Wall clock time and date at job start Wed Apr 1 2020 01:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99834 * 2 1 4 4 C 1.50694 * 120.00045 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47452 * 94.99914 * 4 2 1 6 6 N 1.46900 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.46853 * 110.99782 * 170.00041 * 6 5 4 8 8 C 1.53032 * 109.52322 * 185.83848 * 7 6 5 9 9 C 1.53117 * 109.28126 * 300.82415 * 8 7 6 10 10 C 1.53000 * 109.52529 * 177.55903 * 9 8 7 11 11 O 1.42904 * 109.47193 * 174.71206 * 10 9 8 12 12 N 1.46506 * 109.52017 * 297.68514 * 9 8 7 13 13 C 1.34771 * 119.99520 * 297.33736 * 12 9 8 14 14 O 1.21277 * 120.00609 * 5.12521 * 13 12 9 15 15 C 1.50706 * 119.99642 * 185.12113 * 13 12 9 16 16 S 1.80998 * 109.47375 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00444 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99613 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31638 * 119.99633 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00320 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47068 * 89.99704 * 21 19 17 23 23 H 1.48498 * 109.47040 * 210.00125 * 21 19 17 24 24 H 1.48502 * 109.46844 * 329.99979 * 21 19 17 25 25 C 1.53115 * 109.21394 * 57.61916 * 9 8 7 26 26 C 1.46847 * 110.99879 * 294.21018 * 6 5 4 27 27 H 1.08003 * 120.00267 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00161 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47455 * 270.00203 * 3 2 1 30 30 H 1.09000 * 109.47182 * 29.99942 * 3 2 1 31 31 H 1.08994 * 109.47334 * 149.99898 * 3 2 1 32 32 H 1.08999 * 109.47519 * 334.99521 * 4 2 1 33 33 H 1.09004 * 109.46715 * 214.99741 * 4 2 1 34 34 H 1.09003 * 109.46861 * 59.99783 * 5 4 2 35 35 H 1.08994 * 109.46908 * 300.00215 * 5 4 2 36 36 H 1.09004 * 109.46257 * 65.82431 * 7 6 5 37 37 H 1.08994 * 109.45974 * 305.85977 * 7 6 5 38 38 H 1.08994 * 109.50861 * 180.87914 * 8 7 6 39 39 H 1.09004 * 109.50013 * 60.75899 * 8 7 6 40 40 H 1.08995 * 109.47432 * 54.70946 * 10 9 8 41 41 H 1.09004 * 109.46832 * 294.70946 * 10 9 8 42 42 H 0.96700 * 113.99814 * 179.97438 * 11 10 9 43 43 H 0.97001 * 119.99928 * 117.34085 * 12 9 8 44 44 H 1.09003 * 109.47057 * 300.00521 * 15 13 12 45 45 H 1.09007 * 109.47094 * 60.00356 * 15 13 12 46 46 H 0.96998 * 119.99986 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.50567 * 62.32245 * 25 9 8 48 48 H 1.09008 * 109.50788 * 182.43729 * 25 9 8 49 49 H 1.09003 * 109.46568 * 294.17386 * 26 6 5 50 50 H 1.08996 * 109.46399 * 54.14829 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 7 3.1624 -2.9552 -1.4382 7 6 3.3221 -3.4702 -2.8041 8 6 3.9603 -4.8602 -2.7552 9 6 5.3225 -4.7670 -2.0623 10 6 5.9388 -6.1634 -1.9560 11 8 7.2603 -6.0615 -1.4220 12 7 6.2093 -3.8986 -2.8406 13 6 6.5568 -4.2424 -4.0966 14 8 6.0634 -5.2209 -4.6161 15 6 7.5587 -3.4108 -4.8555 16 16 7.8125 -4.1236 -6.4997 17 6 8.9923 -2.9866 -7.1475 18 1 9.3314 -2.1578 -6.5438 19 6 9.4865 -3.1566 -8.4333 20 7 10.3683 -2.3073 -8.9170 21 14 8.9005 -4.5904 -9.4773 22 1 7.7062 -4.1787 -10.2579 23 1 9.9829 -5.0003 -10.4077 24 1 8.5464 -5.7321 -8.5962 25 6 5.1355 -4.1821 -0.6597 26 6 4.4618 -2.8122 -0.7692 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2451 1.6199 -1.0276 30 1 1.4743 2.0648 0.5138 31 1 3.0158 1.1749 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5889 34 1 3.0523 -0.9027 -1.8717 35 1 1.5167 -1.7893 -2.0272 36 1 3.9623 -2.7965 -3.3737 37 1 2.3457 -3.5354 -3.2841 38 1 4.0931 -5.2357 -3.7698 39 1 3.3140 -5.5379 -2.1974 40 1 5.9808 -6.6183 -2.9456 41 1 5.3276 -6.7811 -1.2978 42 1 7.7124 -6.9109 -1.3263 43 1 6.5463 -3.0762 -2.4520 44 1 7.1840 -2.3921 -4.9554 45 1 8.5049 -3.3985 -4.3145 46 1 10.7141 -2.4262 -9.8155 47 1 4.5082 -4.8488 -0.0680 48 1 6.1073 -4.0733 -0.1781 49 1 5.0967 -2.1417 -1.3483 50 1 4.3131 -2.3998 0.2287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725035363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:33 Heat of formation + Delta-G solvation = -72.102513 kcal Electronic energy + Delta-G solvation = -28460.447761 eV Core-core repulsion = 24613.967201 eV Total energy + Delta-G solvation = -3846.480560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67035 -38.52507 -37.11315 -36.30020 -34.50946 -32.43568 -32.16801 -31.13573 -29.88469 -28.52944 -27.58911 -26.53071 -25.60152 -23.86986 -22.85972 -21.68896 -20.82338 -19.10308 -18.68528 -17.91618 -17.30977 -16.67829 -16.13346 -15.92491 -15.54281 -15.19390 -14.99378 -14.92731 -14.68039 -14.44995 -14.18948 -13.93164 -13.80989 -13.45213 -13.25990 -13.22766 -13.17374 -12.78774 -12.53216 -12.27562 -12.11035 -12.00207 -11.88231 -11.76980 -11.37574 -11.28001 -11.25924 -11.07243 -11.01169 -10.79032 -10.57782 -10.49376 -10.06108 -9.84658 -9.36932 -9.18713 -9.00446 -8.90042 -8.49308 -8.48433 -6.90006 -6.28426 -3.99527 1.88103 2.78669 3.02694 3.31041 3.34274 3.49892 3.61809 3.69673 4.10754 4.33148 4.45467 4.53781 4.57294 4.63660 4.76209 4.78703 4.93220 5.05385 5.10295 5.10634 5.14012 5.16852 5.22653 5.31377 5.33587 5.34176 5.40393 5.46851 5.56905 5.60252 5.61335 5.64774 5.66467 5.76551 5.78390 5.80683 5.86501 5.93198 5.97425 6.05581 6.16951 6.31397 6.53375 6.68752 6.84324 6.87975 7.59544 7.71555 7.94827 8.42551 8.56523 9.17788 10.80957 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.002640 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.843127 B =10605.503044 C =11904.833205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.082 4.082 5 C 0.062 3.938 6 N -0.538 5.538 7 C 0.062 3.938 8 C -0.127 4.127 9 C 0.187 3.813 10 C 0.063 3.937 11 O -0.567 6.567 12 N -0.718 5.718 13 C 0.539 3.461 14 O -0.522 6.522 15 C -0.124 4.124 16 S -0.140 6.140 17 C -0.520 4.520 18 H 0.087 0.913 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C -0.113 4.113 26 C 0.051 3.949 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.377 0.623 43 H 0.397 0.603 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.270 0.730 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.034 0.966 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.738 0.022 21.885 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.120 4.120 5 C -0.066 4.066 6 N -0.263 5.263 7 C -0.066 4.066 8 C -0.166 4.166 9 C 0.100 3.900 10 C -0.015 4.015 11 O -0.371 6.371 12 N -0.372 5.372 13 C 0.325 3.675 14 O -0.397 6.397 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.668 4.668 18 H 0.105 0.895 19 C -0.114 4.114 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.152 4.152 26 C -0.077 4.077 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.223 0.777 43 H 0.231 0.769 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.052 0.948 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.850 -1.264 21.135 27.693 hybrid contribution 1.291 1.151 -0.324 1.760 sum -16.560 -0.113 20.811 26.596 Atomic orbital electron populations 1.23706 0.95247 1.01846 1.02544 1.21750 0.95457 0.95711 0.99571 1.20884 1.00122 0.94561 1.02218 1.20710 1.00178 0.94197 0.96872 1.22034 0.98253 0.89795 0.96524 1.61994 1.18741 1.27310 1.18225 1.21994 1.00367 0.95832 0.88392 1.21983 0.94123 0.97128 1.03335 1.20308 0.89331 0.89294 0.91056 1.22608 0.83631 0.96384 0.98922 1.86435 1.28624 1.35259 1.86807 1.45930 1.50819 1.25801 1.14657 1.20132 0.81415 0.85101 0.80813 1.90605 1.53642 1.27577 1.67891 1.23284 1.00584 1.02362 1.01242 1.84705 1.57413 1.40336 1.08951 1.22327 1.27232 1.13851 1.03399 0.89482 1.24722 0.93738 0.96197 0.96725 1.69944 1.28721 1.35890 1.17231 0.86723 0.79226 0.84118 0.81700 1.19255 1.19983 1.15938 1.21821 1.01242 0.96697 0.95394 1.22163 0.89406 0.96785 0.99343 0.88413 0.88620 0.91412 0.91918 0.91886 0.90493 0.91229 0.94697 0.90706 0.94347 0.90652 0.88592 0.90562 0.91126 0.93496 0.77660 0.76909 0.88995 0.88552 0.91971 0.89860 0.90078 0.94766 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 13.89 29.02 0.40 -0.97 16 2 C -0.12 -0.91 5.31 -101.07 -0.54 -1.45 16 3 C -0.12 -0.79 10.03 36.01 0.36 -0.43 16 4 C -0.08 -0.61 5.31 -27.89 -0.15 -0.76 16 5 C 0.06 0.53 4.94 -3.82 -0.02 0.51 16 6 N -0.54 -5.03 4.66 -234.66 -1.09 -6.12 16 7 C 0.06 0.67 5.31 -3.83 -0.02 0.65 16 8 C -0.13 -1.48 4.75 -26.65 -0.13 -1.60 16 9 C 0.19 2.14 0.44 -131.70 -0.06 2.08 16 10 C 0.06 0.75 5.59 37.16 0.21 0.96 16 11 O -0.57 -6.77 13.02 -35.23 -0.46 -7.23 16 12 N -0.72 -9.47 3.95 -47.49 -0.19 -9.65 16 13 C 0.54 9.41 7.26 -10.99 -0.08 9.33 16 14 O -0.52 -10.48 12.16 5.56 0.07 -10.41 16 15 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 16 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 21 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.59 16 25 C -0.11 -1.04 4.81 -26.65 -0.13 -1.17 16 26 C 0.05 0.44 5.13 -3.83 -0.02 0.42 16 27 H 0.10 0.65 7.99 -52.48 -0.42 0.23 16 28 H 0.10 0.59 8.04 -52.49 -0.42 0.17 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.08 0.59 7.99 -51.93 -0.41 0.18 16 33 H 0.07 0.50 6.38 -51.93 -0.33 0.16 16 34 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.07 0.66 7.99 -51.93 -0.41 0.24 16 36 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 37 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 38 H 0.10 1.38 6.15 -51.93 -0.32 1.06 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.38 3.11 9.12 45.56 0.42 3.53 16 43 H 0.40 4.57 7.41 -40.82 -0.30 4.27 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.76 7.91 -51.92 -0.41 0.35 16 49 H 0.03 0.32 6.97 -51.93 -0.36 -0.05 16 50 H 0.08 0.60 6.21 -51.93 -0.32 0.28 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -33.32 403.11 -9.08 -42.40 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.82 Total: 6.05 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 0.27 Total: -6.73 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.51 Total: -41.75 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.39 Total: -17.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.32 -9.08 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725035363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.703 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds