Wall clock time and date at job start Wed Apr 1 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 C 1.53002 * 115.55054 * 34.32527 * 3 2 1 5 5 C 1.52999 * 117.51529 * 248.62581 * 3 2 1 6 6 C 1.52998 * 60.00090 * 252.51456 * 5 3 2 7 7 H 1.09007 * 117.51268 * 107.47988 * 6 5 3 8 8 C 1.50698 * 117.50476 * 252.50963 * 6 5 3 9 9 O 1.21285 * 119.99686 * 68.61696 * 8 6 5 10 10 N 1.34775 * 120.00318 * 248.62447 * 8 6 5 11 11 C 1.46497 * 119.99734 * 359.97438 * 10 8 6 12 12 C 1.46499 * 120.00337 * 179.97438 * 10 8 6 13 13 C 1.53000 * 109.46840 * 89.99693 * 12 10 8 14 14 N 1.46499 * 109.46840 * 179.97438 * 13 12 10 15 15 C 1.46502 * 119.99658 * 90.00442 * 14 13 12 16 16 C 1.34775 * 120.00337 * 270.00307 * 14 13 12 17 17 O 1.21285 * 119.99996 * 359.97438 * 16 14 13 18 18 C 1.50698 * 120.00318 * 180.02562 * 16 14 13 19 19 S 1.81001 * 109.47250 * 179.97438 * 18 16 14 20 20 C 1.76202 * 99.99891 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99886 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99534 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99985 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47198 * 90.00098 * 24 22 20 26 26 H 1.48503 * 109.46794 * 209.99733 * 24 22 20 27 27 H 1.48498 * 109.46829 * 329.99481 * 24 22 20 28 28 H 1.08996 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47400 * 300.00645 * 1 2 3 30 30 H 1.09003 * 109.46867 * 60.00366 * 1 2 3 31 31 H 1.08994 * 109.47400 * 239.99355 * 2 1 3 32 32 H 1.09003 * 109.46867 * 119.99634 * 2 1 3 33 33 H 1.09001 * 109.46960 * 205.67049 * 4 3 2 34 34 H 1.09006 * 109.46881 * 325.67173 * 4 3 2 35 35 H 1.08998 * 109.46848 * 85.67065 * 4 3 2 36 36 H 1.09007 * 117.49540 * 145.02995 * 5 3 2 37 37 H 1.08994 * 117.49993 * 0.02562 * 5 3 2 38 38 H 1.09001 * 109.47791 * 270.00075 * 11 10 8 39 39 H 1.09006 * 109.47504 * 30.00356 * 11 10 8 40 40 H 1.09003 * 109.47379 * 149.99991 * 11 10 8 41 41 H 1.09001 * 109.46813 * 329.99967 * 12 10 8 42 42 H 1.08992 * 109.47397 * 210.00028 * 12 10 8 43 43 H 1.09002 * 109.47398 * 300.00326 * 13 12 10 44 44 H 1.09001 * 109.47194 * 60.00507 * 13 12 10 45 45 H 1.08996 * 109.47461 * 90.00011 * 15 14 13 46 46 H 1.08998 * 109.46888 * 209.99779 * 15 14 13 47 47 H 1.08994 * 109.47490 * 329.99842 * 15 14 13 48 48 H 1.09006 * 109.47054 * 299.99977 * 18 16 14 49 49 H 1.09003 * 109.47164 * 59.99309 * 18 16 14 50 50 H 0.97005 * 119.99323 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4447 0.7784 5 6 2.7419 1.9440 -1.2636 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7690 0.0001 8 6 4.0911 2.8376 0.7668 9 8 3.3287 3.5763 1.3534 10 7 5.4176 3.0733 0.8006 11 6 6.3385 2.1808 0.0924 12 6 5.9388 4.2221 1.5456 13 6 6.2355 3.8032 2.9868 14 7 6.7572 4.9518 3.7316 15 6 5.8368 5.8448 4.4399 16 6 8.0839 5.1870 3.7652 17 8 8.8459 4.4475 3.1793 18 6 8.6205 6.3682 4.5318 19 16 10.4242 6.4123 4.3873 20 6 10.7731 7.8479 5.3475 21 1 9.9663 8.3989 5.8078 22 6 12.0849 8.2701 5.5132 23 7 12.3455 9.3422 6.2309 24 14 13.4805 7.3167 4.7175 25 1 13.7393 7.8589 3.3596 26 1 14.7060 7.4498 5.5456 27 1 13.1055 5.8835 4.6152 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3352 3.4442 0.3703 34 1 0.1338 2.1704 0.6910 35 1 1.4776 2.4332 1.8283 36 1 2.5947 2.9881 -1.5403 37 1 2.8400 1.2465 -2.0953 38 1 6.6491 1.3760 0.7587 39 1 5.8373 1.7583 -0.7786 40 1 7.2143 2.7439 -0.2302 41 1 5.1981 5.0219 1.5448 42 1 6.8556 4.5755 1.0738 43 1 5.3187 3.4497 3.4586 44 1 6.9761 3.0034 2.9876 45 1 5.6906 5.4830 5.4576 46 1 6.2562 6.8504 4.4686 47 1 4.8788 5.8654 3.9206 48 1 8.2004 7.2875 4.1237 49 1 8.3426 6.2766 5.5818 50 1 13.2623 9.6375 6.3463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704875182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:58 Heat of formation + Delta-G solvation = -44.398939 kcal Electronic energy + Delta-G solvation = -27509.731566 eV Core-core repulsion = 23664.452323 eV Total energy + Delta-G solvation = -3845.279243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78031 -39.59087 -38.09201 -36.10253 -35.19042 -32.71235 -32.44491 -31.10845 -28.82108 -28.35970 -27.08640 -26.48148 -25.64094 -24.78850 -24.19565 -22.60819 -19.73192 -19.31876 -18.81538 -17.73354 -17.48292 -16.80345 -16.48157 -15.97098 -15.58313 -15.44544 -15.04048 -15.01290 -14.90730 -14.17437 -13.89758 -13.71123 -13.49846 -13.26387 -13.12877 -13.04299 -13.03317 -12.79079 -12.68287 -12.61349 -12.57072 -12.47661 -12.31722 -12.02835 -11.96476 -11.52720 -11.27621 -11.21345 -11.09337 -11.01842 -10.59905 -10.48412 -10.18369 -9.87206 -9.74098 -9.51353 -9.22140 -9.01053 -8.50991 -8.48148 -6.92919 -6.29471 -4.01326 2.18374 2.49321 2.80820 2.91831 3.24973 3.32208 3.39168 3.49372 3.60685 4.05250 4.24456 4.32178 4.36044 4.55542 4.61035 4.65134 4.83320 4.86617 4.88095 4.94265 4.98935 5.09354 5.11199 5.20174 5.21211 5.21526 5.29755 5.35453 5.42545 5.44580 5.45855 5.52802 5.54539 5.61971 5.66563 5.69944 5.72444 5.77192 5.84264 5.88219 5.90138 6.01129 6.12861 6.26057 6.56537 7.08551 7.41495 7.92183 7.93583 8.39624 8.41299 9.16671 10.79744 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.031173 B = 0.001872 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.002689 B =14951.822759 C =15509.236450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.146 4.146 6 C -0.190 4.190 7 H 0.122 0.878 8 C 0.543 3.457 9 O -0.532 6.532 10 N -0.610 5.610 11 C 0.077 3.923 12 C 0.101 3.899 13 C 0.107 3.893 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.203 -18.039 -14.201 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.184 4.184 6 C -0.211 4.211 7 H 0.140 0.860 8 C 0.332 3.668 9 O -0.409 6.409 10 N -0.344 5.344 11 C -0.066 4.066 12 C -0.022 4.022 13 C -0.017 4.017 14 N -0.356 5.356 15 C -0.066 4.066 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.272 4.272 19 S 0.082 5.918 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.331 -18.598 -14.664 32.551 hybrid contribution 0.128 0.699 0.491 0.864 sum -22.203 -17.898 -14.174 31.847 Atomic orbital electron populations 1.21828 0.95170 1.01538 1.02353 1.21098 0.96374 0.92948 1.02100 1.21620 0.90680 0.97118 0.99491 1.21465 0.97481 0.97175 1.00409 1.23203 1.01644 1.02874 0.90641 1.22383 0.96099 0.99250 1.03325 0.85967 1.19732 0.81548 0.85168 0.80385 1.90700 1.56278 1.48656 1.45288 1.47751 1.06235 1.28938 1.51454 1.21872 0.93898 0.94225 0.96600 1.21895 1.00120 0.88263 0.91967 1.21674 0.99730 0.89152 0.91191 1.47766 1.06389 1.28993 1.52448 1.21842 0.93697 0.94318 0.96693 1.20361 0.81188 0.86091 0.80427 1.90679 1.56292 1.48006 1.44365 1.23317 1.02546 0.98449 1.02842 1.84754 0.97920 1.39207 1.69872 1.22311 0.97134 1.11150 1.36263 0.89382 1.24712 0.98180 0.94386 0.94014 1.69942 1.20772 1.22887 1.38041 0.86732 0.82038 0.83044 0.80016 1.19230 1.19943 1.15945 0.92734 0.91907 0.92506 0.91683 0.91415 0.91835 0.92485 0.91466 0.88302 0.87884 0.92333 0.90823 0.90504 0.89720 0.89823 0.90530 0.89804 0.92465 0.90435 0.90960 0.88452 0.88449 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.92 37.16 0.33 -0.45 16 2 C -0.09 -0.50 6.12 -26.73 -0.16 -0.66 16 3 C -0.09 -0.65 2.47 -154.51 -0.38 -1.03 16 4 C -0.11 -0.95 7.73 37.16 0.29 -0.66 16 5 C -0.15 -0.96 9.53 -26.73 -0.25 -1.21 16 6 C -0.19 -1.45 4.52 -91.77 -0.41 -1.87 16 7 H 0.12 0.74 7.26 -51.93 -0.38 0.36 16 8 C 0.54 5.73 7.44 -10.99 -0.08 5.65 16 9 O -0.53 -7.04 12.68 5.55 0.07 -6.97 16 10 N -0.61 -6.08 2.87 -181.57 -0.52 -6.60 16 11 C 0.08 0.56 10.05 59.85 0.60 1.16 16 12 C 0.10 1.17 5.77 -4.04 -0.02 1.15 16 13 C 0.11 1.33 5.73 -4.04 -0.02 1.31 16 14 N -0.62 -8.62 2.87 -181.58 -0.52 -9.14 16 15 C 0.08 0.85 10.24 59.85 0.61 1.46 16 16 C 0.53 9.58 7.69 -10.99 -0.08 9.50 16 17 O -0.52 -10.96 15.44 5.55 0.09 -10.87 16 18 C -0.12 -2.37 4.71 36.00 0.17 -2.20 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 24 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.34 6.45 -51.93 -0.33 0.01 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.65 7.01 -51.93 -0.36 0.28 16 34 H 0.06 0.41 5.58 -51.93 -0.29 0.12 16 35 H 0.07 0.70 7.26 -51.93 -0.38 0.32 16 36 H 0.10 0.73 8.05 -51.92 -0.42 0.32 16 37 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 6.64 -51.93 -0.34 0.05 16 40 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 41 H 0.08 1.04 7.42 -51.93 -0.39 0.65 16 42 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 43 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 44 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 47 H 0.07 0.68 8.07 -51.93 -0.42 0.27 16 48 H 0.10 1.77 7.40 -51.91 -0.38 1.39 16 49 H 0.10 1.80 8.11 -51.91 -0.42 1.37 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -34.45 411.52 -8.42 -42.87 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.59 Total: -1.30 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.79 Total: 0.17 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.27 Total: -41.48 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.16 Total: -17.85 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.45 -8.42 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704875182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds