Wall clock time and date at job start Wed Apr 1 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.34927 * 2 1 4 4 C 1.54942 * 110.30872 * 237.86624 * 2 1 3 5 5 C 1.55313 * 100.93997 * 204.63881 * 4 2 1 6 6 C 1.54378 * 102.25284 * 34.12881 * 5 4 2 7 7 H 1.08992 * 109.91002 * 98.20515 * 6 5 4 8 8 C 1.53004 * 109.82976 * 219.13417 * 6 5 4 9 9 N 1.46900 * 109.47154 * 184.45021 * 8 6 5 10 10 C 1.46900 * 111.00234 * 162.43731 * 9 8 6 11 11 C 1.53005 * 109.46988 * 290.24451 * 10 9 8 12 12 N 1.46497 * 109.46997 * 185.23032 * 11 10 9 13 13 C 1.34777 * 120.00223 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00046 * 179.97438 * 13 12 11 16 16 S 1.81006 * 109.47077 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00065 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99879 * 179.72653 * 17 16 15 20 20 N 1.31624 * 119.99754 * 180.27697 * 19 17 16 21 21 Si 1.86796 * 119.99849 * 0.27548 * 19 17 16 22 22 H 1.48504 * 109.47130 * 90.00389 * 21 19 17 23 23 H 1.48502 * 109.47193 * 209.99835 * 21 19 17 24 24 H 1.48496 * 109.47368 * 330.00174 * 21 19 17 25 25 C 1.46896 * 110.99854 * 286.39367 * 9 8 6 26 26 C 1.53002 * 117.49634 * 239.48837 * 25 9 8 27 27 C 1.53005 * 60.00251 * 252.51053 * 26 25 9 28 28 O 1.43242 * 107.58910 * 338.64348 * 6 5 4 29 29 H 1.09000 * 109.46953 * 299.30468 * 1 2 3 30 30 H 1.08998 * 109.47260 * 59.30375 * 1 2 3 31 31 H 1.08994 * 109.46693 * 179.30954 * 1 2 3 32 32 H 1.09003 * 111.12097 * 322.54793 * 4 2 1 33 33 H 1.08995 * 111.13148 * 86.71582 * 4 2 1 34 34 H 1.08996 * 110.84170 * 275.93921 * 5 4 2 35 35 H 1.09001 * 110.85123 * 152.32261 * 5 4 2 36 36 H 1.09000 * 109.47434 * 64.45236 * 8 6 5 37 37 H 1.09003 * 109.46887 * 304.44778 * 8 6 5 38 38 H 1.08996 * 109.47236 * 170.23967 * 10 9 8 39 39 H 1.09005 * 109.46953 * 50.23774 * 10 9 8 40 40 H 1.08999 * 109.46991 * 65.23251 * 11 10 9 41 41 H 1.09000 * 109.47050 * 305.23189 * 11 10 9 42 42 H 0.97005 * 119.99906 * 359.97438 * 12 11 10 43 43 H 1.08999 * 109.47121 * 60.00124 * 15 13 12 44 44 H 1.09000 * 109.47475 * 299.99722 * 15 13 12 45 45 H 0.97006 * 119.99680 * 179.97438 * 20 19 17 46 46 H 1.08996 * 115.55518 * 25.19379 * 25 9 8 47 47 H 1.08998 * 117.50309 * 359.97438 * 26 25 9 48 48 H 1.09007 * 117.49949 * 145.02238 * 26 25 9 49 49 H 1.09002 * 117.49911 * 252.51175 * 27 26 25 50 50 H 1.08995 * 117.49609 * 107.48807 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0678 -0.7729 -1.2305 5 6 3.4700 -1.2024 -0.7191 6 6 3.2113 -1.4419 0.7839 7 1 3.0632 -2.5055 0.9702 8 6 4.3992 -0.9324 1.6027 9 7 4.1934 -1.2595 3.0199 10 6 5.4544 -1.1736 3.7686 11 6 6.3778 -2.3177 3.3451 12 7 7.5826 -2.3068 4.1785 13 6 8.5449 -3.2302 3.9841 14 8 8.4131 -4.0705 3.1196 15 6 9.7845 -3.2186 4.8410 16 16 10.8769 -4.5721 4.3402 17 6 12.2055 -4.3275 5.4713 18 1 12.1637 -3.5197 6.1869 19 6 13.3031 -5.1768 5.4468 20 7 14.2931 -4.9974 6.2954 21 14 13.3751 -6.5744 4.2095 22 1 14.0281 -6.0991 2.9633 23 1 14.1574 -7.7005 4.7797 24 1 11.9972 -7.0346 3.9018 25 6 3.1671 -0.3940 3.6162 26 6 3.5801 0.4750 4.8059 27 6 2.6798 -0.7428 5.0241 28 8 2.0287 -0.7167 1.1406 29 1 -0.3633 0.5030 0.8962 30 1 -0.3634 0.5246 -0.8837 31 1 -0.3632 -1.0276 -0.0124 32 1 1.4471 -1.6414 -1.4508 33 1 2.1496 -0.1202 -2.0995 34 1 4.1974 -0.4039 -0.8651 35 1 3.7968 -2.1204 -1.2076 36 1 4.4830 0.1483 1.4877 37 1 5.3145 -1.4074 1.2494 38 1 5.2488 -1.2488 4.8364 39 1 5.9378 -0.2196 3.5579 40 1 6.6581 -2.1903 2.2995 41 1 5.8589 -3.2682 3.4690 42 1 7.6881 -1.6344 4.8697 43 1 9.5045 -3.3461 5.8867 44 1 10.3030 -2.2679 4.7171 45 1 15.0600 -5.5912 6.2785 46 1 2.4382 0.0198 2.9195 47 1 4.6131 0.4042 5.1464 48 1 3.1229 1.4608 4.8919 49 1 1.6303 -0.5581 5.2535 50 1 3.1207 -1.6144 5.5077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663704963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:29 Heat of formation + Delta-G solvation = -52.803798 kcal Electronic energy + Delta-G solvation = -27368.458554 eV Core-core repulsion = 23522.814849 eV Total energy + Delta-G solvation = -3845.643705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38440 -39.38588 -38.67148 -35.30481 -34.11848 -32.70685 -32.43508 -32.09673 -30.24033 -28.54106 -26.93489 -25.60003 -24.15599 -23.16446 -22.32492 -21.88703 -21.18292 -20.61146 -19.87839 -17.87519 -17.37413 -16.92040 -16.51875 -16.35194 -16.02462 -15.50418 -15.21883 -14.93011 -14.83092 -14.45440 -14.12119 -13.97029 -13.73878 -13.49544 -13.35149 -13.19154 -12.80847 -12.78145 -12.62926 -12.44457 -12.21536 -12.09890 -12.00899 -11.57694 -11.42042 -11.29173 -11.26085 -11.22942 -11.16746 -11.00258 -10.88871 -10.59445 -10.45615 -9.85588 -9.78780 -9.52901 -9.01336 -8.94634 -8.49373 -8.45174 -6.91175 -6.28458 -4.00091 2.72316 2.98891 3.11378 3.32377 3.33977 3.49662 3.51635 3.69516 3.83438 4.08314 4.30449 4.32350 4.33794 4.56196 4.62048 4.70715 4.73627 4.77320 4.78477 4.84518 4.92975 4.93774 5.00850 5.10655 5.12916 5.13923 5.23609 5.28991 5.30110 5.35454 5.38795 5.41890 5.48296 5.56381 5.65699 5.71855 5.74557 5.78926 5.84556 5.85435 5.88210 5.92572 6.01925 6.49167 6.67141 6.75679 6.84212 7.60562 7.94597 8.42113 8.49853 9.17767 10.80745 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.001877 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.631738 B =14911.785727 C =15996.940373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.088 3.912 7 H 0.091 0.909 8 C 0.042 3.958 9 N -0.499 5.499 10 C 0.039 3.961 11 C 0.125 3.875 12 N -0.737 5.737 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.026 3.974 26 C -0.226 4.226 27 C -0.172 4.172 28 O -0.368 6.368 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.398 0.602 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.271 0.729 46 H 0.142 0.858 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.830 14.569 -11.241 34.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.188 4.188 5 C -0.191 4.191 6 C 0.031 3.969 7 H 0.109 0.891 8 C -0.086 4.086 9 N -0.221 5.221 10 C -0.089 4.089 11 C 0.000 4.000 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.082 4.082 26 C -0.264 4.264 27 C -0.210 4.210 28 O -0.288 6.288 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.232 0.768 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.159 0.841 47 H 0.115 0.885 48 H 0.109 0.891 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -29.123 12.600 -12.408 34.071 hybrid contribution 0.975 1.596 0.846 2.053 sum -28.148 14.196 -11.562 33.579 Atomic orbital electron populations 1.21874 0.93787 1.02842 1.02253 1.22968 0.94825 0.95520 0.85314 0.91558 1.23302 0.96236 1.00917 0.98382 1.23153 0.97768 1.03018 0.95112 1.22756 0.84757 0.97025 0.92411 0.89145 1.22646 0.98458 0.99346 0.88121 1.61608 1.06755 1.51966 1.01728 1.22386 0.89810 0.97242 0.99469 1.21217 0.84807 0.99227 0.94745 1.45876 1.20002 1.34181 1.39132 1.20253 0.83687 0.80350 0.83979 1.90701 1.78617 1.36675 1.33290 1.23278 0.96555 1.05325 1.02307 1.84791 1.19107 1.37323 1.50305 1.22322 1.03806 1.19885 1.20913 0.89394 1.24714 0.94218 0.97064 0.95321 1.69940 1.07902 1.38236 1.35611 0.86733 0.81153 0.82253 0.81705 1.19222 1.19940 1.15888 1.23039 0.97657 0.96817 0.90713 1.23602 1.00987 0.96075 1.05775 1.23024 0.99559 0.98738 0.99671 1.88443 1.42387 1.64565 1.33363 0.91951 0.91455 0.91863 0.90201 0.90080 0.90418 0.89608 0.93815 0.89235 0.89660 0.93763 0.91800 0.90582 0.76805 0.88431 0.88522 0.91952 0.84096 0.88470 0.89085 0.88695 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.62 37.16 0.36 -0.42 16 2 C 0.07 0.44 4.07 -25.70 -0.10 0.33 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 4 C -0.15 -0.78 6.57 -24.48 -0.16 -0.94 16 5 C -0.15 -0.90 6.54 -24.78 -0.16 -1.06 16 6 C 0.09 0.68 3.74 -26.01 -0.10 0.59 16 7 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 8 C 0.04 0.35 4.52 -3.82 -0.02 0.33 16 9 N -0.50 -4.58 4.62 -226.64 -1.05 -5.63 16 10 C 0.04 0.35 3.73 -3.82 -0.01 0.33 16 11 C 0.12 1.44 5.60 -4.04 -0.02 1.41 16 12 N -0.74 -9.41 5.56 -60.30 -0.33 -9.75 16 13 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 14 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 15 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 16 S -0.14 -3.61 18.54 -107.50 -1.99 -5.60 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 21 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.23 -5.99 6.73 56.52 0.38 -5.61 16 25 C 0.03 0.23 5.60 -67.71 -0.38 -0.15 16 26 C -0.23 -1.78 9.51 -26.73 -0.25 -2.03 16 27 C -0.17 -1.45 10.01 -26.72 -0.27 -1.72 16 28 O -0.37 -3.06 7.75 -35.23 -0.27 -3.33 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.42 7.85 -51.93 -0.41 0.02 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.35 8.03 -51.93 -0.42 -0.06 16 37 H 0.09 0.74 6.22 -51.93 -0.32 0.41 16 38 H 0.09 0.74 5.99 -51.93 -0.31 0.43 16 39 H 0.04 0.37 7.94 -51.93 -0.41 -0.04 16 40 H 0.06 0.77 6.62 -51.93 -0.34 0.43 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 43 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.14 1.31 5.40 -51.93 -0.28 1.03 16 47 H 0.10 0.76 5.87 -51.93 -0.30 0.45 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.86 7.86 -51.93 -0.41 0.45 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -33.87 406.40 -10.77 -44.64 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.62 Total: 1.62 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.77 Total: -8.16 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.61 Total: -41.22 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.18 Total: -14.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.87 -10.77 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663704963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.161 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds