Wall clock time and date at job start Wed Apr 1 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99824 * 2 1 4 4 H 1.48496 * 109.46717 * 353.63429 * 3 2 1 5 5 H 1.48493 * 109.47210 * 113.63435 * 3 2 1 6 6 H 1.48500 * 109.47167 * 233.63786 * 3 2 1 7 7 C 1.38814 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99930 * 29.44683 * 7 2 1 9 9 N 1.36941 * 119.99956 * 209.44917 * 7 2 1 10 10 C 1.47428 * 126.05801 * 356.49685 * 9 7 2 11 11 C 1.54525 * 107.13698 * 178.26843 * 10 9 7 12 12 C 1.56028 * 102.69930 * 337.50777 * 11 10 9 13 13 H 1.09004 * 113.50309 * 157.15704 * 12 11 10 14 14 C 1.53089 * 106.39232 * 281.40586 * 12 11 10 15 15 C 1.52839 * 110.58470 * 164.55363 * 14 12 11 16 16 N 1.47150 * 107.97552 * 302.65685 * 15 14 12 17 17 C 1.34780 * 121.21849 * 237.27700 * 16 15 14 18 18 O 1.21549 * 119.99598 * 184.42908 * 17 16 15 19 19 C 1.47832 * 120.00289 * 4.42651 * 17 16 15 20 20 C 1.39954 * 120.93613 * 318.40613 * 19 17 16 21 21 N 1.32149 * 118.92062 * 179.68916 * 20 19 17 22 22 C 1.31869 * 120.96414 * 0.61785 * 21 20 19 23 23 C 1.50704 * 118.94618 * 179.67455 * 22 21 20 24 24 C 1.52998 * 117.50272 * 8.59930 * 23 22 21 25 25 C 1.52994 * 59.99958 * 252.50908 * 24 23 22 26 26 N 1.31861 * 122.09774 * 359.65256 * 22 21 20 27 27 C 1.32151 * 120.97026 * 0.02562 * 26 22 21 28 28 C 1.46757 * 117.56085 * 57.29937 * 16 15 14 29 29 C 1.46467 * 126.05727 * 176.80611 * 9 7 2 30 30 H 1.09004 * 108.42138 * 90.72794 * 29 9 7 31 31 H 0.97006 * 119.99322 * 174.96279 * 1 2 3 32 32 H 1.09000 * 109.90794 * 297.78237 * 10 9 7 33 33 H 1.09003 * 109.90338 * 59.02479 * 10 9 7 34 34 H 1.09000 * 110.91837 * 219.11529 * 11 10 9 35 35 H 1.08999 * 110.72581 * 95.81132 * 11 10 9 36 36 H 1.08992 * 109.25372 * 44.26715 * 14 12 11 37 37 H 1.09003 * 109.22334 * 284.81737 * 14 12 11 38 38 H 1.08997 * 109.76158 * 183.03585 * 15 14 12 39 39 H 1.09002 * 109.79865 * 62.30138 * 15 14 12 40 40 H 1.08004 * 120.54112 * 359.97438 * 20 19 17 41 41 H 1.09006 * 115.54522 * 154.31226 * 23 22 21 42 42 H 1.08997 * 117.49464 * 0.02562 * 24 23 22 43 43 H 1.08997 * 117.49567 * 145.01674 * 24 23 22 44 44 H 1.09005 * 117.49822 * 252.50635 * 25 24 23 45 45 H 1.09004 * 117.49788 * 107.48972 * 25 24 23 46 46 H 1.07999 * 120.53821 * 179.97438 * 27 26 22 47 47 H 1.08999 * 109.22937 * 187.13314 * 28 16 15 48 48 H 1.09000 * 109.19342 * 67.75839 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2925 2.7421 -0.1552 5 1 2.9837 1.7659 1.2826 6 1 3.2165 1.6315 -1.1275 7 6 2.0103 -1.2021 0.0005 8 1 1.5750 -2.0772 -0.4589 9 7 3.2470 -1.2784 0.5836 10 6 3.9950 -0.1575 1.1816 11 6 5.3105 -0.7383 1.7473 12 6 4.9625 -2.2463 1.9453 13 1 5.8375 -2.8962 1.9591 14 6 4.1463 -2.3353 3.2374 15 6 3.4343 -3.6845 3.3314 16 7 2.5874 -3.8352 2.1375 17 6 1.2600 -4.0429 2.2443 18 8 0.5943 -4.2445 1.2475 19 6 0.6137 -4.0256 3.5738 20 6 1.2219 -4.6345 4.6774 21 7 0.6118 -4.5897 5.8488 22 6 -0.5571 -3.9940 5.9826 23 6 -1.2158 -3.9763 7.3379 24 6 -0.3959 -4.4774 8.5285 25 6 -1.5459 -5.3249 7.9807 26 7 -1.1676 -3.4130 4.9685 27 6 -0.6261 -3.4049 3.7630 28 6 3.2412 -3.7516 0.8263 29 6 4.0637 -2.4867 0.7181 30 1 4.7080 -2.5663 -0.1576 31 1 -0.4849 -0.8369 -0.0738 32 1 4.2146 0.5906 0.4199 33 1 3.4125 0.2896 1.9872 34 1 5.5643 -0.2718 2.6992 35 1 6.1238 -0.6199 1.0313 36 1 3.4053 -1.5362 3.2502 37 1 4.8133 -2.2207 4.0918 38 1 2.8155 -3.7129 4.2282 39 1 4.1696 -4.4884 3.3655 40 1 2.1766 -5.1288 4.5745 41 1 -1.9074 -3.1523 7.5137 42 1 0.6201 -4.8195 8.3316 43 1 -0.5478 -3.9830 9.4879 44 1 -2.4544 -5.3881 8.5797 45 1 -1.2865 -6.2250 7.4232 46 1 -1.1325 -2.9273 2.9372 47 1 2.4808 -3.7532 0.0453 48 1 3.8924 -4.6157 0.6948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042261663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:54 Heat of formation + Delta-G solvation = 100.422294 kcal Electronic energy + Delta-G solvation = -31283.892021 eV Core-core repulsion = 27341.741498 eV Total energy + Delta-G solvation = -3942.150523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42818 -39.97438 -38.29374 -37.11709 -35.39774 -33.83197 -32.99180 -32.24356 -31.27512 -29.65882 -28.77300 -26.14556 -24.97117 -24.34157 -23.81839 -22.63391 -22.51089 -21.57592 -20.75439 -20.25437 -18.41324 -18.06575 -17.22346 -17.13153 -16.85200 -15.87045 -15.55545 -15.10828 -15.06975 -14.80841 -14.55462 -14.28276 -14.17719 -13.69724 -13.50806 -13.24314 -13.03964 -12.87850 -12.44548 -12.28200 -11.97765 -11.84264 -11.72401 -11.67023 -11.48727 -11.36264 -11.01372 -10.90001 -10.84191 -10.70543 -10.67095 -10.29785 -10.08795 -9.91946 -9.65458 -9.52102 -9.32362 -9.22275 -9.01384 -8.36467 -8.22769 -7.02116 -6.26998 -3.04663 0.50780 0.98560 2.89277 3.16083 3.42776 3.48359 3.53939 3.61473 3.72282 3.87155 4.03634 4.41972 4.52741 4.64492 4.66663 4.76868 4.79756 4.84840 4.86299 4.96194 5.01523 5.19827 5.21047 5.31600 5.41614 5.43175 5.49858 5.59152 5.60625 5.70139 5.75918 5.79166 5.83867 5.88008 5.88600 5.99550 6.04406 6.16126 6.21707 6.25055 6.33015 6.47778 6.58973 6.67346 6.79414 6.81200 6.91423 7.67984 7.76451 7.96459 8.43864 8.46093 9.13594 9.69335 10.33962 11.24095 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.003885 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.762484 B = 7205.513937 C = 7854.159259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 1.051 2.949 4 H -0.302 1.302 5 H -0.283 1.283 6 H -0.300 1.300 7 C -0.327 4.327 8 H 0.084 0.916 9 N -0.596 5.596 10 C 0.116 3.884 11 C -0.128 4.128 12 C -0.100 4.100 13 H 0.083 0.917 14 C -0.124 4.124 15 C 0.093 3.907 16 N -0.586 5.586 17 C 0.577 3.423 18 O -0.519 6.519 19 C -0.228 4.228 20 C 0.172 3.828 21 N -0.522 5.522 22 C 0.356 3.644 23 C -0.104 4.104 24 C -0.152 4.152 25 C -0.155 4.155 26 N -0.513 5.513 27 C 0.213 3.787 28 C 0.120 3.880 29 C 0.156 3.844 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.026 0.974 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.178 0.822 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.182 0.818 47 H 0.098 0.902 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -10.325 15.178 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.885 3.115 4 H -0.230 1.230 5 H -0.210 1.210 6 H -0.228 1.228 7 C -0.454 4.454 8 H 0.101 0.899 9 N -0.323 5.323 10 C -0.009 4.009 11 C -0.166 4.166 12 C -0.120 4.120 13 H 0.102 0.898 14 C -0.162 4.162 15 C -0.030 4.030 16 N -0.318 5.318 17 C 0.363 3.637 18 O -0.394 6.394 19 C -0.236 4.236 20 C 0.005 3.995 21 N -0.236 5.236 22 C 0.090 3.910 23 C -0.124 4.124 24 C -0.190 4.190 25 C -0.193 4.193 26 N -0.225 5.225 27 C 0.047 3.953 28 C -0.003 4.003 29 C 0.047 3.953 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.195 0.805 41 H 0.149 0.851 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.199 0.801 47 H 0.116 0.884 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.063 -8.748 15.506 18.808 hybrid contribution 0.816 -1.318 -1.218 1.972 sum 6.879 -10.066 14.288 18.783 Atomic orbital electron populations 1.70910 1.05868 1.30123 1.48535 1.25518 0.96080 1.00563 0.99672 0.84137 0.74199 0.76721 0.76429 1.22985 1.21003 1.22824 1.19954 0.90490 0.98413 1.36529 0.89878 1.44624 1.18234 1.01341 1.68095 1.21986 0.91314 0.91624 0.95954 1.22864 0.97877 0.95404 1.00412 1.22417 0.97547 0.96636 0.95421 0.89837 1.21840 0.99542 0.97663 0.97141 1.22165 0.94172 0.98291 0.88413 1.47633 1.06182 1.70469 1.07499 1.17548 0.81669 0.77202 0.87298 1.90807 1.62656 1.48455 1.37527 1.21825 0.99400 1.05448 0.96899 1.23576 0.97604 0.91803 0.86486 1.68115 1.10305 1.19480 1.25667 1.22298 0.87067 0.87583 0.94034 1.20666 1.03756 1.00587 0.87354 1.23024 0.97713 1.02438 0.95843 1.22982 1.00285 0.93326 1.02703 1.68261 1.35562 1.18899 0.99813 1.23517 0.89221 0.88441 0.94162 1.21364 0.97280 0.96663 0.85007 1.20658 0.91466 0.88324 0.94817 0.95280 0.92584 0.95646 0.93906 0.91519 0.91814 0.90402 0.91667 0.89738 0.90992 0.80495 0.85137 0.87136 0.88134 0.87867 0.88558 0.80116 0.88376 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.75 13.70 55.49 0.76 -27.99 16 2 C -0.02 -0.50 5.46 -17.43 -0.10 -0.60 16 3 Si 1.05 26.61 24.81 -169.99 -4.22 22.39 16 4 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 5 H -0.28 -6.54 5.11 56.52 0.29 -6.25 16 6 H -0.30 -7.41 7.10 56.52 0.40 -7.01 16 7 C -0.33 -9.09 9.84 -15.06 -0.15 -9.24 16 8 H 0.08 2.53 6.79 -52.49 -0.36 2.17 16 9 N -0.60 -13.80 3.17 -164.41 -0.52 -14.32 16 10 C 0.12 2.44 3.81 -2.73 -0.01 2.43 16 11 C -0.13 -1.98 6.32 -24.31 -0.15 -2.14 16 12 C -0.10 -1.45 3.68 -88.43 -0.33 -1.78 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.12 -1.72 5.04 -26.77 -0.13 -1.85 16 15 C 0.09 1.17 5.33 -3.77 -0.02 1.15 16 16 N -0.59 -9.79 2.97 -175.21 -0.52 -10.31 16 17 C 0.58 10.95 7.40 -12.33 -0.09 10.86 16 18 O -0.52 -11.94 16.44 5.32 0.09 -11.86 16 19 C -0.23 -3.74 5.38 -104.69 -0.56 -4.31 16 20 C 0.17 2.28 8.69 -16.77 -0.15 2.13 16 21 N -0.52 -7.03 9.32 -10.39 -0.10 -7.12 16 22 C 0.36 5.06 7.31 -157.07 -1.15 3.91 16 23 C -0.10 -1.13 6.23 -91.77 -0.57 -1.70 16 24 C -0.15 -1.30 10.01 -26.74 -0.27 -1.57 16 25 C -0.15 -1.34 10.23 -26.74 -0.27 -1.61 16 26 N -0.51 -8.36 10.31 -10.40 -0.11 -8.47 16 27 C 0.21 3.69 10.98 -16.78 -0.18 3.51 16 28 C 0.12 2.12 5.67 -4.78 -0.03 2.09 16 29 C 0.16 2.86 2.97 -68.30 -0.20 2.66 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.26 8.40 8.73 -40.82 -0.36 8.04 16 32 H 0.03 0.57 4.99 -51.93 -0.26 0.32 16 33 H 0.04 0.98 6.04 -51.93 -0.31 0.67 16 34 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.39 6.88 -51.93 -0.36 1.03 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.01 3.80 -51.93 -0.20 0.81 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.18 1.80 6.19 -52.48 -0.32 1.47 16 41 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.11 1.03 7.53 -51.93 -0.39 0.63 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.18 3.30 8.06 -52.49 -0.42 2.87 16 47 H 0.10 2.12 5.58 -51.93 -0.29 1.83 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -34.29 368.38 -10.25 -44.54 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.82 Total: 3.63 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -4.36 Total: 3.95 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.49 Total: -68.21 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.22 Total: 22.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.29 -10.25 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042261663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.963 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds