Wall clock time and date at job start Wed Apr 1 2020 02:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47410 * 300.00315 * 3 2 1 6 6 H 1.48506 * 109.46965 * 60.00121 * 3 2 1 7 7 C 1.38814 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.47087 * 125.62747 * 0.02562 * 9 7 2 11 11 C 1.54458 * 107.29583 * 178.99092 * 10 9 7 12 12 C 1.54396 * 102.87316 * 338.49490 * 11 10 9 13 13 C 1.47571 * 125.63225 * 179.97438 * 9 7 2 14 14 C 1.52106 * 110.50510 * 152.62805 * 12 11 10 15 15 C 1.53343 * 109.43912 * 64.09724 * 14 12 11 16 16 N 1.46924 * 108.69003 * 53.29952 * 15 14 12 17 17 C 1.34783 * 120.55274 * 125.63438 * 16 15 14 18 18 O 1.21279 * 119.99473 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00120 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.46976 * 180.02562 * 19 17 16 21 21 C 1.53784 * 113.61270 * 272.49523 * 20 19 17 22 22 C 1.53779 * 87.08045 * 220.02125 * 21 20 19 23 23 F 1.39897 * 113.61581 * 270.88458 * 22 21 20 24 24 F 1.39904 * 113.61600 * 139.98502 * 22 21 20 25 25 C 1.53779 * 87.08402 * 25.43458 * 22 21 20 26 26 C 1.46935 * 118.89864 * 305.90870 * 16 15 14 27 27 C 1.52100 * 110.51623 * 276.65779 * 12 11 10 28 28 H 0.96999 * 120.00214 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.87686 * 59.56499 * 10 9 7 30 30 H 1.08996 * 109.87937 * 298.41484 * 10 9 7 31 31 H 1.09003 * 110.72865 * 220.15490 * 11 10 9 32 32 H 1.09002 * 110.73585 * 96.84347 * 11 10 9 33 33 H 1.08999 * 110.37513 * 84.50983 * 13 9 7 34 34 H 1.09008 * 110.37383 * 322.16924 * 13 9 7 35 35 H 1.08996 * 109.47633 * 304.10966 * 14 12 11 36 36 H 1.08997 * 109.47807 * 184.08616 * 14 12 11 37 37 H 1.08999 * 109.60200 * 293.53590 * 15 14 12 38 38 H 1.09004 * 109.60168 * 173.05805 * 15 14 12 39 39 H 1.08998 * 109.46935 * 59.99667 * 19 17 16 40 40 H 1.09003 * 109.46788 * 299.99764 * 19 17 16 41 41 H 1.08994 * 112.91116 * 43.74893 * 20 19 17 42 42 H 1.09002 * 113.61478 * 334.57090 * 21 20 19 43 43 H 1.09004 * 113.61162 * 105.47268 * 21 20 19 44 44 H 1.08997 * 113.61646 * 220.02209 * 25 22 21 45 45 H 1.08998 * 113.69354 * 89.12517 * 25 22 21 46 46 H 1.09003 * 109.60165 * 173.84762 * 26 16 15 47 47 H 1.09003 * 109.60163 * 294.32399 * 26 16 15 48 48 H 1.09009 * 109.47615 * 55.89755 * 27 12 11 49 49 H 1.08995 * 109.47905 * 175.90895 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1381 -2.5323 -0.0005 11 6 -0.4504 -4.0448 -0.0261 12 6 0.8509 -4.6553 -0.5896 13 6 1.9346 -3.7323 0.0005 14 6 1.0296 -6.0814 -0.0917 15 6 -0.1061 -6.9574 -0.6341 16 7 -0.1621 -6.8048 -2.0943 17 6 -0.1062 -7.8848 -2.8987 18 8 -0.0084 -8.9941 -2.4184 19 6 -0.1641 -7.7138 -4.3949 20 6 -0.0833 -9.0852 -5.0684 21 6 1.3562 -9.5606 -5.3270 22 6 0.8537 -10.0934 -6.6791 23 9 0.3782 -11.4079 -6.6218 24 9 1.7505 -9.8842 -7.7323 25 6 -0.2565 -9.0326 -6.5955 26 6 -0.2739 -5.4547 -2.6634 27 6 0.8571 -4.5878 -2.1091 28 1 -0.4850 0.8400 0.0004 29 1 -0.5572 -2.0524 -0.8849 30 1 -0.5555 -2.0829 0.9005 31 1 -1.2922 -4.2538 -0.6863 32 1 -0.6465 -4.4154 0.9801 33 1 2.1802 -4.0376 1.0176 34 1 2.8264 -3.7449 -0.6262 35 1 1.0075 -6.0914 0.9980 36 1 1.9865 -6.4706 -0.4395 37 1 -1.0530 -6.6408 -0.1968 38 1 0.0848 -8.0007 -0.3826 39 1 0.6730 -7.0976 -4.7228 40 1 -1.1013 -7.2294 -4.6692 41 1 -0.7098 -9.8337 -4.5834 42 1 2.0751 -8.7464 -5.4184 43 1 1.6866 -10.3438 -4.6445 44 1 -1.2281 -9.3895 -6.9372 45 1 0.0201 -8.0736 -7.0336 46 1 -0.1936 -5.5077 -3.7492 47 1 -1.2341 -5.0195 -2.3863 48 1 0.7145 -3.5551 -2.4276 49 1 1.8116 -4.9556 -2.4854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035198021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:06 Heat of formation + Delta-G solvation = -93.792368 kcal Electronic energy + Delta-G solvation = -30886.216356 eV Core-core repulsion = 26484.954867 eV Total energy + Delta-G solvation = -4401.261490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.08074 -47.41897 -40.61652 -39.10936 -37.87216 -35.78551 -33.19581 -31.73355 -30.62535 -30.00712 -28.76247 -26.74491 -26.61421 -24.42840 -23.69132 -23.24650 -22.27318 -20.39855 -20.13797 -19.69946 -18.04184 -17.66479 -17.22165 -16.86225 -16.67063 -16.40486 -16.06500 -15.49583 -15.08643 -14.86622 -14.61270 -14.29402 -14.02662 -13.85624 -13.73581 -13.68608 -13.56328 -13.38371 -12.93444 -12.89685 -12.74573 -12.47482 -12.19360 -11.95141 -11.80311 -11.57281 -11.48374 -11.22272 -11.10992 -11.07637 -10.96215 -10.74482 -10.73080 -10.63745 -10.22339 -10.05133 -9.87660 -9.78182 -9.68349 -9.59720 -8.63209 -8.56622 -6.84075 -5.73850 -3.06630 2.54151 2.91151 3.16912 3.36910 3.43103 3.45086 3.46186 3.90455 3.99162 4.00326 4.47273 4.47714 4.74490 4.84725 4.94419 4.98381 5.03861 5.04774 5.10024 5.15969 5.20992 5.31467 5.35089 5.42782 5.44575 5.45572 5.47095 5.55850 5.69178 5.76876 5.90256 5.93776 5.95083 6.07027 6.12658 6.17469 6.27680 6.39944 6.51160 6.58715 6.60809 6.79405 6.91203 7.37167 7.54608 7.60587 7.80653 8.09558 8.23629 9.20421 9.80672 10.47170 11.37781 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002261 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.523474 B =12382.139351 C =13117.860066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.180 3.820 11 C -0.137 4.137 12 C -0.071 4.071 13 C 0.146 3.854 14 C -0.116 4.116 15 C 0.114 3.886 16 N -0.606 5.606 17 C 0.514 3.486 18 O -0.548 6.548 19 C -0.130 4.130 20 C -0.087 4.087 21 C -0.158 4.158 22 C 0.252 3.748 23 F -0.180 7.180 24 F -0.193 7.193 25 C -0.162 4.162 26 C 0.105 3.895 27 C -0.111 4.111 28 H 0.251 0.749 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -17.392 -10.894 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.072 4.072 13 C 0.020 3.980 14 C -0.154 4.154 15 C -0.008 4.008 16 N -0.339 5.339 17 C 0.302 3.698 18 O -0.426 6.426 19 C -0.170 4.170 20 C -0.106 4.106 21 C -0.196 4.196 22 C 0.215 3.785 23 F -0.161 7.161 24 F -0.174 7.174 25 C -0.200 4.200 26 C -0.018 4.018 27 C -0.150 4.150 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.372 -17.764 -10.661 20.853 hybrid contribution 0.522 0.977 -0.062 1.109 sum -1.850 -16.788 -10.723 20.006 Atomic orbital electron populations 1.69972 1.04832 1.24821 1.57376 1.24779 0.95701 0.97587 1.02441 0.86076 0.78738 0.83921 0.77229 1.20563 1.21800 1.21819 1.19094 0.90420 0.82472 1.43384 0.90541 1.44520 1.01651 0.99786 1.87131 1.21138 0.84290 0.88248 1.00799 1.22937 0.95708 0.99539 0.99343 1.21014 0.97968 0.93578 0.94644 1.21473 0.93954 0.85971 0.96634 1.21727 0.98152 0.94824 1.00730 1.21638 0.99129 1.01130 0.78938 1.48173 1.72105 1.06576 1.07033 1.20527 0.76042 0.84160 0.89038 1.90677 1.50371 1.24645 1.76919 1.21651 1.05009 0.97943 0.92383 1.22167 0.96982 0.97803 0.93628 1.24178 0.98856 1.02894 0.93714 1.22110 0.89596 0.79869 0.86901 1.93018 1.88460 1.38043 1.96597 1.93011 1.69477 1.94469 1.60418 1.24194 0.99129 0.99265 0.97446 1.21858 1.00344 0.81562 0.98021 1.21556 0.97441 1.00742 0.95212 0.93879 0.93754 0.94279 0.92269 0.92571 0.96465 0.94563 0.90710 0.91976 0.91359 0.89410 0.88235 0.88055 0.86816 0.87084 0.88512 0.88685 0.86770 0.90074 0.90696 0.89260 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.31 55.49 0.57 -25.74 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.08 10.28 -15.06 -0.15 -6.23 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.62 3.39 -170.33 -0.58 -15.20 16 10 C 0.18 4.09 5.00 -2.96 -0.01 4.08 16 11 C -0.14 -2.30 4.92 -25.23 -0.12 -2.43 16 12 C -0.07 -1.09 0.55 -154.12 -0.08 -1.17 16 13 C 0.15 2.83 6.15 -2.88 -0.02 2.81 16 14 C -0.12 -1.50 4.84 -27.01 -0.13 -1.63 16 15 C 0.11 1.37 6.16 -3.63 -0.02 1.35 16 16 N -0.61 -6.91 2.97 -172.84 -0.51 -7.43 16 17 C 0.51 5.85 7.70 -10.98 -0.08 5.76 16 18 O -0.55 -8.00 15.16 5.56 0.08 -7.91 16 19 C -0.13 -0.97 3.88 -27.89 -0.11 -1.08 16 20 C -0.09 -0.67 3.13 -89.80 -0.28 -0.95 16 21 C -0.16 -1.29 7.42 -25.92 -0.19 -1.48 16 22 C 0.25 2.21 3.27 -25.92 -0.08 2.12 16 23 F -0.18 -1.91 17.38 2.25 0.04 -1.87 16 24 F -0.19 -1.96 17.41 2.25 0.04 -1.92 16 25 C -0.16 -1.02 7.43 -25.92 -0.19 -1.22 16 26 C 0.10 1.11 6.01 -3.85 -0.02 1.09 16 27 C -0.11 -1.53 4.84 -27.24 -0.13 -1.66 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.04 1.11 7.39 -51.93 -0.38 0.73 16 30 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 31 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 32 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 33 H 0.02 0.35 7.99 -51.93 -0.41 -0.07 16 34 H 0.04 0.70 8.02 -51.92 -0.42 0.28 16 35 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.80 7.62 -51.93 -0.40 0.41 16 38 H 0.09 1.11 6.99 -51.93 -0.36 0.75 16 39 H 0.10 0.62 7.39 -51.93 -0.38 0.23 16 40 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 41 H 0.11 1.04 7.68 -51.93 -0.40 0.64 16 42 H 0.11 0.77 7.90 -51.93 -0.41 0.36 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 46 H 0.08 0.65 5.92 -51.93 -0.31 0.34 16 47 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 48 H 0.09 1.46 7.82 -51.92 -0.41 1.05 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -31.43 380.29 -9.22 -40.66 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.83 Total: -1.98 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.74 Total: -0.97 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.52 Total: -48.36 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.08 Total: -7.91 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.08 Total: -3.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.43 -9.22 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035198021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.134 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds