Wall clock time and date at job start Wed Apr 1 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.82985 * 2 1 4 4 C 1.54993 * 110.90395 * 236.35579 * 2 1 3 5 5 O 1.44381 * 103.48975 * 204.77743 * 4 2 1 6 6 C 1.43750 * 106.97561 * 40.06060 * 5 4 2 7 7 H 1.09002 * 110.00151 * 92.97769 * 6 5 4 8 8 C 1.52999 * 109.87970 * 214.06509 * 6 5 4 9 9 N 1.46898 * 109.46815 * 297.82826 * 8 6 5 10 10 C 1.46901 * 110.99781 * 179.97438 * 9 8 6 11 11 H 1.09004 * 112.84997 * 23.81220 * 10 9 8 12 12 C 1.53779 * 113.61435 * 154.99875 * 10 9 8 13 13 C 1.53785 * 87.08111 * 139.98528 * 12 10 9 14 14 H 1.09003 * 113.61303 * 219.93977 * 13 12 10 15 15 N 1.46497 * 113.61126 * 89.11843 * 13 12 10 16 16 C 1.34780 * 119.99566 * 155.00450 * 15 13 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47315 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47332 * 119.99854 * 24 22 20 27 27 H 1.48499 * 109.47328 * 240.00154 * 24 22 20 28 28 C 1.53781 * 113.61770 * 252.50187 * 10 9 8 29 29 C 1.54103 * 107.29069 * 333.48888 * 6 5 4 30 30 H 1.09001 * 109.47422 * 296.35213 * 1 2 3 31 31 H 1.09006 * 109.47413 * 56.34603 * 1 2 3 32 32 H 1.09004 * 109.47555 * 176.35083 * 1 2 3 33 33 H 1.09002 * 109.47047 * 183.64680 * 3 2 1 34 34 H 1.08996 * 109.47522 * 303.65406 * 3 2 1 35 35 H 1.09003 * 109.46747 * 63.65226 * 3 2 1 36 36 H 1.09003 * 110.62296 * 323.27770 * 4 2 1 37 37 H 1.09001 * 110.61936 * 86.12258 * 4 2 1 38 38 H 1.08997 * 109.46715 * 177.82956 * 8 6 5 39 39 H 1.09001 * 109.47145 * 57.83179 * 8 6 5 40 40 H 1.00899 * 111.00539 * 303.95485 * 9 8 6 41 41 H 1.09001 * 113.61339 * 25.44243 * 12 10 9 42 42 H 1.08994 * 113.69756 * 254.54266 * 12 10 9 43 43 H 0.96995 * 120.00423 * 334.99756 * 15 13 12 44 44 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 45 45 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 46 46 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 47 47 H 1.08992 * 113.61652 * 105.47285 * 28 10 9 48 48 H 1.09001 * 113.61195 * 334.56525 * 28 10 9 49 49 H 1.09001 * 110.48864 * 120.70678 * 29 6 5 50 50 H 1.09000 * 110.48567 * 243.34919 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0740 1.4300 0.0000 4 6 2.0830 -0.8022 -1.2054 5 8 3.3940 -1.2144 -0.7627 6 6 3.2718 -1.5883 0.6199 7 1 3.0836 -2.6589 0.7014 8 6 4.5542 -1.2268 1.3720 9 7 5.6815 -1.9816 0.8085 10 6 6.9328 -1.6588 1.5071 11 1 6.7689 -1.2831 2.5172 12 6 7.9875 -2.7752 1.4290 13 6 9.0347 -1.6647 1.2408 14 1 9.8039 -1.9095 0.5083 15 7 9.5880 -1.1605 2.5001 16 6 10.8108 -0.5940 2.5198 17 8 11.4532 -0.5021 1.4953 18 6 11.3803 -0.0759 3.8153 19 16 13.0240 0.6204 3.5161 20 6 13.4406 1.1342 5.1491 21 1 12.7445 0.9748 5.9595 22 6 14.6628 1.7448 5.3941 23 7 15.5108 1.9395 4.4064 24 14 15.1041 2.2902 7.1253 25 1 13.9882 1.9601 8.0479 26 1 16.3360 1.5882 7.5666 27 1 15.3386 3.7565 7.1377 28 6 7.8977 -0.7967 0.6762 29 6 2.0824 -0.8014 1.2038 30 1 -0.3634 0.4562 0.9209 31 1 -0.3634 0.5695 -0.8555 32 1 -0.3634 -1.0256 -0.0654 33 1 3.1618 1.4048 -0.0654 34 1 1.6710 1.9721 -0.8554 35 1 1.7769 1.9317 0.9210 36 1 1.4561 -1.6704 -1.4089 37 1 2.1555 -0.1671 -2.0883 38 1 4.4399 -1.4777 2.4265 39 1 4.7456 -0.1585 1.2714 40 1 5.4998 -2.9738 0.8312 41 1 7.8755 -3.4216 0.5585 42 1 8.1048 -3.3329 2.3580 43 1 9.0744 -1.2343 3.3196 44 1 10.7253 0.6975 4.2166 45 1 11.4575 -0.8941 4.5313 46 1 16.3652 2.3659 4.5776 47 1 7.9415 0.2436 0.9983 48 1 7.7610 -0.9023 -0.4001 49 1 1.3246 -1.4844 1.5876 50 1 2.4209 -0.1254 1.9891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752613921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:56 Heat of formation + Delta-G solvation = -72.064329 kcal Electronic energy + Delta-G solvation = -26845.895149 eV Core-core repulsion = 22999.416245 eV Total energy + Delta-G solvation = -3846.478904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.45352 -39.99147 -38.15776 -35.38344 -34.55231 -32.73778 -32.42142 -30.56244 -28.92798 -27.83447 -26.68875 -25.88056 -25.53524 -25.29004 -23.05603 -21.63656 -20.73899 -19.90673 -19.26819 -17.83949 -16.80547 -16.47315 -16.31017 -15.99147 -15.82339 -15.38213 -14.99161 -14.80082 -14.78756 -14.67634 -14.45331 -13.93518 -13.84424 -13.38733 -13.15727 -13.09843 -12.72173 -12.65057 -12.56980 -12.42476 -12.30840 -12.10814 -11.99372 -11.75512 -11.56997 -11.24094 -11.14258 -11.06907 -11.01350 -10.95632 -10.76030 -10.65608 -10.41798 -9.89676 -9.79525 -9.37987 -9.07222 -8.86620 -8.61859 -8.22007 -6.49003 -6.21212 -3.91498 3.03492 3.09610 3.21757 3.28441 3.33004 3.43793 3.71691 3.86301 3.94650 4.20775 4.24195 4.31939 4.37259 4.45794 4.60348 4.71067 4.76474 4.82518 4.88898 4.98275 5.09846 5.11666 5.14031 5.14839 5.15584 5.23731 5.27665 5.37488 5.41239 5.43258 5.47934 5.58269 5.59941 5.61980 5.67778 5.71597 5.78150 5.87037 5.89048 5.94383 6.03433 6.10867 6.14688 6.56105 6.69712 6.88558 7.10493 7.60305 7.73604 8.35867 8.64253 9.24186 10.86272 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.001616 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.565440 B =17319.083518 C =18007.009736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.051 3.949 5 O -0.350 6.350 6 C 0.081 3.919 7 H 0.063 0.937 8 C 0.060 3.940 9 N -0.667 5.667 10 C 0.058 3.942 11 H 0.070 0.930 12 C -0.149 4.149 13 C 0.124 3.876 14 H 0.105 0.895 15 N -0.722 5.722 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.135 4.135 29 C -0.144 4.144 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.339 0.661 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.067 0.933 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.634 -8.519 -6.591 34.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.026 4.026 5 O -0.268 6.268 6 C 0.023 3.977 7 H 0.081 0.919 8 C -0.069 4.069 9 N -0.298 5.298 10 C -0.051 4.051 11 H 0.088 0.912 12 C -0.188 4.188 13 C 0.017 3.983 14 H 0.123 0.877 15 N -0.375 5.375 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.175 4.175 29 C -0.182 4.182 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.158 0.842 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.230 0.770 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.094 0.906 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -31.060 -7.851 -8.989 33.274 hybrid contribution -1.165 -0.234 3.747 3.931 sum -32.226 -8.086 -5.242 33.635 Atomic orbital electron populations 1.21762 0.93464 1.01965 1.02273 1.22126 0.96079 0.96553 0.95237 1.21773 1.01787 0.93969 1.01837 1.23657 0.84857 0.97140 0.96913 1.89045 1.27844 1.85920 1.24014 1.22709 0.94155 0.97907 0.82966 0.91864 1.22230 0.89709 1.00068 0.94894 1.60511 1.01508 1.11194 1.56585 1.23127 0.88420 0.97633 0.95961 0.91194 1.23598 0.95362 0.96701 1.03090 1.21626 0.94955 0.94216 0.87523 0.87698 1.45722 1.18675 1.63005 1.10146 1.20316 0.80217 0.76619 0.90823 1.90702 1.58901 1.54579 1.34669 1.23535 1.05830 1.03858 0.97186 1.85414 1.08421 1.75556 1.13894 1.22915 1.05621 1.45659 0.94195 0.90898 1.24993 0.95242 0.95152 0.98209 1.70029 1.08451 1.40538 1.31218 0.86116 0.78443 0.78381 0.82543 1.19652 1.20559 1.20570 1.23519 0.94012 0.98852 1.01075 1.23105 0.97481 0.99246 0.98405 0.92221 0.92205 0.92437 0.91719 0.92391 0.92460 0.92454 0.89086 0.94231 0.90219 0.84229 0.88204 0.91024 0.77008 0.89268 0.89243 0.92232 0.91403 0.88449 0.90554 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 8.55 37.16 0.32 -0.26 16 2 C -0.10 -0.56 0.99 -152.51 -0.15 -0.71 16 3 C -0.14 -0.82 8.53 37.16 0.32 -0.51 16 4 C 0.05 0.35 6.63 38.21 0.25 0.60 16 5 O -0.35 -3.30 11.09 -35.23 -0.39 -3.69 16 6 C 0.08 0.58 3.63 -26.16 -0.09 0.48 16 7 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 8 C 0.06 0.46 5.00 -3.83 -0.02 0.44 16 9 N -0.67 -5.64 6.48 -105.87 -0.69 -6.33 16 10 C 0.06 0.52 4.02 -66.90 -0.27 0.25 16 11 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 12 C -0.15 -1.30 7.40 -25.92 -0.19 -1.49 16 13 C 0.12 1.50 4.32 -67.11 -0.29 1.21 16 14 H 0.10 1.50 7.46 -51.93 -0.39 1.11 16 15 N -0.72 -9.77 5.26 -53.01 -0.28 -10.05 16 16 C 0.53 10.08 7.85 -10.98 -0.09 10.00 16 17 O -0.51 -11.88 15.46 5.56 0.09 -11.79 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C -0.13 -1.53 7.68 -25.92 -0.20 -1.73 16 29 C -0.14 -0.80 5.81 -25.20 -0.15 -0.94 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.34 8.01 -51.93 -0.42 -0.08 16 37 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.04 0.26 8.13 -51.93 -0.42 -0.17 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.34 2.47 8.55 -39.29 -0.34 2.13 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.40 4.20 8.70 -40.82 -0.36 3.84 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 0.35 7.86 -51.93 -0.41 -0.06 16 50 H 0.08 0.43 7.42 -51.93 -0.39 0.05 16 LS Contribution 416.61 15.07 6.28 6.28 Total: -1.00 -34.63 416.61 -10.63 -45.26 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -9.00 Total: 1.84 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.14 Total: -8.60 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.23 Total: -41.92 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.30 Total: -15.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.63 -10.63 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752613921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.801 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds