Wall clock time and date at job start Wed Apr 1 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46951 * 2 1 4 4 C 1.53005 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.05298 * 306.34314 * 4 3 2 6 6 C 1.54370 * 110.04989 * 67.82035 * 4 3 2 7 7 C 1.54882 * 104.19864 * 142.91170 * 6 4 3 8 8 C 1.54889 * 102.74691 * 322.03035 * 7 6 4 9 9 C 1.53871 * 110.03327 * 184.93312 * 4 3 2 10 10 H 1.08994 * 110.03726 * 121.37996 * 9 4 3 11 11 C 1.50702 * 110.03192 * 359.97438 * 9 4 3 12 12 O 1.21282 * 120.00024 * 274.99702 * 11 9 4 13 13 N 1.34775 * 119.99895 * 95.00029 * 11 9 4 14 14 C 1.46504 * 120.00256 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47250 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.46747 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99462 * 179.97438 * 16 15 14 18 18 O 1.21272 * 120.00318 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99679 * 179.97438 * 17 16 15 20 20 S 1.81000 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.76196 * 100.00053 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00243 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99964 * 179.72286 * 21 20 19 24 24 N 1.31630 * 119.99947 * 0.27822 * 23 21 20 25 25 Si 1.86797 * 119.99906 * 180.27352 * 23 21 20 26 26 H 1.48502 * 109.47307 * 90.00572 * 25 23 21 27 27 H 1.48501 * 109.47250 * 210.00199 * 25 23 21 28 28 H 1.48497 * 109.47466 * 330.00072 * 25 23 21 29 29 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47230 * 299.99934 * 1 2 3 31 31 H 1.08994 * 109.47793 * 60.00218 * 1 2 3 32 32 H 1.09001 * 109.47230 * 240.00066 * 2 1 3 33 33 H 1.09004 * 109.47738 * 119.99733 * 2 1 3 34 34 H 1.08996 * 109.47573 * 60.00505 * 3 2 1 35 35 H 1.09003 * 109.47075 * 299.99715 * 3 2 1 36 36 H 1.08994 * 110.51077 * 24.21569 * 6 4 3 37 37 H 1.09005 * 110.46084 * 261.58270 * 6 4 3 38 38 H 1.09001 * 110.75651 * 203.71663 * 7 6 4 39 39 H 1.09001 * 110.75582 * 80.34444 * 7 6 4 40 40 H 1.09006 * 110.48669 * 279.25945 * 8 7 6 41 41 H 1.09000 * 110.59852 * 156.67910 * 8 7 6 42 42 H 0.97000 * 120.00347 * 359.97438 * 13 11 9 43 43 H 1.09000 * 109.47133 * 59.99197 * 14 13 11 44 44 H 1.09005 * 109.46708 * 299.99567 * 14 13 11 45 45 H 1.08997 * 109.46797 * 59.99694 * 15 14 13 46 46 H 1.08998 * 109.46433 * 299.99655 * 15 14 13 47 47 H 0.97001 * 120.00485 * 359.97438 * 16 15 14 48 48 H 1.09009 * 109.46573 * 60.00508 * 19 17 16 49 49 H 1.08998 * 109.47531 * 300.00892 * 19 17 16 50 50 H 0.96996 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9441 0.8357 0.8239 6 6 4.0986 0.8953 -1.3438 7 6 5.3539 1.7542 -1.6362 8 6 4.9276 3.1604 -1.1463 9 6 4.0970 2.8828 0.1237 10 1 4.7263 2.9751 1.0088 11 6 2.9437 3.8492 0.2071 12 8 2.4207 4.2583 -0.8078 13 7 2.4935 4.2589 1.4095 14 6 1.3719 5.1980 1.4907 15 6 1.0622 5.4969 2.9589 16 7 -0.0589 6.4364 3.0400 17 6 -0.5097 6.8454 4.2425 18 8 0.0130 6.4360 5.2574 19 6 -1.6626 7.8123 4.3259 20 16 -2.0291 8.1658 6.0628 21 6 -3.3754 9.2860 5.8697 22 1 -3.7220 9.5483 4.8810 23 6 -3.9945 9.8264 6.9882 24 7 -3.5724 9.5062 8.1932 25 14 -5.4267 11.0080 6.7835 26 1 -6.6994 10.2432 6.7558 27 1 -5.4475 11.9624 7.9210 28 1 -5.2720 11.7578 5.5111 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.3546 1.0272 -2.1293 37 1 4.3698 -0.1560 -1.2467 38 1 5.5729 1.7671 -2.7039 39 1 6.2111 1.3910 -1.0693 40 1 4.3175 3.6582 -1.9000 41 1 5.8026 3.7641 -0.9055 42 1 2.9115 3.9315 2.2213 43 1 0.4945 4.7578 1.0169 44 1 1.6353 6.1236 0.9788 45 1 1.9396 5.9369 3.4330 46 1 0.7987 4.5711 3.4703 47 1 -0.4768 6.7641 2.2283 48 1 -2.5401 7.3731 3.8512 49 1 -1.3982 8.7380 3.8150 50 1 -4.0049 9.8842 8.9748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736674021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:27 Heat of formation + Delta-G solvation = -110.124055 kcal Electronic energy + Delta-G solvation = -26918.309093 eV Core-core repulsion = 23070.179795 eV Total energy + Delta-G solvation = -3848.129298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89675 -39.27415 -38.01455 -35.93275 -34.80258 -33.97069 -32.44475 -30.84363 -30.04329 -29.55119 -27.77076 -25.54655 -25.45487 -23.25865 -22.08620 -21.91152 -20.88879 -20.44736 -19.62898 -17.90844 -17.32808 -16.70121 -16.38820 -16.04964 -15.96707 -15.55528 -15.40096 -14.98692 -14.88402 -14.81474 -14.19831 -13.97066 -13.91171 -13.87093 -13.31915 -13.19777 -12.85427 -12.58780 -12.42333 -12.31318 -12.17266 -12.01022 -11.75216 -11.62617 -11.48657 -11.27500 -11.15827 -11.07503 -11.04022 -11.02828 -10.83401 -10.78334 -10.77390 -10.07505 -9.83707 -9.50197 -9.42919 -9.09373 -9.01042 -8.26642 -6.52423 -6.23375 -3.94222 2.32496 2.57033 3.01872 3.12295 3.21620 3.28060 3.34411 3.74317 4.00038 4.11230 4.18753 4.19825 4.39914 4.58341 4.67223 4.80018 4.81309 4.83194 4.96097 5.01580 5.09473 5.10385 5.12022 5.13930 5.18600 5.20956 5.28122 5.44213 5.50408 5.50827 5.54878 5.56638 5.61729 5.68196 5.72569 5.73594 5.75687 5.84628 5.85976 5.94479 5.96716 6.03684 6.06117 6.11160 6.47608 7.11923 7.57721 7.59673 7.89545 8.33718 8.51816 9.22116 10.84067 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.001631 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.978468 B =17161.153196 C =17667.419522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.127 4.127 4 C -0.077 4.077 5 H 0.080 0.920 6 C -0.118 4.118 7 C -0.124 4.124 8 C -0.114 4.114 9 C -0.111 4.111 10 H 0.091 0.909 11 C 0.528 3.472 12 O -0.537 6.537 13 N -0.729 5.729 14 C 0.109 3.891 15 C 0.111 3.889 16 N -0.737 5.737 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.403 0.597 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.401 0.599 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.010 -18.503 -20.391 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.095 4.095 5 H 0.099 0.901 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.132 4.132 10 H 0.109 0.891 11 C 0.315 3.685 12 O -0.413 6.413 13 N -0.382 5.382 14 C -0.016 4.016 15 C -0.014 4.014 16 N -0.393 5.393 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.238 0.762 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.235 0.765 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.474 -18.852 -19.214 32.092 hybrid contribution -1.562 1.284 -1.134 2.318 sum 15.912 -17.569 -20.348 31.239 Atomic orbital electron populations 1.21775 0.95807 1.01559 1.02016 1.21508 0.95962 0.96505 1.01873 1.21959 0.94061 0.97440 1.02964 1.21745 0.95776 0.93130 0.98896 0.90113 1.22470 0.97372 0.99087 0.96589 1.22480 0.97656 0.94821 1.01161 1.22375 0.98982 0.97716 0.96071 1.22055 0.95276 0.94690 1.01210 0.89099 1.20457 0.84378 0.80766 0.82934 1.90698 1.58844 1.56987 1.34797 1.45932 1.35658 1.47707 1.08887 1.21443 0.89979 0.93856 0.96295 1.21317 0.90754 0.94331 0.94958 1.45814 1.35833 1.48530 1.09074 1.20324 0.83957 0.81128 0.82544 1.90705 1.57879 1.55874 1.34524 1.23534 0.98114 1.00182 1.08593 1.85388 1.43078 1.58852 0.96024 1.22869 1.18864 1.31143 0.95551 0.90874 1.24995 0.97525 0.96611 0.94445 1.70015 1.40274 1.42351 0.97640 0.86160 0.81316 0.79996 0.77987 1.20261 1.20738 1.19683 0.92795 0.92686 0.92756 0.91966 0.92143 0.91725 0.90815 0.91113 0.91451 0.91243 0.91414 0.89611 0.91358 0.76230 0.90765 0.90729 0.90986 0.90994 0.76498 0.89074 0.89060 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.15 0.37 -0.72 16 2 C -0.12 -0.78 5.79 -26.73 -0.15 -0.94 16 3 C -0.13 -0.92 3.40 -26.73 -0.09 -1.01 16 4 C -0.08 -0.45 2.93 -89.45 -0.26 -0.72 16 5 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 6 C -0.12 -0.66 5.54 -25.02 -0.14 -0.80 16 7 C -0.12 -0.66 6.91 -24.74 -0.17 -0.83 16 8 C -0.11 -0.76 6.31 -25.07 -0.16 -0.92 16 9 C -0.11 -0.72 3.29 -90.66 -0.30 -1.02 16 10 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 11 C 0.53 4.73 4.67 -10.99 -0.05 4.68 16 12 O -0.54 -6.78 14.97 5.56 0.08 -6.69 16 13 N -0.73 -5.46 5.09 -60.29 -0.31 -5.77 16 14 C 0.11 0.93 5.79 -4.04 -0.02 0.91 16 15 C 0.11 1.14 5.79 -4.04 -0.02 1.12 16 16 N -0.74 -9.21 5.56 -60.30 -0.33 -9.55 16 17 C 0.53 9.62 7.85 -10.98 -0.09 9.53 16 18 O -0.52 -11.35 15.86 5.56 0.09 -11.26 16 19 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 7.51 -51.93 -0.39 -0.02 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.51 6.88 -51.93 -0.36 0.15 16 35 H 0.07 0.70 7.05 -51.93 -0.37 0.33 16 36 H 0.07 0.47 7.76 -51.93 -0.40 0.07 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.76 6.91 -51.93 -0.36 0.40 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.40 2.15 8.47 -40.82 -0.35 1.80 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.40 3.91 8.47 -40.82 -0.35 3.57 16 48 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 49 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 50 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -35.51 414.89 -10.26 -45.78 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.87 Total: 0.48 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.67 Total: -6.42 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.09 Total: -40.61 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.51 -10.26 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736674021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.349 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds