Wall clock time and date at job start Wed Apr 1 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47361 * 2 1 4 4 N 1.46497 * 109.46896 * 120.00284 * 2 1 3 5 5 C 1.46499 * 120.00209 * 124.27430 * 4 2 1 6 6 C 1.53005 * 109.47140 * 269.99661 * 5 4 2 7 7 C 1.52997 * 109.46991 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47086 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00244 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99428 * 359.97438 * 9 8 7 11 11 C 1.50693 * 120.00091 * 179.97438 * 9 8 7 12 12 H 1.09002 * 115.55135 * 34.33398 * 11 9 8 13 13 C 1.53068 * 117.51515 * 248.60850 * 11 9 8 14 14 C 1.52999 * 59.98721 * 252.52330 * 13 11 9 15 15 H 1.08998 * 117.49924 * 252.50032 * 14 13 11 16 16 C 1.52994 * 117.49982 * 107.49676 * 14 13 11 17 17 C 1.34773 * 119.99783 * 304.27129 * 4 2 1 18 18 O 1.21281 * 120.00622 * 354.56306 * 17 4 2 19 19 C 1.50709 * 120.00201 * 174.56205 * 17 4 2 20 20 S 1.81000 * 109.47318 * 185.02340 * 19 17 4 21 21 C 1.76200 * 99.99785 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00251 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00107 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46830 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47358 * 119.99708 * 25 23 21 28 28 H 1.48501 * 109.46504 * 239.99769 * 25 23 21 29 29 H 1.08999 * 109.46794 * 295.24316 * 1 2 3 30 30 H 1.09002 * 109.46623 * 55.23579 * 1 2 3 31 31 H 1.08993 * 109.47389 * 175.23794 * 1 2 3 32 32 H 1.09000 * 109.46500 * 239.99512 * 2 1 3 33 33 H 1.08993 * 109.47040 * 184.90205 * 3 2 1 34 34 H 1.09002 * 109.47183 * 304.90133 * 3 2 1 35 35 H 1.09002 * 109.46907 * 64.89819 * 3 2 1 36 36 H 1.08996 * 109.47239 * 149.99651 * 5 4 2 37 37 H 1.08999 * 109.46884 * 29.99971 * 5 4 2 38 38 H 1.09003 * 109.46661 * 59.99920 * 6 5 4 39 39 H 1.08995 * 109.46821 * 300.00206 * 6 5 4 40 40 H 1.08996 * 109.47251 * 60.00074 * 7 6 5 41 41 H 1.09001 * 109.47164 * 299.99779 * 7 6 5 42 42 H 0.97002 * 119.99556 * 359.97438 * 8 7 6 43 43 H 1.09004 * 117.51799 * 145.04400 * 13 11 9 44 44 H 1.09007 * 117.49619 * 0.02562 * 13 11 9 45 45 H 1.08999 * 109.47598 * 351.25523 * 16 14 13 46 46 H 1.08998 * 109.46956 * 111.25996 * 16 14 13 47 47 H 1.09005 * 109.47320 * 231.25597 * 16 14 13 48 48 H 1.08999 * 109.46639 * 305.02690 * 19 17 4 49 49 H 1.09001 * 109.46714 * 65.02383 * 19 17 4 50 50 H 0.97001 * 119.99888 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9361 -1.8248 1.0638 6 6 2.1318 -3.1219 0.9556 7 6 3.0903 -4.3063 0.8168 8 7 2.3201 -5.5482 0.7126 9 6 2.9583 -6.7281 0.5822 10 8 4.1702 -6.7616 0.5506 11 6 2.1660 -8.0055 0.4756 12 1 1.2154 -7.9266 -0.0519 13 6 2.2447 -8.9863 1.6482 14 6 2.9487 -9.3121 0.3294 15 1 2.5130 -10.0926 -0.2942 16 6 4.4757 -9.2215 0.3026 17 6 1.6233 -0.2826 2.4183 18 8 0.9437 0.7152 2.5343 19 6 2.0259 -1.0662 3.6411 20 16 1.2257 -0.3580 5.1020 21 6 1.8540 -1.4349 6.3471 22 1 2.5255 -2.2369 6.0788 23 6 1.4858 -1.2523 7.6729 24 7 0.6678 -0.2744 8.0001 25 14 2.1526 -2.3935 8.9931 26 1 3.0460 -3.4026 8.3698 27 1 2.9178 -1.6030 9.9905 28 1 1.0234 -3.0822 9.6682 29 1 -0.3633 0.4383 0.9295 30 1 -0.3632 0.5860 -0.8443 31 1 -0.3634 -1.0240 -0.0853 32 1 1.8933 -0.5139 -0.8900 33 1 3.1265 1.4436 -0.0878 34 1 1.6069 1.9810 -0.8428 35 1 1.7502 1.9303 0.9306 36 1 3.5847 -1.8714 1.9385 37 1 3.5434 -1.6981 0.1676 38 1 1.4832 -3.0752 0.0808 39 1 1.5245 -3.2485 1.8518 40 1 3.7391 -4.3531 1.6913 41 1 3.6972 -4.1794 -0.0797 42 1 1.3508 -5.5213 0.7382 43 1 1.3458 -9.5526 1.8922 44 1 2.8692 -8.7071 2.4968 45 1 4.8296 -8.7748 1.2318 46 1 4.8971 -10.2212 0.1964 47 1 4.7884 -8.6041 -0.5395 48 1 1.7167 -2.1049 3.5250 49 1 3.1082 -1.0205 3.7617 50 1 0.4108 -0.1466 8.9266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296668152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:02 Heat of formation + Delta-G solvation = -59.372525 kcal Electronic energy + Delta-G solvation = -27644.955632 eV Core-core repulsion = 23799.027085 eV Total energy + Delta-G solvation = -3845.928547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37197 -39.91309 -37.27995 -36.24501 -35.23465 -33.46695 -32.44434 -30.95581 -28.87165 -28.60052 -27.09020 -26.15991 -25.49441 -23.80931 -22.28473 -21.94319 -21.34531 -20.06949 -18.76080 -17.64040 -17.37949 -16.67496 -16.41909 -15.84785 -15.71094 -15.38442 -15.10994 -14.81880 -14.33851 -14.07777 -13.99649 -13.87959 -13.49250 -13.30255 -13.17109 -12.83561 -12.73615 -12.62576 -12.57471 -12.40410 -12.38030 -12.17759 -11.76356 -11.64073 -11.52172 -11.23361 -11.11799 -11.07535 -11.01330 -10.84604 -10.75991 -10.56947 -10.40114 -9.81421 -9.78982 -9.28830 -9.12955 -9.08665 -8.56462 -8.24094 -6.51543 -6.23461 -3.93788 2.28139 2.75527 2.98649 3.04874 3.20236 3.25372 3.30090 3.49455 3.58365 4.18871 4.29287 4.44061 4.51888 4.57171 4.64718 4.76862 4.85190 4.94887 5.06937 5.11659 5.12856 5.14996 5.20354 5.27437 5.32310 5.37214 5.47806 5.52741 5.58987 5.62767 5.68174 5.72470 5.74504 5.79611 5.85147 5.88403 5.88945 5.93718 5.96730 6.13091 6.18177 6.30923 6.35680 6.42181 6.82044 7.25923 7.55937 7.58845 8.02144 8.33906 8.57191 9.22360 10.83960 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.006703 B = 0.003253 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4176.302290 B = 8605.875064 C =12167.139151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.148 3.852 3 C -0.170 4.170 4 N -0.618 5.618 5 C 0.117 3.883 6 C -0.154 4.154 7 C 0.122 3.878 8 N -0.726 5.726 9 C 0.542 3.458 10 O -0.535 6.535 11 C -0.196 4.196 12 H 0.122 0.878 13 C -0.150 4.150 14 C -0.119 4.119 15 H 0.110 0.890 16 C -0.112 4.112 17 C 0.536 3.464 18 O -0.508 6.508 19 C -0.152 4.152 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.917 3.083 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.280 1.280 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.402 0.598 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -12.805 -20.223 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.045 3.955 3 C -0.228 4.228 4 N -0.353 5.353 5 C -0.008 4.008 6 C -0.193 4.193 7 C -0.002 4.002 8 N -0.378 5.378 9 C 0.329 3.671 10 O -0.412 6.412 11 C -0.217 4.217 12 H 0.140 0.860 13 C -0.188 4.188 14 C -0.138 4.138 15 H 0.128 0.872 16 C -0.169 4.169 17 C 0.324 3.676 18 O -0.383 6.383 19 C -0.303 4.303 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.743 3.257 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.236 0.764 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.450 -11.258 -19.944 23.033 hybrid contribution 0.650 -1.832 0.686 2.061 sum 3.100 -13.089 -19.258 23.491 Atomic orbital electron populations 1.22234 0.94928 1.01714 1.04122 1.20939 0.94673 0.93238 0.86637 1.22221 1.00521 0.96237 1.03813 1.48081 1.48595 1.32773 1.05886 1.21411 0.91515 0.84383 1.03458 1.22305 0.99180 0.94028 1.03777 1.21275 0.94207 0.82251 1.02470 1.45968 1.10608 1.06300 1.74928 1.19671 0.87734 0.84085 0.75654 1.90713 1.13911 1.86855 1.49745 1.22296 1.02215 0.90152 1.07056 0.86004 1.23119 1.03318 1.00319 0.92032 1.22374 0.96159 0.95483 0.99775 0.87187 1.21369 0.91413 1.00367 1.03774 1.20263 0.79102 0.84730 0.83457 1.90632 1.37100 1.25004 1.85516 1.23624 1.04989 1.02885 0.98788 1.85370 1.61466 1.42684 0.93961 1.22887 1.33821 1.17729 0.93742 0.90962 1.24980 0.94841 0.95807 0.97897 1.70024 1.32142 1.29391 1.18716 0.86145 0.78741 0.80086 0.80720 1.19606 1.20527 1.20566 0.89666 0.92156 0.93086 0.90321 0.93048 0.92200 0.90046 0.89684 0.90220 0.90883 0.90259 0.91013 0.91338 0.76400 0.87742 0.88069 0.91667 0.93274 0.91427 0.89533 0.89366 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.13 37.16 0.34 -1.74 16 2 C 0.15 1.70 3.27 -67.93 -0.22 1.48 16 3 C -0.17 -2.04 9.24 37.16 0.34 -1.70 16 4 N -0.62 -8.06 2.42 -166.10 -0.40 -8.47 16 5 C 0.12 1.16 5.10 -4.04 -0.02 1.13 16 6 C -0.15 -1.36 5.61 -26.73 -0.15 -1.51 16 7 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 8 N -0.73 -6.43 5.56 -60.30 -0.33 -6.77 16 9 C 0.54 5.74 7.59 -10.99 -0.08 5.66 16 10 O -0.54 -7.39 13.10 5.55 0.07 -7.32 16 11 C -0.20 -1.57 6.19 -91.74 -0.57 -2.13 16 12 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.15 -1.14 9.88 -26.70 -0.26 -1.41 16 14 C -0.12 -0.93 6.40 -90.62 -0.58 -1.52 16 15 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.11 -1.05 8.43 37.15 0.31 -0.74 16 17 C 0.54 9.59 7.06 -10.98 -0.08 9.52 16 18 O -0.51 -10.79 12.06 5.56 0.07 -10.72 16 19 C -0.15 -2.99 4.73 36.01 0.17 -2.82 16 20 S -0.06 -1.63 20.58 -107.50 -2.21 -3.85 16 21 C -0.53 -15.01 9.50 30.94 0.29 -14.71 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.08 1.35 5.92 -51.93 -0.31 1.04 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.26 6.20 -51.93 -0.32 0.94 16 36 H 0.08 0.89 6.62 -51.93 -0.34 0.55 16 37 H 0.08 0.61 7.96 -51.93 -0.41 0.20 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.84 6.81 -51.93 -0.35 0.49 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.40 2.71 8.47 -40.82 -0.35 2.36 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.89 8.05 -51.93 -0.42 0.48 16 45 H 0.06 0.72 7.01 -51.93 -0.36 0.36 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.72 7.26 -51.93 -0.38 0.34 16 48 H 0.09 1.57 6.68 -51.92 -0.35 1.22 16 49 H 0.09 1.64 7.50 -51.92 -0.39 1.25 16 50 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 413.11 15.07 6.23 6.23 Total: -1.00 -34.73 413.11 -10.08 -44.81 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.58 Total: 2.39 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.62 Total: -7.40 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.00 Total: -40.44 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.14 Total: -18.03 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.73 -10.08 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296668152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.565 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds