 5.6805 -4.1612 3.7773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688663621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:45 Heat of formation + Delta-G solvation = -50.586564 kcal Electronic energy + Delta-G solvation = -27232.896817 eV Core-core repulsion = 23387.349259 eV Total energy + Delta-G solvation = -3845.547559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00300 -40.29264 -37.83729 -37.13119 -35.09704 -32.46210 -32.12030 -30.80737 -28.92502 -28.33709 -27.17043 -26.23080 -25.93248 -25.39101 -24.10154 -21.39048 -21.34816 -19.17540 -19.01371 -17.74561 -17.27957 -16.76225 -16.59863 -15.92389 -15.83500 -15.29549 -15.10038 -14.85490 -14.83460 -14.53977 -14.34010 -13.84391 -13.75368 -13.57771 -13.14606 -13.04959 -12.82867 -12.64269 -12.55448 -12.48726 -12.37764 -12.28059 -12.07367 -11.97034 -11.71759 -11.65080 -11.38587 -11.09649 -11.05161 -10.94503 -10.85958 -10.81835 -10.78643 -9.85035 -9.82884 -9.46320 -9.37504 -9.10567 -8.66903 -8.27227 -6.54149 -6.24782 -3.95898 2.31754 2.66647 2.78356 3.01522 3.19194 3.22141 3.28360 3.52345 3.90690 4.10752 4.16884 4.22818 4.34770 4.44358 4.56793 4.67977 4.76182 4.83649 4.89112 4.94001 5.05183 5.10205 5.10477 5.21987 5.24114 5.28210 5.30297 5.32955 5.34342 5.41408 5.45272 5.46021 5.51660 5.53980 5.56002 5.61726 5.74027 5.79549 5.84190 5.87557 5.96540 6.01810 6.05333 6.09679 6.23872 7.11962 7.56734 7.79678 7.89646 8.32245 8.48872 9.20501 10.82715 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.001809 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.113111 B =15474.260341 C =16654.379472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.070 4.070 3 C -0.161 4.161 4 C -0.078 4.078 5 C -0.145 4.145 6 C -0.146 4.146 7 C 0.523 3.477 8 O -0.534 6.534 9 N -0.728 5.728 10 C 0.132 3.868 11 C -0.141 4.141 12 C 0.116 3.884 13 N -0.654 5.654 14 C 0.562 3.438 15 O -0.513 6.513 16 C -0.144 4.144 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.106 3.894 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.401 0.599 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.086 0.914 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.535 18.499 -14.617 31.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 C -0.218 4.218 4 C -0.081 4.081 5 C -0.202 4.202 6 C -0.203 4.203 7 C 0.310 3.690 8 O -0.410 6.410 9 N -0.380 5.380 10 C 0.008 3.992 11 C -0.161 4.161 12 C -0.008 4.008 13 N -0.393 5.393 14 C 0.352 3.648 15 O -0.386 6.386 16 C -0.295 4.295 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.018 4.018 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.236 0.764 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.299 19.288 -14.170 30.745 hybrid contribution -1.801 -1.922 -0.241 2.645 sum -21.099 17.366 -14.411 30.894 Atomic orbital electron populations 1.21997 0.95017 1.01895 1.02008 1.20887 0.95164 0.96717 0.96130 1.22130 1.03808 0.94915 1.00966 1.20833 0.91236 0.97811 0.98217 1.21941 1.02237 0.93440 1.02580 1.21982 1.02215 1.00791 0.95307 1.20570 0.89791 0.77262 0.81396 1.90644 1.70322 1.44338 1.35717 1.46031 1.07192 1.59079 1.25708 1.21253 0.79636 1.01218 0.97132 1.23334 0.97547 0.96189 0.99011 1.22790 0.93514 0.84324 1.00183 1.49606 1.29464 1.13010 1.47171 1.19948 0.81448 0.86431 0.76962 1.90721 1.25040 1.74983 1.47885 1.23466 1.06185 0.93897 1.05905 1.85423 1.32720 1.08410 1.56821 1.22892 1.14539 0.96173 1.34737 0.90867 1.24999 0.94792 0.99188 0.94616 1.70025 1.17752 1.34185 1.28249 0.86107 0.78996 0.82258 0.78069 1.19617 1.20535 1.20525 1.23118 0.86919 0.95576 0.96154 0.92326 0.92526 0.92364 0.90686 0.89976 0.93139 0.93164 0.92031 0.90947 0.91966 0.91666 0.90985 0.92204 0.76397 0.90665 0.90709 0.87044 0.90073 0.89727 0.89327 0.89324 0.92188 0.89627 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.49 37.16 0.32 -0.42 16 2 C -0.07 -0.46 1.92 -90.61 -0.17 -0.64 16 3 C -0.16 -1.20 8.52 37.16 0.32 -0.88 16 4 C -0.08 -0.45 0.43 -155.66 -0.07 -0.52 16 5 C -0.14 -0.67 8.02 37.16 0.30 -0.37 16 6 C -0.15 -0.65 7.67 37.16 0.28 -0.37 16 7 C 0.52 4.23 6.19 -10.99 -0.07 4.16 16 8 O -0.53 -6.23 13.66 5.57 0.08 -6.15 16 9 N -0.73 -4.45 5.34 -60.30 -0.32 -4.77 16 10 C 0.13 0.87 5.59 -4.04 -0.02 0.85 16 11 C -0.14 -0.99 4.11 -89.96 -0.37 -1.36 16 12 C 0.12 1.17 8.19 -8.51 -0.07 1.10 16 13 N -0.65 -9.02 3.69 -185.05 -0.68 -9.70 16 14 C 0.56 10.88 8.10 -10.99 -0.09 10.79 16 15 O -0.51 -12.07 16.64 5.56 0.09 -11.98 16 16 C -0.14 -2.95 5.98 36.00 0.22 -2.74 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 22 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.11 0.95 8.00 -8.37 -0.07 0.89 16 27 H 0.06 0.25 6.43 -51.93 -0.33 -0.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.25 6.43 -51.93 -0.33 -0.09 16 30 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.08 0.81 5.51 -51.93 -0.29 0.52 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.33 6.43 -51.93 -0.33 -0.01 16 34 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16 35 H 0.07 0.27 6.43 -51.93 -0.33 -0.06 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 38 H 0.07 0.26 6.43 -51.93 -0.33 -0.07 16 39 H 0.06 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.40 1.64 7.31 -40.82 -0.30 1.35 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.55 7.81 -51.93 -0.41 0.15 16 43 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.09 0.69 7.88 -51.93 -0.41 0.28 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 408.00 15.07 6.15 6.15 Total: -1.00 -36.43 408.00 -8.87 -45.29 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -8.38 Total: -3.46 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 0.70 Total: -2.43 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.27 Total: -39.81 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.43 -8.87 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688663621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.295 kcal (2) G-P(sol) polarization free energy of solvation -36.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds