Wall clock time and date at job start Wed Apr 1 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99824 * 2 1 4 4 H 1.48496 * 109.46717 * 353.63429 * 3 2 1 5 5 H 1.48493 * 109.47210 * 113.63435 * 3 2 1 6 6 H 1.48500 * 109.47167 * 233.63786 * 3 2 1 7 7 C 1.38814 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99930 * 29.44683 * 7 2 1 9 9 N 1.36941 * 119.99956 * 209.44917 * 7 2 1 10 10 C 1.47428 * 126.05801 * 356.49685 * 9 7 2 11 11 C 1.54525 * 107.13698 * 178.26843 * 10 9 7 12 12 C 1.56028 * 102.69930 * 337.50777 * 11 10 9 13 13 H 1.09004 * 113.50309 * 157.15704 * 12 11 10 14 14 C 1.53089 * 106.39232 * 281.40586 * 12 11 10 15 15 C 1.52839 * 110.58470 * 164.55363 * 14 12 11 16 16 N 1.47150 * 107.97552 * 302.65685 * 15 14 12 17 17 C 1.34780 * 121.21849 * 237.27700 * 16 15 14 18 18 O 1.21549 * 119.99598 * 184.42908 * 17 16 15 19 19 C 1.47832 * 120.00289 * 4.42651 * 17 16 15 20 20 C 1.39954 * 120.93613 * 318.40613 * 19 17 16 21 21 N 1.32149 * 118.92062 * 179.68916 * 20 19 17 22 22 C 1.31869 * 120.96414 * 0.61785 * 21 20 19 23 23 C 1.50704 * 118.94618 * 179.67455 * 22 21 20 24 24 C 1.52998 * 117.50272 * 8.59930 * 23 22 21 25 25 C 1.52994 * 59.99958 * 252.50908 * 24 23 22 26 26 N 1.31861 * 122.09774 * 359.65256 * 22 21 20 27 27 C 1.32151 * 120.97026 * 0.02562 * 26 22 21 28 28 C 1.46757 * 117.56085 * 57.29937 * 16 15 14 29 29 C 1.46467 * 126.05727 * 176.80611 * 9 7 2 30 30 H 1.09004 * 108.42138 * 90.72794 * 29 9 7 31 31 H 0.97006 * 119.99322 * 174.96279 * 1 2 3 32 32 H 1.09000 * 109.90794 * 297.78237 * 10 9 7 33 33 H 1.09003 * 109.90338 * 59.02479 * 10 9 7 34 34 H 1.09000 * 110.91837 * 219.11529 * 11 10 9 35 35 H 1.08999 * 110.72581 * 95.81132 * 11 10 9 36 36 H 1.08992 * 109.25372 * 44.26715 * 14 12 11 37 37 H 1.09003 * 109.22334 * 284.81737 * 14 12 11 38 38 H 1.08997 * 109.76158 * 183.03585 * 15 14 12 39 39 H 1.09002 * 109.79865 * 62.30138 * 15 14 12 40 40 H 1.08004 * 120.54112 * 359.97438 * 20 19 17 41 41 H 1.09006 * 115.54522 * 154.31226 * 23 22 21 42 42 H 1.08997 * 117.49464 * 0.02562 * 24 23 22 43 43 H 1.08997 * 117.49567 * 145.01674 * 24 23 22 44 44 H 1.09005 * 117.49822 * 252.50635 * 25 24 23 45 45 H 1.09004 * 117.49788 * 107.48972 * 25 24 23 46 46 H 1.07999 * 120.53821 * 179.97438 * 27 26 22 47 47 H 1.08999 * 109.22937 * 187.13314 * 28 16 15 48 48 H 1.09000 * 109.19342 * 67.75839 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2925 2.7421 -0.1552 5 1 2.9837 1.7659 1.2826 6 1 3.2165 1.6315 -1.1275 7 6 2.0103 -1.2021 0.0005 8 1 1.5750 -2.0772 -0.4589 9 7 3.2470 -1.2784 0.5836 10 6 3.9950 -0.1575 1.1816 11 6 5.3105 -0.7383 1.7473 12 6 4.9625 -2.2463 1.9453 13 1 5.8375 -2.8962 1.9591 14 6 4.1463 -2.3353 3.2374 15 6 3.4343 -3.6845 3.3314 16 7 2.5874 -3.8352 2.1375 17 6 1.2600 -4.0429 2.2443 18 8 0.5943 -4.2445 1.2475 19 6 0.6137 -4.0256 3.5738 20 6 1.2219 -4.6345 4.6774 21 7 0.6118 -4.5897 5.8488 22 6 -0.5571 -3.9940 5.9826 23 6 -1.2158 -3.9763 7.3379 24 6 -0.3959 -4.4774 8.5285 25 6 -1.5459 -5.3249 7.9807 26 7 -1.1676 -3.4130 4.9685 27 6 -0.6261 -3.4049 3.7630 28 6 3.2412 -3.7516 0.8263 29 6 4.0637 -2.4867 0.7181 30 1 4.7080 -2.5663 -0.1576 31 1 -0.4849 -0.8369 -0.0738 32 1 4.2146 0.5906 0.4199 33 1 3.4125 0.2896 1.9872 34 1 5.5643 -0.2718 2.6992 35 1 6.1238 -0.6199 1.0313 36 1 3.4053 -1.5362 3.2502 37 1 4.8133 -2.2207 4.0918 38 1 2.8155 -3.7129 4.2282 39 1 4.1696 -4.4884 3.3655 40 1 2.1766 -5.1288 4.5745 41 1 -1.9074 -3.1523 7.5137 42 1 0.6201 -4.8195 8.3316 43 1 -0.5478 -3.9830 9.4879 44 1 -2.4544 -5.3881 8.5797 45 1 -1.2865 -6.2250 7.4232 46 1 -1.1325 -2.9273 2.9372 47 1 2.4808 -3.7532 0.0453 48 1 3.8924 -4.6157 0.6948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042261663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:53 Heat of formation + Delta-G solvation = 75.980692 kcal Electronic energy + Delta-G solvation = -31284.951888 eV Core-core repulsion = 27341.741498 eV Total energy + Delta-G solvation = -3943.210391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63994 -41.31747 -39.75267 -37.97763 -36.88337 -35.09304 -34.80526 -33.50651 -32.93129 -31.11673 -30.28051 -27.37606 -26.29242 -25.76246 -25.43098 -23.89080 -23.22145 -22.64156 -22.31346 -21.62054 -19.86635 -19.25746 -19.16504 -18.36875 -18.03459 -17.30764 -16.92580 -16.62153 -16.21386 -16.11836 -15.82051 -15.70020 -15.37006 -15.14942 -14.90017 -14.82463 -14.48431 -14.31169 -13.90387 -13.44884 -13.43309 -13.12686 -13.04792 -12.86160 -12.75180 -12.58299 -12.34516 -12.22274 -12.03714 -11.95168 -11.86036 -11.68891 -11.46577 -11.43259 -11.29879 -10.95124 -10.84130 -10.53620 -10.45521 -10.40492 -9.63822 -9.03450 -8.61801 -5.27949 -0.69923 -0.23896 1.35721 1.46682 1.47312 1.66124 1.92282 2.38508 2.54516 2.58516 2.77985 3.03034 3.09298 3.21269 3.28857 3.39957 3.71470 3.74907 3.79059 3.84155 3.89112 3.93345 4.09441 4.15568 4.27394 4.30187 4.35797 4.47385 4.50228 4.52868 4.56456 4.72343 4.79172 4.79513 4.85368 4.90331 4.93662 5.02212 5.05573 5.10453 5.17124 5.22687 5.32661 5.32960 5.53498 5.54898 5.62187 5.73215 6.14203 6.32687 6.77919 6.90677 7.03416 7.60222 8.21761 8.90277 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.003885 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.762484 B = 7205.513937 C = 7854.159259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.086 4.086 3 Si 1.096 2.904 4 H -0.318 1.318 5 H -0.246 1.246 6 H -0.289 1.289 7 C -0.291 4.291 8 H 0.039 0.961 9 N -0.616 5.616 10 C 0.105 3.895 11 C -0.115 4.115 12 C -0.082 4.082 13 H 0.137 0.863 14 C -0.123 4.123 15 C 0.087 3.913 16 N -0.582 5.582 17 C 0.567 3.433 18 O -0.581 6.581 19 C -0.244 4.244 20 C 0.196 3.804 21 N -0.512 5.512 22 C 0.354 3.646 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.142 4.142 26 N -0.533 5.533 27 C 0.193 3.807 28 C 0.120 3.880 29 C 0.141 3.859 30 H 0.037 0.963 31 H 0.239 0.761 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.220 0.780 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.042 0.958 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.306 -11.668 19.264 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.279 4.279 3 Si 0.925 3.075 4 H -0.248 1.248 5 H -0.171 1.171 6 H -0.216 1.216 7 C -0.420 4.420 8 H 0.057 0.943 9 N -0.343 5.343 10 C -0.019 4.019 11 C -0.153 4.153 12 C -0.101 4.101 13 H 0.155 0.845 14 C -0.161 4.161 15 C -0.034 4.034 16 N -0.313 5.313 17 C 0.355 3.645 18 O -0.461 6.461 19 C -0.251 4.251 20 C 0.028 3.972 21 N -0.225 5.225 22 C 0.089 3.911 23 C -0.153 4.153 24 C -0.170 4.170 25 C -0.180 4.180 26 N -0.246 5.246 27 C 0.027 3.973 28 C -0.003 4.003 29 C 0.034 3.966 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.236 0.764 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.107 0.893 46 H 0.167 0.833 47 H 0.060 0.940 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.275 -10.117 19.645 24.808 hybrid contribution -0.757 -1.037 -2.475 2.789 sum 10.518 -11.155 17.170 23.019 Atomic orbital electron populations 1.71049 1.07284 1.28504 1.53193 1.26795 0.96069 1.04239 1.00790 0.83592 0.73174 0.72345 0.78423 1.24755 1.17067 1.21638 1.19640 0.92290 0.96221 1.33845 0.94295 1.44669 1.17450 1.04605 1.67567 1.22110 0.93826 0.91150 0.94861 1.22858 0.94750 0.95733 1.01970 1.22491 0.97964 0.96757 0.92886 0.84530 1.21864 0.99168 0.96387 0.98719 1.22593 0.94494 0.99736 0.86549 1.47802 1.05791 1.68934 1.08762 1.18019 0.82429 0.76577 0.87524 1.90770 1.64207 1.51455 1.39696 1.21617 0.99321 1.07306 0.96870 1.24134 0.98230 0.89831 0.84967 1.68296 1.09876 1.19146 1.25196 1.23048 0.87216 0.86111 0.94678 1.20866 1.05517 1.02469 0.86496 1.23141 0.97267 1.01183 0.95418 1.23099 1.01508 0.91586 1.01838 1.68272 1.36290 1.20291 0.99764 1.23191 0.90183 0.89619 0.94314 1.21315 0.96279 0.98465 0.84251 1.21057 0.91491 0.86373 0.97678 0.94564 0.95126 0.96593 0.96209 0.88624 0.89711 0.95250 0.87073 0.89070 0.85653 0.76361 0.84873 0.87466 0.85646 0.85584 0.89255 0.83263 0.93981 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.33 13.70 21.65 0.30 -65.03 16 2 C -0.09 -5.35 5.46 84.86 0.46 -4.88 16 3 Si 1.10 55.92 24.81 68.60 1.70 57.62 16 4 H -0.32 -16.98 7.11 99.48 0.71 -16.27 16 5 H -0.25 -10.99 5.11 99.48 0.51 -10.49 16 6 H -0.29 -13.99 7.10 99.48 0.71 -13.28 16 7 C -0.29 -17.25 9.84 84.03 0.83 -16.43 16 8 H 0.04 2.63 6.79 -2.91 -0.02 2.61 16 9 N -0.62 -28.78 3.17 -674.07 -2.14 -30.92 16 10 C 0.10 4.22 3.81 86.72 0.33 4.56 16 11 C -0.12 -2.98 6.32 32.16 0.20 -2.78 16 12 C -0.08 -1.89 3.68 -9.38 -0.03 -1.93 16 13 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 14 C -0.12 -2.80 5.04 30.57 0.15 -2.65 16 15 C 0.09 1.81 5.33 86.20 0.46 2.26 16 16 N -0.58 -19.01 2.97 -826.53 -2.45 -21.46 16 17 C 0.57 22.78 7.40 86.78 0.64 23.42 16 18 O -0.58 -29.71 16.44 -3.87 -0.06 -29.78 16 19 C -0.24 -8.32 5.38 -19.91 -0.11 -8.43 16 20 C 0.20 4.81 8.69 85.06 0.74 5.55 16 21 N -0.51 -12.75 9.32 -186.79 -1.74 -14.49 16 22 C 0.35 9.91 7.31 138.71 1.01 10.93 16 23 C -0.13 -2.71 6.23 -11.54 -0.07 -2.78 16 24 C -0.13 -1.83 10.01 30.59 0.31 -1.53 16 25 C -0.14 -2.09 10.23 30.59 0.31 -1.77 16 26 N -0.53 -18.38 10.31 -186.80 -1.93 -20.30 16 27 C 0.19 7.37 10.98 85.06 0.93 8.30 16 28 C 0.12 4.19 5.67 85.76 0.49 4.68 16 29 C 0.14 4.89 2.97 44.77 0.13 5.02 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.24 16.99 8.73 -92.70 -0.81 16.18 16 32 H 0.02 0.70 4.99 -2.39 -0.01 0.68 16 33 H 0.02 0.89 6.04 -2.39 -0.01 0.88 16 34 H 0.10 2.00 7.97 -2.39 -0.02 1.98 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.03 0.97 6.88 -2.39 -0.02 0.95 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.79 3.80 -2.39 -0.01 1.78 16 39 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.22 3.43 6.19 -2.91 -0.02 3.41 16 41 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.11 1.60 7.53 -2.39 -0.02 1.58 16 43 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 46 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 47 H 0.04 1.95 5.58 -2.39 -0.01 1.94 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -88.55 368.38 1.22 -87.33 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.75 Total: 15.48 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.79 Total: 21.55 kcal Atomic # 7 Polarization: -144.24 SS G_CDS: -7.96 Total: -152.21 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.06 Total: -29.78 kcal Atomic # 14 Polarization: 55.92 SS G_CDS: 1.70 Total: 57.62 kcal Total: -88.55 1.22 -87.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042261663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.313 kcal (2) G-P(sol) polarization free energy of solvation -88.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds