Wall clock time and date at job start Wed Apr 1 2020 00:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47096 * 2 1 4 4 C 1.50702 * 112.91033 * 314.41907 * 3 2 1 5 5 O 1.21281 * 119.99787 * 111.68009 * 4 3 2 6 6 N 1.34778 * 119.99985 * 291.68389 * 4 3 2 7 7 C 1.46500 * 120.00092 * 4.05169 * 6 4 3 8 8 C 1.46496 * 119.99621 * 184.05636 * 6 4 3 9 9 C 1.53003 * 109.47307 * 90.00064 * 8 6 4 10 10 N 1.46496 * 109.47307 * 179.97438 * 9 8 6 11 11 C 1.46501 * 119.99673 * 269.99542 * 10 9 8 12 12 C 1.34778 * 120.00337 * 89.99969 * 10 9 8 13 13 O 1.21276 * 120.00027 * 359.97438 * 12 10 9 14 14 C 1.50704 * 120.00095 * 180.02562 * 12 10 9 15 15 S 1.80991 * 109.47082 * 179.97438 * 14 12 10 16 16 C 1.76203 * 100.00079 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99903 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99869 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00369 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99659 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47436 * 59.99849 * 20 18 16 22 22 H 1.48498 * 109.47135 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46780 * 299.99683 * 20 18 16 24 24 C 1.53786 * 113.61208 * 183.17035 * 3 2 1 25 25 C 1.53784 * 87.07920 * 220.01933 * 24 3 2 26 26 C 1.53778 * 113.61435 * 85.67478 * 3 2 1 27 27 H 1.08994 * 109.47396 * 185.45010 * 1 2 3 28 28 H 1.09009 * 109.46465 * 305.45164 * 1 2 3 29 29 H 1.08996 * 109.47366 * 65.44356 * 1 2 3 30 30 H 1.09001 * 109.46596 * 240.00348 * 2 1 3 31 31 H 1.08989 * 109.47383 * 120.00379 * 2 1 3 32 32 H 1.09000 * 109.47091 * 84.59501 * 7 6 4 33 33 H 1.08999 * 109.47079 * 204.59470 * 7 6 4 34 34 H 1.09003 * 109.47020 * 324.59367 * 7 6 4 35 35 H 1.08998 * 109.46979 * 209.99644 * 8 6 4 36 36 H 1.08997 * 109.47477 * 329.99914 * 8 6 4 37 37 H 1.09001 * 109.47223 * 299.99906 * 9 8 6 38 38 H 1.09003 * 109.47389 * 59.99442 * 9 8 6 39 39 H 1.09005 * 109.46816 * 90.00315 * 11 10 9 40 40 H 1.09003 * 109.47231 * 210.00010 * 11 10 9 41 41 H 1.08996 * 109.47247 * 330.00227 * 11 10 9 42 42 H 1.09001 * 109.46975 * 299.99740 * 14 12 10 43 43 H 1.08997 * 109.46987 * 59.99565 * 14 12 10 44 44 H 0.96998 * 120.00451 * 180.02562 * 19 18 16 45 45 H 1.08998 * 113.61454 * 105.47244 * 24 3 2 46 46 H 1.08998 * 113.61550 * 334.56744 * 24 3 2 47 47 H 1.09004 * 113.61578 * 139.98078 * 25 24 3 48 48 H 1.08995 * 113.61557 * 270.88400 * 25 24 3 49 49 H 1.09003 * 113.61359 * 25.42998 * 26 3 2 50 50 H 1.09000 * 113.69220 * 254.53781 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3196 2.3195 -0.9915 5 8 0.5912 3.2064 -0.5994 6 7 1.4846 2.1180 -2.3138 7 6 2.2931 0.9921 -2.7880 8 6 0.8556 3.0251 -3.2770 9 6 1.8121 4.1767 -3.5929 10 7 1.1833 5.0835 -4.5565 11 6 1.3632 4.8642 -5.9938 12 6 0.4394 6.1194 -4.1208 13 8 0.2901 6.3007 -2.9310 14 6 -0.2079 7.0519 -5.1122 15 16 -1.1321 8.3297 -4.2240 16 6 -1.7650 9.2518 -5.5855 17 1 -1.5329 8.9504 -6.5963 18 6 -2.5619 10.3655 -5.3590 19 7 -2.8452 10.7325 -4.1271 20 14 -3.2334 11.3426 -6.8025 21 1 -4.0801 10.4612 -7.6459 22 1 -4.0484 12.4762 -6.2967 23 1 -2.1049 11.8676 -7.6126 24 6 3.5718 1.5543 -0.0779 25 6 3.4610 2.7032 0.9382 26 6 2.1452 2.0587 1.4050 27 1 -0.3634 -1.0229 0.0976 28 1 -0.3632 0.5961 0.8372 29 1 -0.3634 0.4271 -0.9347 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 1.6770 0.0938 -2.8278 33 1 2.6765 1.2141 -3.7839 34 1 3.1272 0.8307 -2.1052 35 1 0.6273 2.4807 -4.1932 36 1 -0.0656 3.4241 -2.8523 37 1 2.0404 4.7212 -2.6767 38 1 2.7333 3.7778 -4.0176 39 1 0.5704 4.2143 -6.3642 40 1 1.3224 5.8206 -6.5152 41 1 2.3307 4.3946 -6.1714 42 1 0.5613 7.5200 -5.7264 43 1 -0.8890 6.4883 -5.7498 44 1 -3.4024 11.5106 -3.9688 45 1 3.9375 1.8694 -1.0552 46 1 4.0937 0.6787 0.3082 47 1 4.2448 2.6934 1.6957 48 1 3.3284 3.6822 0.4776 49 1 2.2770 1.3210 2.1966 50 1 1.3596 2.7811 1.6263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704875196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:22 Heat of formation + Delta-G solvation = -44.390848 kcal Electronic energy + Delta-G solvation = -28446.879735 eV Core-core repulsion = 24601.600843 eV Total energy + Delta-G solvation = -3845.278892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24762 -39.44361 -37.84227 -36.09737 -35.06456 -33.07141 -32.39458 -30.99297 -28.65957 -27.10832 -26.85070 -26.04108 -25.72213 -25.42518 -23.68831 -22.11737 -20.91088 -19.19550 -18.67909 -17.63711 -16.79311 -16.56005 -16.40222 -16.08434 -15.66052 -15.47838 -14.97974 -14.77645 -14.75286 -14.36226 -13.82261 -13.57712 -13.39665 -13.30151 -13.16859 -12.96079 -12.89250 -12.73767 -12.53951 -12.51466 -12.44444 -12.25525 -12.14869 -11.85399 -11.78920 -11.30662 -11.11021 -11.02400 -11.01350 -10.99103 -10.73434 -10.44337 -10.39433 -9.78965 -9.73821 -9.30877 -9.09469 -9.02589 -8.37780 -8.17574 -6.45909 -6.17650 -3.88278 2.51352 2.63958 3.08811 3.13694 3.25501 3.29321 3.32416 3.67235 4.06032 4.16639 4.23597 4.26820 4.51880 4.60136 4.76293 4.79046 4.90515 4.95135 5.03110 5.05263 5.10731 5.15433 5.16904 5.20018 5.25654 5.32749 5.35905 5.44585 5.45043 5.47200 5.59034 5.62259 5.63857 5.67806 5.72707 5.84922 5.88859 5.92952 5.93702 5.97977 6.00535 6.12787 6.16125 6.28979 6.68609 7.20426 7.55079 7.62379 8.11459 8.38293 8.62181 9.26962 10.89687 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.002256 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.071968 B =12407.180002 C =12932.673376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 C -0.106 4.106 4 C 0.537 3.463 5 O -0.514 6.514 6 N -0.615 5.615 7 C 0.069 3.931 8 C 0.100 3.900 9 C 0.108 3.892 10 N -0.625 5.625 11 C 0.081 3.919 12 C 0.528 3.472 13 O -0.503 6.503 14 C -0.149 4.149 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.119 4.119 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.513 -26.256 2.496 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.109 4.109 4 C 0.324 3.676 5 O -0.387 6.387 6 N -0.350 5.350 7 C -0.074 4.074 8 C -0.024 4.024 9 C -0.017 4.017 10 N -0.363 5.363 11 C -0.062 4.062 12 C 0.316 3.684 13 O -0.375 6.375 14 C -0.299 4.299 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.168 4.168 25 C -0.181 4.181 26 C -0.157 4.157 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.784 -25.354 4.597 29.707 hybrid contribution -0.215 0.257 -2.608 2.630 sum 14.569 -25.097 1.989 29.087 Atomic orbital electron populations 1.21793 0.95273 1.01701 1.02585 1.21529 0.96577 0.93329 1.02656 1.22025 0.96232 0.95904 0.96782 1.19939 0.81385 0.83948 0.82283 1.90809 1.37002 1.32561 1.78342 1.47682 1.52240 1.29335 1.05698 1.22098 0.95611 0.88826 1.00897 1.21880 0.97870 0.90664 0.91984 1.21669 0.94800 0.90839 0.94386 1.47805 1.52922 1.28896 1.06630 1.21778 1.01175 1.02604 0.80651 1.20412 0.77867 0.80319 0.89810 1.90757 1.58445 1.71420 1.16882 1.23551 1.03102 1.01496 1.01796 1.85477 1.61050 1.26398 1.10460 1.22818 1.36894 1.15191 0.93476 0.91028 1.24994 0.95506 0.96514 0.96584 1.70010 1.35546 1.25469 1.19211 0.86231 0.78877 0.79094 0.81325 1.19955 1.20822 1.19964 1.23123 0.93422 0.99841 1.00368 1.22859 0.97988 0.98318 0.98903 1.22883 0.98691 1.00152 0.93934 0.92465 0.92092 0.92807 0.91239 0.90872 0.92559 0.91031 0.90166 0.90630 0.89021 0.89656 0.91088 0.92824 0.90533 0.91523 0.89309 0.89312 0.92134 0.90731 0.89043 0.91019 0.89880 0.89472 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.33 37.16 0.35 -1.00 16 2 C -0.10 -0.71 5.14 -26.73 -0.14 -0.85 16 3 C -0.11 -0.95 0.39 -154.85 -0.06 -1.01 16 4 C 0.54 6.84 4.85 -10.98 -0.05 6.78 16 5 O -0.51 -9.33 15.54 5.56 0.09 -9.24 16 6 N -0.61 -6.40 2.87 -181.57 -0.52 -6.92 16 7 C 0.07 0.41 8.84 59.85 0.53 0.94 16 8 C 0.10 1.22 5.74 -4.04 -0.02 1.20 16 9 C 0.11 1.39 5.77 -4.04 -0.02 1.36 16 10 N -0.63 -9.07 2.87 -181.57 -0.52 -9.60 16 11 C 0.08 0.82 10.29 59.85 0.62 1.44 16 12 C 0.53 10.56 7.69 -10.98 -0.08 10.48 16 13 O -0.50 -12.33 15.44 5.56 0.09 -12.25 16 14 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 16 C -0.54 -15.52 9.50 30.94 0.29 -15.23 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.70 13.22 55.49 0.73 -25.96 16 20 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.13 -0.90 5.94 -25.91 -0.15 -1.05 16 25 C -0.14 -1.27 7.80 -25.92 -0.20 -1.47 16 26 C -0.12 -1.13 7.10 -25.92 -0.18 -1.31 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.05 0.56 7.34 -51.93 -0.38 0.17 16 30 H 0.07 0.37 6.02 -51.93 -0.31 0.06 16 31 H 0.07 0.41 7.88 -51.94 -0.41 0.00 16 32 H 0.06 0.29 7.40 -51.93 -0.38 -0.10 16 33 H 0.07 0.32 8.03 -51.93 -0.42 -0.10 16 34 H 0.08 0.39 4.15 -51.93 -0.22 0.17 16 35 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.09 1.53 7.37 -51.93 -0.38 1.14 16 37 H 0.09 1.40 7.42 -51.93 -0.39 1.02 16 38 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 41 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 42 H 0.09 1.71 7.40 -51.92 -0.38 1.32 16 43 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 44 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.07 0.50 6.40 -51.93 -0.33 0.16 16 46 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.09 0.64 7.92 -51.93 -0.41 0.22 16 50 H 0.08 1.04 7.36 -51.93 -0.38 0.66 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -38.01 407.98 -8.76 -46.77 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.47 Total: -1.07 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 0.94 Total: -0.64 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.31 Total: -42.48 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.01 -8.76 -46.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704875196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.381 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds