Wall clock time and date at job start Wed Apr 1 2020 01:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46917 * 2 1 4 4 C 1.52997 * 109.46884 * 120.00325 * 2 1 3 5 5 C 1.53004 * 109.47000 * 174.99897 * 4 2 1 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.47021 * 125.65024 * 359.41182 * 8 6 5 10 10 C 1.54315 * 107.27409 * 180.97007 * 9 8 6 11 11 C 1.55154 * 102.86480 * 22.53033 * 10 9 8 12 12 H 1.09003 * 111.00563 * 82.37309 * 11 10 9 13 13 C 1.52996 * 111.00595 * 206.22821 * 11 10 9 14 14 N 1.46504 * 109.47174 * 287.19302 * 13 11 10 15 15 C 1.34775 * 120.00207 * 179.97438 * 14 13 11 16 16 O 1.21275 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99929 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47149 * 180.02562 * 17 15 14 19 19 C 1.76207 * 100.00222 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99659 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99871 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00414 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47196 * 89.99603 * 23 21 19 25 25 H 1.48501 * 109.47174 * 209.99941 * 23 21 19 26 26 H 1.48503 * 109.46793 * 329.99712 * 23 21 19 27 27 C 1.47426 * 125.64505 * 179.72939 * 8 6 5 28 28 H 1.09001 * 109.46908 * 299.99946 * 1 2 3 29 29 H 1.08996 * 109.47017 * 60.00134 * 1 2 3 30 30 H 1.09004 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46908 * 240.00054 * 2 1 3 32 32 H 1.08996 * 109.47642 * 300.00014 * 3 2 1 33 33 H 1.09001 * 109.47288 * 60.00287 * 3 2 1 34 34 H 1.09007 * 109.47011 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47849 * 54.99814 * 4 2 1 36 36 H 1.08998 * 109.47443 * 294.99682 * 4 2 1 37 37 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 38 38 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 39 39 H 1.08996 * 109.88207 * 300.52041 * 9 8 6 40 40 H 1.09003 * 109.87977 * 61.68746 * 9 8 6 41 41 H 1.08996 * 110.92423 * 264.11532 * 10 9 8 42 42 H 1.08997 * 110.73954 * 140.85723 * 10 9 8 43 43 H 1.09000 * 109.47138 * 47.19613 * 13 11 10 44 44 H 1.09006 * 109.47285 * 167.19881 * 13 11 10 45 45 H 0.97006 * 119.99510 * 0.02562 * 14 13 11 46 46 H 1.09000 * 109.47377 * 300.00281 * 17 15 14 47 47 H 1.09001 * 109.47475 * 60.00292 * 17 15 14 48 48 H 0.96996 * 120.00096 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.36361 * 274.67139 * 27 8 6 50 50 H 1.09001 * 110.37156 * 36.87958 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0672 -1.5411 2.4186 7 8 3.2829 -1.9213 3.2620 8 7 5.3886 -1.7480 2.5850 9 6 6.4440 -1.3463 1.6436 10 6 7.7900 -1.8102 2.2390 11 6 7.3671 -2.9514 3.2013 12 1 7.2321 -3.8884 2.6608 13 6 8.3805 -3.1163 4.3355 14 7 9.6034 -3.7304 3.8123 15 6 10.6417 -3.9729 4.6367 16 8 10.5636 -3.6831 5.8117 17 6 11.8998 -4.6041 4.0983 18 16 13.0987 -4.7993 5.4401 19 6 14.4319 -5.5363 4.5545 20 1 14.3359 -5.7291 3.4962 21 6 15.6048 -5.8700 5.2172 22 7 15.7216 -5.6355 6.5072 23 14 17.0179 -6.6520 4.2785 24 1 17.9108 -5.5888 3.7517 25 1 17.7868 -7.5381 5.1889 26 1 16.4793 -7.4510 3.1485 27 6 6.0145 -2.4204 3.7381 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6054 -1.7199 1.2952 36 1 1.7517 -0.1584 2.1370 37 1 3.9995 0.1675 1.1420 38 1 3.8532 -1.3940 0.3002 39 1 6.2799 -1.8232 0.6773 40 1 6.4456 -0.2624 1.5289 41 1 8.2720 -1.0015 2.7883 42 1 8.4479 -2.1892 1.4570 43 1 8.6163 -2.1391 4.7570 44 1 7.9570 -3.7541 5.1114 45 1 9.6660 -3.9619 2.8723 46 1 11.6644 -5.5813 3.6769 47 1 12.3230 -3.9662 3.3224 48 1 16.5415 -5.8684 6.9702 49 1 6.1804 -1.7095 4.5476 50 1 5.3901 -3.2455 4.0809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758794021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:03 Heat of formation + Delta-G solvation = -101.663024 kcal Electronic energy + Delta-G solvation = -26357.254867 eV Core-core repulsion = 22509.492467 eV Total energy + Delta-G solvation = -3847.762400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.59404 -39.28445 -38.15116 -36.88177 -34.82708 -32.45033 -32.37781 -31.18762 -30.09657 -29.06441 -27.64091 -26.22194 -25.47356 -24.29617 -23.25423 -20.96206 -20.48542 -20.29028 -19.52363 -17.89792 -17.47797 -17.05437 -16.31136 -16.19537 -15.68943 -15.37884 -15.35153 -14.83115 -14.80770 -14.35182 -14.16342 -14.06617 -13.88719 -13.61018 -13.37070 -13.15968 -13.00577 -12.87717 -12.68170 -12.58539 -12.41292 -12.23995 -11.89957 -11.79751 -11.67638 -11.29278 -11.25647 -11.16811 -11.09455 -11.07645 -11.04110 -11.00668 -10.77746 -10.17326 -9.83439 -9.45248 -9.08862 -9.05719 -8.93784 -8.25521 -6.51908 -6.23245 -3.94083 2.28323 2.52526 3.00827 3.06458 3.21003 3.26551 3.30277 3.64207 3.94611 4.06358 4.18807 4.27361 4.31359 4.39219 4.41396 4.61210 4.70383 4.78274 4.85858 4.89876 4.93937 5.03648 5.11991 5.14583 5.16780 5.18761 5.23330 5.28396 5.36201 5.41116 5.43694 5.46675 5.52877 5.56054 5.60042 5.60576 5.73278 5.74565 5.84468 5.86752 5.87840 5.91296 5.96128 6.10895 6.54681 7.10332 7.57744 7.65108 7.80049 8.33442 8.57319 9.22091 10.84192 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.037800 B = 0.001409 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.560863 B =19861.967422 C =20275.116524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.137 4.137 6 C 0.527 3.473 7 O -0.539 6.539 8 N -0.622 5.622 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.113 4.113 12 H 0.093 0.907 13 C 0.133 3.867 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.074 0.926 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.283 12.072 -17.359 33.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.416 6.416 8 N -0.357 5.357 9 C -0.023 4.023 10 C -0.167 4.167 11 C -0.133 4.133 12 H 0.111 0.889 13 C 0.008 3.992 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.010 4.010 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.231 0.769 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.826 12.368 -14.772 33.027 hybrid contribution 1.188 -0.930 -2.493 2.914 sum -25.637 11.438 -17.265 32.957 Atomic orbital electron populations 1.21830 0.94995 1.01885 1.01805 1.21144 0.96030 0.96344 0.98122 1.21920 1.01017 0.96001 1.01899 1.21429 0.92630 1.01643 0.98118 1.21739 0.98217 1.01576 0.96108 1.20487 0.80184 0.79342 0.88384 1.90725 1.54351 1.51551 1.44988 1.48543 1.05641 1.58972 1.22509 1.22073 0.87049 1.00132 0.93001 1.22773 0.95864 0.98586 0.99494 1.22609 0.94349 0.99404 0.96907 0.88881 1.21135 0.83925 0.99093 0.95033 1.45951 1.15222 1.65503 1.12638 1.20309 0.83927 0.77794 0.86203 1.90712 1.81557 1.50405 1.16351 1.23527 0.97597 1.02906 1.06376 1.85420 1.08471 1.80668 1.08812 1.22866 1.01154 1.47051 0.97380 0.90931 1.24987 0.98105 0.95400 0.95033 1.70016 1.27274 1.44957 1.08021 0.86172 0.80990 0.79031 0.79327 1.20266 1.20734 1.19704 1.22147 0.92537 0.97438 0.88842 0.92579 0.92687 0.92601 0.91187 0.92702 0.92569 0.92562 0.91148 0.91108 0.88757 0.88999 0.91145 0.91122 0.89769 0.89489 0.91134 0.91122 0.76856 0.89226 0.89222 0.92160 0.90795 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 2 C -0.10 -0.48 2.92 -90.62 -0.26 -0.74 16 3 C -0.15 -0.66 8.95 37.15 0.33 -0.33 16 4 C -0.10 -0.65 3.97 -26.73 -0.11 -0.76 16 5 C -0.14 -0.80 4.65 -27.88 -0.13 -0.93 16 6 C 0.53 4.96 7.85 -10.98 -0.09 4.88 16 7 O -0.54 -7.29 16.24 5.55 0.09 -7.20 16 8 N -0.62 -4.93 3.33 -170.52 -0.57 -5.50 16 9 C 0.10 0.51 6.48 -3.07 -0.02 0.49 16 10 C -0.13 -0.70 6.37 -24.90 -0.16 -0.86 16 11 C -0.11 -0.79 3.04 -88.47 -0.27 -1.06 16 12 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 13 C 0.13 1.35 5.13 -4.04 -0.02 1.33 16 14 N -0.74 -8.81 5.50 -60.30 -0.33 -9.14 16 15 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 16 O -0.52 -11.44 15.86 5.56 0.09 -11.35 16 17 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 23 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.11 0.95 6.38 -2.53 -0.02 0.93 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.21 6.56 -51.93 -0.34 -0.13 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.09 0.42 6.56 -51.92 -0.34 0.08 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.78 7.97 -51.93 -0.41 0.36 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.40 3.51 8.47 -40.82 -0.35 3.17 16 46 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 47 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 50 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 LS Contribution 419.38 15.07 6.32 6.32 Total: -1.00 -36.33 419.38 -9.96 -46.28 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.99 Total: -2.86 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.06 Total: -3.62 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.17 Total: -39.88 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.18 Total: -18.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.33 -9.96 -46.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758794021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.379 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds