Wall clock time and date at job start Wed Apr 1 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00248 * 2 1 4 4 H 1.48498 * 109.47241 * 270.00459 * 3 2 1 5 5 H 1.48507 * 109.46702 * 30.00348 * 3 2 1 6 6 H 1.48502 * 109.47136 * 149.99776 * 3 2 1 7 7 C 1.38814 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99707 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99578 * 179.97438 * 9 7 2 11 11 H 1.08992 * 110.47275 * 36.19045 * 10 9 7 12 12 C 1.56004 * 110.52527 * 273.54619 * 10 9 7 13 13 C 1.56341 * 105.83691 * 234.24255 * 12 10 9 14 14 C 1.51681 * 101.75906 * 334.65224 * 13 12 10 15 15 H 1.09003 * 111.48418 * 288.27907 * 14 13 12 16 16 C 1.51528 * 123.36920 * 151.97898 * 14 13 12 17 17 N 1.49621 * 102.49536 * 208.28468 * 16 14 13 18 18 C 1.34775 * 126.07151 * 205.62203 * 17 16 14 19 19 O 1.21551 * 119.99692 * 174.03289 * 18 17 16 20 20 C 1.47827 * 120.00112 * 354.04159 * 18 17 16 21 21 C 1.39957 * 120.93911 * 343.83183 * 20 18 17 22 22 N 1.32141 * 118.92228 * 179.71870 * 21 20 18 23 23 C 1.31873 * 120.96769 * 0.57409 * 22 21 20 24 24 C 1.50700 * 118.95354 * 179.67873 * 23 22 21 25 25 C 1.53005 * 117.49902 * 8.64118 * 24 23 22 26 26 C 1.52998 * 60.00112 * 252.51002 * 25 24 23 27 27 N 1.31865 * 122.09736 * 359.69884 * 23 22 21 28 28 C 1.32147 * 120.96553 * 0.02562 * 27 23 22 29 29 C 1.49294 * 107.85502 * 25.65013 * 17 16 14 30 30 C 1.49711 * 110.64009 * 158.91170 * 10 9 7 31 31 H 1.08995 * 108.54810 * 41.87809 * 30 10 9 32 32 H 0.97004 * 119.99363 * 359.97438 * 1 2 3 33 33 H 0.96992 * 119.99786 * 0.02562 * 9 7 2 34 34 H 1.09000 * 110.19231 * 353.35565 * 12 10 9 35 35 H 1.09004 * 110.19091 * 115.13471 * 12 10 9 36 36 H 1.08997 * 110.96230 * 92.72875 * 13 12 10 37 37 H 1.08998 * 110.96409 * 216.47150 * 13 12 10 38 38 H 1.08998 * 110.80065 * 90.03220 * 16 14 13 39 39 H 1.09006 * 110.96554 * 326.61687 * 16 14 13 40 40 H 1.07999 * 120.53676 * 359.97438 * 21 20 18 41 41 H 1.09000 * 115.55459 * 154.35190 * 24 23 22 42 42 H 1.09003 * 117.49633 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.50139 * 145.01724 * 25 24 23 44 44 H 1.08993 * 117.49817 * 252.50410 * 26 25 24 45 45 H 1.09007 * 117.49810 * 107.48890 * 26 25 24 46 46 H 1.08005 * 120.53504 * 180.02562 * 28 27 23 47 47 H 1.08995 * 110.39084 * 247.58774 * 29 17 16 48 48 H 1.08995 * 110.39332 * 125.18653 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9628 -3.5751 0.6006 12 6 2.4087 -4.0846 -1.4603 13 6 1.8449 -5.5332 -1.6273 14 6 1.8358 -6.0285 -0.1936 15 1 2.8460 -6.2153 0.1706 16 6 0.8677 -7.0746 0.3206 17 7 0.7438 -6.7173 1.7682 18 6 0.4148 -7.5591 2.7680 19 8 0.4512 -7.1767 3.9212 20 6 0.0098 -8.9475 2.4622 21 6 -0.3635 -9.3191 1.1655 22 7 -0.7131 -10.5725 0.9355 23 6 -0.7241 -11.4632 1.9079 24 6 -1.1375 -12.8785 1.5962 25 6 -1.3282 -13.2509 0.1245 26 6 -2.5454 -13.0967 1.0385 27 7 -0.3853 -11.1548 3.1444 28 6 -0.0173 -9.9261 3.4623 29 6 1.0488 -5.2626 1.9084 30 6 1.1903 -4.7676 0.5026 31 1 0.1948 -4.6518 0.0741 32 1 -0.4849 0.8401 0.0004 33 1 0.3556 -2.3880 -0.0005 34 1 1.9339 -3.4115 -2.1743 35 1 3.4893 -4.0827 -1.6035 36 1 0.8359 -5.5139 -2.0392 37 1 2.5057 -6.1399 -2.2465 38 1 1.2815 -8.0761 0.2030 39 1 -0.0964 -6.9944 -0.1819 40 1 -0.3619 -8.5941 0.3650 41 1 -0.7356 -13.6430 2.2612 42 1 -1.1542 -12.4723 -0.6183 43 1 -1.0514 -14.2606 -0.1791 44 1 -3.0696 -14.0048 1.3361 45 1 -3.1727 -12.2165 0.8970 46 1 0.2592 -9.6813 4.4772 47 1 1.9801 -5.1209 2.4566 48 1 0.2292 -4.7494 2.4111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026371237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:44 Heat of formation + Delta-G solvation = 67.342171 kcal Electronic energy + Delta-G solvation = -29266.839129 eV Core-core repulsion = 25323.254144 eV Total energy + Delta-G solvation = -3943.584985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61228 -41.58945 -39.85186 -37.95340 -36.95836 -35.30595 -34.85363 -33.33628 -32.68477 -30.76222 -29.94665 -27.36091 -26.83413 -25.75960 -24.87662 -24.43153 -23.22168 -22.40823 -21.57090 -21.07480 -20.55276 -19.15514 -19.05025 -18.26561 -17.91899 -17.57177 -16.74263 -16.62899 -16.31640 -16.03451 -15.78792 -15.63005 -15.39512 -15.18371 -14.79658 -14.73005 -14.45474 -14.11279 -13.70536 -13.35411 -13.20103 -13.15318 -13.00690 -12.71779 -12.58971 -12.50322 -12.35466 -12.17391 -12.13161 -12.04643 -11.93016 -11.83875 -11.59468 -11.41699 -11.35418 -11.14702 -11.01530 -10.88889 -10.51078 -10.43453 -9.89097 -8.97709 -7.93198 -5.20605 -0.78141 -0.15692 1.47561 1.48495 1.54108 1.55064 1.56692 2.42310 2.56657 2.59068 2.80849 2.91482 3.11520 3.23455 3.35118 3.41155 3.61296 3.67422 3.83851 3.91591 3.93643 4.01714 4.08736 4.14561 4.27191 4.30127 4.35648 4.47226 4.52125 4.56991 4.62607 4.68136 4.76325 4.80897 4.85610 4.90754 4.96048 4.99116 5.08827 5.11723 5.18282 5.25079 5.33396 5.37428 5.49985 5.52628 5.65647 5.67024 6.24487 6.29533 6.80604 6.83720 7.35728 8.12594 8.34299 9.30074 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.002154 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.402471 B =12997.154035 C =13578.880944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.733 5.733 10 C 0.189 3.811 11 H 0.044 0.956 12 C -0.138 4.138 13 C -0.085 4.085 14 C -0.104 4.104 15 H 0.094 0.906 16 C 0.103 3.897 17 N -0.614 5.614 18 C 0.584 3.416 19 O -0.574 6.574 20 C -0.252 4.252 21 C 0.181 3.819 22 N -0.522 5.522 23 C 0.359 3.641 24 C -0.128 4.128 25 C -0.139 4.139 26 C -0.147 4.147 27 N -0.531 5.531 28 C 0.208 3.792 29 C 0.139 3.861 30 C -0.123 4.123 31 H 0.071 0.929 32 H 0.249 0.751 33 H 0.372 0.628 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.210 0.790 41 H 0.140 0.860 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.185 0.815 47 H 0.065 0.935 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -29.229 -2.705 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.373 5.373 10 C 0.080 3.920 11 H 0.062 0.938 12 C -0.178 4.178 13 C -0.123 4.123 14 C -0.124 4.124 15 H 0.113 0.887 16 C -0.016 4.016 17 N -0.346 5.346 18 C 0.372 3.628 19 O -0.454 6.454 20 C -0.260 4.260 21 C 0.014 3.986 22 N -0.235 5.235 23 C 0.094 3.906 24 C -0.148 4.148 25 C -0.177 4.177 26 C -0.185 4.185 27 N -0.244 5.244 28 C 0.041 3.959 29 C 0.018 3.982 30 C -0.143 4.143 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.205 0.795 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.226 0.774 41 H 0.158 0.842 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.105 0.895 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.529 -29.896 -2.210 29.982 hybrid contribution 0.218 2.726 0.757 2.838 sum -0.311 -27.170 -1.453 27.210 Atomic orbital electron populations 1.69807 1.06498 1.25824 1.59886 1.25501 0.96314 1.00911 1.04205 0.85223 0.77717 0.79978 0.77360 1.21425 1.22651 1.19591 1.19595 0.91380 0.85264 1.40338 0.90687 1.42676 1.05297 1.00868 1.88429 1.20197 0.93448 0.83665 0.94650 0.93762 1.23592 1.00517 0.96404 0.97336 1.21809 1.02336 0.94370 0.93810 1.22587 0.99443 0.92925 0.97430 0.88725 1.22434 1.00648 0.99762 0.78806 1.49705 1.67300 1.09304 1.08333 1.17668 0.76899 0.84368 0.83834 1.90791 1.55673 1.77909 1.21047 1.21527 1.10525 0.95577 0.98329 1.24701 0.85488 0.93188 0.95192 1.68342 1.17057 1.02319 1.35785 1.23024 0.87261 0.96131 0.84137 1.20904 1.03776 0.89110 1.01011 1.23131 1.00128 1.04153 0.90289 1.23088 0.89144 1.04168 1.02074 1.68358 1.14496 1.20080 1.21499 1.23631 0.85868 0.86211 1.00155 1.20830 1.00756 0.79363 0.97283 1.21852 1.01151 0.96907 0.94354 0.91067 0.94220 0.79546 0.93323 0.91656 0.90613 0.88859 0.87309 0.87842 0.77364 0.84186 0.87834 0.85794 0.85660 0.89535 0.79760 0.91677 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.69 13.06 21.65 0.28 -58.40 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.23 -12.58 9.97 84.03 0.84 -11.74 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.73 -35.09 5.12 -323.02 -1.66 -36.75 16 10 C 0.19 6.74 3.42 44.98 0.15 6.90 16 11 H 0.04 1.65 8.11 -2.39 -0.02 1.63 16 12 C -0.14 -4.05 6.73 32.80 0.22 -3.82 16 13 C -0.09 -1.65 6.61 31.32 0.21 -1.44 16 14 C -0.10 -2.02 3.14 -9.99 -0.03 -2.05 16 15 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 16 C 0.10 1.65 4.63 85.29 0.39 2.04 16 17 N -0.61 -14.78 3.43 -818.52 -2.80 -17.58 16 18 C 0.58 15.77 7.77 86.78 0.67 16.44 16 19 O -0.57 -20.06 16.93 -3.88 -0.07 -20.12 16 20 C -0.25 -5.48 5.83 -19.91 -0.12 -5.60 16 21 C 0.18 3.18 9.47 85.06 0.81 3.98 16 22 N -0.52 -9.69 9.32 -186.80 -1.74 -11.43 16 23 C 0.36 6.97 7.31 138.71 1.01 7.98 16 24 C -0.13 -1.73 6.23 -11.54 -0.07 -1.81 16 25 C -0.14 -1.35 10.01 30.60 0.31 -1.04 16 26 C -0.15 -1.51 10.23 30.59 0.31 -1.19 16 27 N -0.53 -11.56 10.31 -186.79 -1.93 -13.49 16 28 C 0.21 4.56 10.88 85.06 0.93 5.49 16 29 C 0.14 4.11 6.83 84.78 0.58 4.69 16 30 C -0.12 -3.50 2.21 -11.19 -0.02 -3.53 16 31 H 0.07 2.15 7.74 -2.39 -0.02 2.13 16 32 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.37 19.35 7.66 -92.71 -0.71 18.64 16 34 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16 35 H 0.06 1.77 8.14 -2.38 -0.02 1.76 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.23 6.43 -2.39 -0.02 1.22 16 39 H 0.10 1.29 7.22 -2.38 -0.02 1.27 16 40 H 0.21 2.57 4.08 -2.91 -0.01 2.56 16 41 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.10 1.21 7.53 -2.39 -0.02 1.19 16 43 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.19 3.75 7.82 -2.91 -0.02 3.72 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.31 387.95 1.05 -70.26 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.28 Total: 28.26 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.65 Total: 11.40 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -7.84 Total: -137.65 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.12 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -71.31 1.05 -70.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026371237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.598 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds