Wall clock time and date at job start Wed Apr 1 2020 00:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.52997 * 115.55177 * 325.58873 * 3 2 1 5 5 C 1.53001 * 117.51348 * 111.28905 * 3 2 1 6 6 C 1.52994 * 117.49675 * 179.91393 * 3 2 1 7 7 H 1.09001 * 117.49790 * 144.97602 * 6 3 2 8 8 C 1.50703 * 117.49849 * 359.97438 * 6 3 2 9 9 O 1.21282 * 120.00489 * 0.02562 * 8 6 3 10 10 N 1.34784 * 119.99807 * 179.97438 * 8 6 3 11 11 C 1.46497 * 120.00103 * 0.02562 * 10 8 6 12 12 C 1.46495 * 119.99820 * 180.02562 * 10 8 6 13 13 C 1.53001 * 109.47531 * 89.99857 * 12 10 8 14 14 N 1.46495 * 109.47531 * 179.97438 * 13 12 10 15 15 C 1.46504 * 120.00037 * 270.00234 * 14 13 12 16 16 C 1.34774 * 120.00206 * 90.00158 * 14 13 12 17 17 O 1.21284 * 119.99946 * 359.97438 * 16 14 13 18 18 C 1.50703 * 120.00218 * 180.02562 * 16 14 13 19 19 S 1.80995 * 109.46940 * 179.97438 * 18 16 14 20 20 C 1.76205 * 99.99763 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00210 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00018 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99981 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47174 * 60.00026 * 24 22 20 26 26 H 1.48499 * 109.47027 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47149 * 299.99973 * 24 22 20 28 28 H 1.08999 * 109.46533 * 299.99331 * 1 2 3 29 29 H 1.08991 * 109.47097 * 59.99286 * 1 2 3 30 30 H 1.08994 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46533 * 240.00669 * 2 1 3 32 32 H 1.08997 * 109.47494 * 120.00763 * 2 1 3 33 33 H 1.09002 * 109.47153 * 274.32690 * 4 3 2 34 34 H 1.09001 * 109.46832 * 154.32881 * 4 3 2 35 35 H 1.09004 * 109.47261 * 34.32862 * 4 3 2 36 36 H 1.08997 * 117.49845 * 214.96883 * 5 3 2 37 37 H 1.08999 * 117.50024 * 359.97438 * 5 3 2 38 38 H 1.08991 * 109.47117 * 90.00193 * 11 10 8 39 39 H 1.09003 * 109.46880 * 210.00143 * 11 10 8 40 40 H 1.09008 * 109.46938 * 329.99572 * 11 10 8 41 41 H 1.08998 * 109.47374 * 210.00144 * 12 10 8 42 42 H 1.09006 * 109.47237 * 330.00277 * 12 10 8 43 43 H 1.08998 * 109.47026 * 300.00500 * 13 12 10 44 44 H 1.08997 * 109.46836 * 59.99496 * 13 12 10 45 45 H 1.09000 * 109.47250 * 89.99761 * 15 14 13 46 46 H 1.08997 * 109.46816 * 209.99915 * 15 14 13 47 47 H 1.09001 * 109.46974 * 329.99945 * 15 14 13 48 48 H 1.09001 * 109.46616 * 299.99924 * 18 16 14 49 49 H 1.09000 * 109.47087 * 59.99569 * 18 16 14 50 50 H 0.97006 * 119.99405 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.1864 2.4443 -0.7801 5 6 2.7402 1.9447 1.2644 6 6 3.5550 1.6562 0.0020 7 1 3.9436 2.5102 -0.5527 8 6 4.4307 0.4297 0.0045 9 8 3.9283 -0.6742 0.0043 10 7 5.7723 0.5595 0.0058 11 6 6.3792 1.8928 0.0055 12 6 6.6235 -0.6328 0.0076 13 6 6.9214 -1.0491 -1.4342 14 7 7.7731 -2.2410 -1.4324 15 6 9.2313 -2.0993 -1.4311 16 6 7.2153 -3.4679 -1.4319 17 8 6.0082 -3.5852 -1.4325 18 6 8.0915 -4.6940 -1.4294 19 16 7.0539 -6.1770 -1.4285 20 6 8.3003 -7.4225 -1.4265 21 1 9.3434 -7.1426 -1.4257 22 6 7.9415 -8.7633 -1.4248 23 7 6.6702 -9.1044 -1.4252 24 14 9.2629 -10.0837 -1.4219 25 1 10.1069 -9.9366 -0.2090 26 1 8.6234 -11.4239 -1.4210 27 1 10.1088 -9.9402 -2.6340 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.4803 2.4324 -1.8296 34 1 1.3357 3.4440 -0.3722 35 1 0.1349 2.1702 -0.6941 36 1 2.5926 2.9888 1.5404 37 1 2.8372 1.2475 2.0966 38 1 6.5286 2.2242 1.0330 39 1 7.3403 1.8544 -0.5073 40 1 5.7202 2.5918 -0.5097 41 1 7.5584 -0.4110 0.5223 42 1 6.1097 -1.4453 0.5215 43 1 5.9865 -1.2708 -1.9489 44 1 7.4351 -0.2366 -1.9481 45 1 9.5920 -2.0633 -0.4031 46 1 9.6794 -2.9504 -1.9438 47 1 9.5073 -1.1788 -1.9454 48 1 8.7220 -4.6917 -2.3186 49 1 8.7197 -4.6899 -0.5386 50 1 6.4195 -10.0415 -1.4244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704875183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:02 Heat of formation + Delta-G solvation = -40.230793 kcal Electronic energy + Delta-G solvation = -27812.016481 eV Core-core repulsion = 23966.917982 eV Total energy + Delta-G solvation = -3845.098499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62385 -39.40393 -37.89745 -35.96067 -35.03846 -32.40752 -32.39326 -30.97941 -28.78408 -28.34820 -26.97281 -26.47023 -25.47960 -24.52861 -23.89763 -22.43621 -19.69125 -19.17827 -18.62945 -17.66550 -17.36772 -16.68973 -16.24110 -15.94970 -15.37127 -15.18322 -14.77532 -14.70931 -14.63118 -14.26057 -13.83454 -13.58951 -13.44847 -13.34111 -13.18294 -13.08841 -12.90058 -12.70458 -12.52242 -12.47070 -12.35546 -12.26603 -11.98073 -11.88918 -11.77187 -11.28247 -11.03181 -11.02684 -11.01276 -10.99406 -10.73346 -10.29356 -9.97481 -9.78209 -9.52284 -9.29503 -9.09130 -9.02509 -8.36716 -8.17469 -6.45778 -6.17667 -3.88205 2.38624 2.62816 3.08796 3.13728 3.25509 3.29188 3.32223 3.52627 3.68253 4.22133 4.23707 4.37125 4.49285 4.67018 4.76672 4.81979 4.86912 4.96025 5.05101 5.11836 5.16920 5.18817 5.23862 5.28645 5.30662 5.36871 5.38740 5.45214 5.46349 5.52724 5.57555 5.60169 5.66955 5.69511 5.79047 5.86944 5.92632 5.94973 5.98358 6.13059 6.16427 6.25454 6.28828 6.51260 6.69433 7.20665 7.56011 7.62487 8.13528 8.38362 8.63037 9.26997 10.89670 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.002271 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.541810 B =12324.385565 C =13800.418818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.088 4.088 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.189 4.189 7 H 0.122 0.878 8 C 0.536 3.464 9 O -0.510 6.510 10 N -0.616 5.616 11 C 0.080 3.920 12 C 0.102 3.898 13 C 0.108 3.892 14 N -0.625 5.625 15 C 0.081 3.919 16 C 0.528 3.472 17 O -0.502 6.502 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 29.415 3.058 29.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 C -0.088 4.088 4 C -0.180 4.180 5 C -0.184 4.184 6 C -0.210 4.210 7 H 0.139 0.861 8 C 0.324 3.676 9 O -0.384 6.384 10 N -0.351 5.351 11 C -0.063 4.063 12 C -0.022 4.022 13 C -0.017 4.017 14 N -0.363 5.363 15 C -0.062 4.062 16 C 0.316 3.684 17 O -0.375 6.375 18 C -0.299 4.299 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.854 28.471 3.053 28.893 hybrid contribution 2.739 -0.454 0.005 2.776 sum -1.115 28.017 3.058 28.206 Atomic orbital electron populations 1.21925 0.96444 1.01615 1.01179 1.21117 0.94229 0.92066 1.04208 1.21624 0.90262 0.97876 0.99058 1.21518 1.00119 0.96812 0.99528 1.23187 1.01728 1.02348 0.91145 1.22404 0.94124 0.98907 1.05605 0.86072 1.19778 0.81833 0.89900 0.76125 1.90828 1.72822 1.27138 1.47661 1.47754 1.05748 1.06927 1.74691 1.21801 0.99001 0.83653 1.01839 1.21858 0.94356 0.88082 0.97910 1.21670 0.96482 0.86799 0.96762 1.47809 1.06676 1.05529 1.76260 1.21777 0.79942 1.02823 1.01673 1.20407 0.88996 0.83617 0.75400 1.90760 1.14516 1.85577 1.46608 1.23553 1.03205 0.98568 1.04619 1.85474 1.09363 0.91868 1.96682 1.22820 0.93880 0.92649 1.59024 0.91028 1.24996 0.96107 0.97914 0.94598 1.70019 1.15431 1.18035 1.46753 0.86230 0.80764 0.79771 0.78756 1.19956 1.20821 1.19963 0.93098 0.92647 0.92633 0.90500 0.90900 0.92055 0.92546 0.90749 0.88010 0.88329 0.92584 0.91150 0.90959 0.90674 0.89075 0.89524 0.91140 0.92830 0.90543 0.91530 0.89320 0.89325 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.92 37.16 0.33 -1.17 16 2 C -0.08 -0.95 4.36 -26.72 -0.12 -1.06 16 3 C -0.09 -0.82 2.47 -154.51 -0.38 -1.20 16 4 C -0.12 -0.87 9.49 37.16 0.35 -0.51 16 5 C -0.15 -1.19 9.53 -26.73 -0.25 -1.44 16 6 C -0.19 -1.73 5.01 -91.78 -0.46 -2.19 16 7 H 0.12 0.81 6.44 -51.93 -0.33 0.48 16 8 C 0.54 6.82 7.44 -10.98 -0.08 6.74 16 9 O -0.51 -8.90 12.68 5.56 0.07 -8.83 16 10 N -0.62 -6.47 2.87 -181.57 -0.52 -7.00 16 11 C 0.08 0.47 10.27 59.85 0.61 1.09 16 12 C 0.10 1.25 5.73 -4.04 -0.02 1.22 16 13 C 0.11 1.40 5.77 -4.04 -0.02 1.38 16 14 N -0.63 -9.13 2.87 -181.57 -0.52 -9.66 16 15 C 0.08 0.83 10.29 59.85 0.62 1.44 16 16 C 0.53 10.57 7.69 -10.99 -0.08 10.49 16 17 O -0.50 -12.32 15.44 5.55 0.09 -12.23 16 18 C -0.15 -3.12 4.71 36.01 0.17 -2.96 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.54 -15.52 9.50 30.94 0.29 -15.23 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.69 13.22 55.49 0.73 -25.95 16 24 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 6.44 -51.93 -0.33 0.14 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.12 7.26 -51.93 -0.38 0.74 16 32 H 0.07 1.02 7.01 -51.93 -0.36 0.65 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 35 H 0.07 0.50 5.58 -51.93 -0.29 0.21 16 36 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 40 H 0.07 0.33 5.99 -51.92 -0.31 0.01 16 41 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 42 H 0.09 1.50 7.42 -51.93 -0.39 1.12 16 43 H 0.09 1.44 7.42 -51.93 -0.39 1.06 16 44 H 0.07 0.68 7.89 -51.93 -0.41 0.28 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 47 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 48 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 49 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 50 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 413.49 15.07 6.23 6.23 Total: -1.00 -37.62 413.49 -8.78 -46.40 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.48 Total: -0.35 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 0.86 Total: -1.37 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.31 Total: -42.60 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.16 Total: -21.07 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.62 -8.78 -46.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704875183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.169 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds