Wall clock time and date at job start Wed Apr 1 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00248 * 2 1 4 4 H 1.48498 * 109.47241 * 270.00459 * 3 2 1 5 5 H 1.48507 * 109.46702 * 30.00348 * 3 2 1 6 6 H 1.48502 * 109.47136 * 149.99776 * 3 2 1 7 7 C 1.38814 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99707 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99578 * 179.97438 * 9 7 2 11 11 H 1.08992 * 110.47275 * 36.19045 * 10 9 7 12 12 C 1.56004 * 110.52527 * 273.54619 * 10 9 7 13 13 C 1.56341 * 105.83691 * 234.24255 * 12 10 9 14 14 C 1.51681 * 101.75906 * 334.65224 * 13 12 10 15 15 H 1.09003 * 111.48418 * 288.27907 * 14 13 12 16 16 C 1.51528 * 123.36920 * 151.97898 * 14 13 12 17 17 N 1.49621 * 102.49536 * 208.28468 * 16 14 13 18 18 C 1.34775 * 126.07151 * 205.62203 * 17 16 14 19 19 O 1.21551 * 119.99692 * 174.03289 * 18 17 16 20 20 C 1.47827 * 120.00112 * 354.04159 * 18 17 16 21 21 C 1.39957 * 120.93911 * 343.83183 * 20 18 17 22 22 N 1.32141 * 118.92228 * 179.71870 * 21 20 18 23 23 C 1.31873 * 120.96769 * 0.57409 * 22 21 20 24 24 C 1.50700 * 118.95354 * 179.67873 * 23 22 21 25 25 C 1.53005 * 117.49902 * 8.64118 * 24 23 22 26 26 C 1.52998 * 60.00112 * 252.51002 * 25 24 23 27 27 N 1.31865 * 122.09736 * 359.69884 * 23 22 21 28 28 C 1.32147 * 120.96553 * 0.02562 * 27 23 22 29 29 C 1.49294 * 107.85502 * 25.65013 * 17 16 14 30 30 C 1.49711 * 110.64009 * 158.91170 * 10 9 7 31 31 H 1.08995 * 108.54810 * 41.87809 * 30 10 9 32 32 H 0.97004 * 119.99363 * 359.97438 * 1 2 3 33 33 H 0.96992 * 119.99786 * 0.02562 * 9 7 2 34 34 H 1.09000 * 110.19231 * 353.35565 * 12 10 9 35 35 H 1.09004 * 110.19091 * 115.13471 * 12 10 9 36 36 H 1.08997 * 110.96230 * 92.72875 * 13 12 10 37 37 H 1.08998 * 110.96409 * 216.47150 * 13 12 10 38 38 H 1.08998 * 110.80065 * 90.03220 * 16 14 13 39 39 H 1.09006 * 110.96554 * 326.61687 * 16 14 13 40 40 H 1.07999 * 120.53676 * 359.97438 * 21 20 18 41 41 H 1.09000 * 115.55459 * 154.35190 * 24 23 22 42 42 H 1.09003 * 117.49633 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.50139 * 145.01724 * 25 24 23 44 44 H 1.08993 * 117.49817 * 252.50410 * 26 25 24 45 45 H 1.09007 * 117.49810 * 107.48890 * 26 25 24 46 46 H 1.08005 * 120.53504 * 180.02562 * 28 27 23 47 47 H 1.08995 * 110.39084 * 247.58774 * 29 17 16 48 48 H 1.08995 * 110.39332 * 125.18653 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9628 -3.5751 0.6006 12 6 2.4087 -4.0846 -1.4603 13 6 1.8449 -5.5332 -1.6273 14 6 1.8358 -6.0285 -0.1936 15 1 2.8460 -6.2153 0.1706 16 6 0.8677 -7.0746 0.3206 17 7 0.7438 -6.7173 1.7682 18 6 0.4148 -7.5591 2.7680 19 8 0.4512 -7.1767 3.9212 20 6 0.0098 -8.9475 2.4622 21 6 -0.3635 -9.3191 1.1655 22 7 -0.7131 -10.5725 0.9355 23 6 -0.7241 -11.4632 1.9079 24 6 -1.1375 -12.8785 1.5962 25 6 -1.3282 -13.2509 0.1245 26 6 -2.5454 -13.0967 1.0385 27 7 -0.3853 -11.1548 3.1444 28 6 -0.0173 -9.9261 3.4623 29 6 1.0488 -5.2626 1.9084 30 6 1.1903 -4.7676 0.5026 31 1 0.1948 -4.6518 0.0741 32 1 -0.4849 0.8401 0.0004 33 1 0.3556 -2.3880 -0.0005 34 1 1.9339 -3.4115 -2.1743 35 1 3.4893 -4.0827 -1.6035 36 1 0.8359 -5.5139 -2.0392 37 1 2.5057 -6.1399 -2.2465 38 1 1.2815 -8.0761 0.2030 39 1 -0.0964 -6.9944 -0.1819 40 1 -0.3619 -8.5941 0.3650 41 1 -0.7356 -13.6430 2.2612 42 1 -1.1542 -12.4723 -0.6183 43 1 -1.0514 -14.2606 -0.1791 44 1 -3.0696 -14.0048 1.3361 45 1 -3.1727 -12.2165 0.8970 46 1 0.2592 -9.6813 4.4772 47 1 1.9801 -5.1209 2.4566 48 1 0.2292 -4.7494 2.4111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026371237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:45 Heat of formation + Delta-G solvation = 86.478302 kcal Electronic energy + Delta-G solvation = -29266.009324 eV Core-core repulsion = 25323.254144 eV Total energy + Delta-G solvation = -3942.755180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74914 -40.54368 -38.73386 -37.36324 -35.61541 -34.19567 -33.46175 -32.45033 -30.99887 -29.60980 -28.69583 -26.27849 -25.67698 -24.81199 -23.52940 -23.00440 -22.75952 -21.69036 -20.54177 -20.00991 -19.28677 -18.20318 -17.45124 -17.23436 -16.97211 -16.46603 -15.68919 -15.54526 -15.26300 -14.90452 -14.77873 -14.55168 -14.15929 -13.86585 -13.78392 -13.58657 -13.12552 -12.91101 -12.65827 -12.42716 -12.06604 -11.97258 -11.79028 -11.66855 -11.49747 -11.28822 -11.24250 -11.09948 -10.91804 -10.86316 -10.83059 -10.55881 -10.24219 -10.18724 -10.06309 -9.84830 -9.71452 -9.64427 -9.62375 -8.95606 -8.82347 -7.02532 -5.81845 -3.11275 0.06385 0.65814 2.52810 2.58715 3.17424 3.29174 3.40595 3.46314 3.47781 3.55995 3.76371 3.93976 4.08723 4.25093 4.41250 4.47974 4.53251 4.56959 4.59228 4.74356 4.84291 4.99387 5.07601 5.10918 5.24033 5.26222 5.34825 5.39657 5.49309 5.50420 5.59975 5.65265 5.77196 5.78401 5.80285 5.85037 5.90352 5.92951 6.03996 6.06957 6.25375 6.26975 6.41067 6.48677 6.54358 6.72061 6.99201 7.26993 7.62383 7.66497 7.89249 8.36276 9.47864 10.03516 10.37912 11.40468 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.002154 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.402471 B =12997.154035 C =13578.880944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.200 3.800 11 H 0.054 0.946 12 C -0.143 4.143 13 C -0.100 4.100 14 C -0.127 4.127 15 H 0.089 0.911 16 C 0.104 3.896 17 N -0.617 5.617 18 C 0.583 3.417 19 O -0.531 6.531 20 C -0.243 4.243 21 C 0.170 3.830 22 N -0.518 5.518 23 C 0.364 3.636 24 C -0.109 4.109 25 C -0.151 4.151 26 C -0.153 4.153 27 N -0.517 5.517 28 C 0.211 3.789 29 C 0.136 3.864 30 C -0.120 4.120 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.189 0.811 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.182 0.818 47 H 0.074 0.926 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -26.337 -0.993 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.088 3.912 11 H 0.072 0.928 12 C -0.184 4.184 13 C -0.138 4.138 14 C -0.147 4.147 15 H 0.108 0.892 16 C -0.018 4.018 17 N -0.351 5.351 18 C 0.370 3.630 19 O -0.408 6.408 20 C -0.250 4.250 21 C 0.004 3.996 22 N -0.232 5.232 23 C 0.099 3.901 24 C -0.129 4.129 25 C -0.189 4.189 26 C -0.191 4.191 27 N -0.230 5.230 28 C 0.044 3.956 29 C 0.015 3.985 30 C -0.140 4.140 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.205 0.795 41 H 0.149 0.851 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.199 0.801 47 H 0.092 0.908 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.263 -26.944 -0.461 26.977 hybrid contribution 0.400 1.922 0.210 1.975 sum -0.863 -25.021 -0.251 25.038 Atomic orbital electron populations 1.69657 1.05115 1.25740 1.57454 1.24752 0.95508 0.97741 1.02825 0.86205 0.78701 0.83866 0.77493 1.21728 1.21794 1.20733 1.19225 0.91020 0.84032 1.42945 0.91111 1.42482 1.05666 0.99629 1.88255 1.19928 0.93733 0.84788 0.92711 0.92755 1.23802 0.99935 0.94109 1.00597 1.21888 1.01396 0.97151 0.93363 1.22630 0.99039 0.94805 0.98187 0.89246 1.22177 0.99669 0.98972 0.80974 1.49739 1.67929 1.10464 1.06983 1.17362 0.77642 0.83633 0.84374 1.90816 1.53731 1.76990 1.19266 1.21761 1.08843 0.97024 0.97379 1.24392 0.86852 0.92907 0.95458 1.68224 1.16729 1.02272 1.35970 1.22428 0.88347 0.94943 0.84400 1.20711 1.02354 0.90359 0.99477 1.23058 1.00869 1.03311 0.91660 1.23008 0.89720 1.03772 1.02626 1.68282 1.13688 1.20189 1.20858 1.23498 0.86230 0.86050 0.99811 1.21044 1.02051 0.77903 0.97461 1.22098 1.01747 0.96175 0.93948 0.90480 0.93468 0.78160 0.90605 0.92610 0.91393 0.92006 0.90161 0.90068 0.79501 0.85065 0.86988 0.87971 0.87699 0.88422 0.80079 0.90786 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.39 9.97 -15.06 -0.15 -6.54 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -16.82 5.12 -53.45 -0.27 -17.09 16 10 C 0.20 3.55 3.42 -67.95 -0.23 3.32 16 11 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 12 C -0.14 -2.21 6.73 -23.33 -0.16 -2.36 16 13 C -0.10 -1.14 6.61 -25.60 -0.17 -1.31 16 14 C -0.13 -1.42 3.14 -89.39 -0.28 -1.70 16 15 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.10 1.00 4.63 -3.05 -0.01 0.99 16 17 N -0.62 -7.79 3.43 -172.68 -0.59 -8.38 16 18 C 0.58 8.00 7.77 -12.34 -0.10 7.91 16 19 O -0.53 -9.04 16.93 5.32 0.09 -8.95 16 20 C -0.24 -2.79 5.83 -104.69 -0.61 -3.40 16 21 C 0.17 1.71 9.47 -16.78 -0.16 1.55 16 22 N -0.52 -5.43 9.32 -10.39 -0.10 -5.53 16 23 C 0.36 3.85 7.31 -157.07 -1.15 2.70 16 24 C -0.11 -0.86 6.23 -91.77 -0.57 -1.43 16 25 C -0.15 -0.95 10.01 -26.73 -0.27 -1.21 16 26 C -0.15 -0.97 10.23 -26.73 -0.27 -1.25 16 27 N -0.52 -5.90 10.31 -10.39 -0.11 -6.01 16 28 C 0.21 2.37 10.88 -16.78 -0.18 2.19 16 29 C 0.14 1.98 6.83 -4.12 -0.03 1.95 16 30 C -0.12 -1.74 2.21 -91.23 -0.20 -1.94 16 31 H 0.08 1.18 7.74 -51.93 -0.40 0.78 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.38 9.63 7.66 -40.82 -0.31 9.31 16 34 H 0.08 1.35 7.98 -51.93 -0.41 0.94 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.65 6.43 -51.93 -0.33 0.31 16 39 H 0.08 0.68 7.22 -51.93 -0.38 0.31 16 40 H 0.19 1.51 4.08 -52.49 -0.21 1.30 16 41 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 0.81 7.53 -51.93 -0.39 0.41 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.18 1.81 7.82 -52.48 -0.41 1.40 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -31.67 387.95 -11.12 -42.79 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.05 Total: 8.05 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.64 Total: -0.96 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.34 Total: -63.66 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.67 -11.12 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026371237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.270 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds