Wall clock time and date at job start Wed Apr 1 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47474 * 125.66794 * 359.74958 * 9 7 2 11 11 C 1.55252 * 105.05752 * 200.93375 * 10 9 7 12 12 C 1.54526 * 100.54455 * 323.80914 * 11 10 9 13 13 H 1.09004 * 107.31753 * 284.34362 * 12 11 10 14 14 C 1.49436 * 112.96300 * 165.80961 * 12 11 10 15 15 C 1.51481 * 114.09007 * 284.25931 * 14 12 11 16 16 N 1.44753 * 111.69861 * 317.16178 * 15 14 12 17 17 C 1.34777 * 117.18611 * 213.75374 * 16 15 14 18 18 O 1.21279 * 120.00424 * 179.97438 * 17 16 15 19 19 C 1.50705 * 120.00015 * 0.02562 * 17 16 15 20 20 C 1.52993 * 109.47225 * 179.97438 * 19 17 16 21 21 H 1.08992 * 110.01947 * 54.29921 * 20 19 17 22 22 C 1.54274 * 110.03188 * 175.69038 * 20 19 17 23 23 C 1.54892 * 104.19396 * 142.89409 * 22 20 19 24 24 C 1.54889 * 102.75024 * 322.05452 * 23 22 20 25 25 C 1.53880 * 110.03327 * 292.90386 * 20 19 17 26 26 F 1.39897 * 110.03120 * 0.02562 * 25 20 19 27 27 F 1.39902 * 110.02908 * 121.43255 * 25 20 19 28 28 C 1.43781 * 125.63512 * 33.73948 * 16 15 14 29 29 C 1.48295 * 125.66470 * 179.44049 * 9 7 2 30 30 H 1.09002 * 109.25827 * 301.39679 * 29 9 7 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.32208 * 319.83062 * 10 9 7 33 33 H 1.09002 * 110.32512 * 82.04214 * 10 9 7 34 34 H 1.09004 * 111.19798 * 81.62971 * 11 10 9 35 35 H 1.08993 * 111.19792 * 205.93663 * 11 10 9 36 36 H 1.08999 * 108.56210 * 45.45439 * 14 12 11 37 37 H 1.09005 * 108.55750 * 163.21348 * 14 12 11 38 38 H 1.09004 * 109.03750 * 77.73390 * 15 14 12 39 39 H 1.08998 * 109.04104 * 196.66378 * 15 14 12 40 40 H 1.08998 * 109.46771 * 299.99888 * 19 17 16 41 41 H 1.08997 * 109.46810 * 59.99273 * 19 17 16 42 42 H 1.08993 * 110.48341 * 261.56896 * 22 20 19 43 43 H 1.08995 * 110.48247 * 24.08556 * 22 20 19 44 44 H 1.09001 * 110.75742 * 80.37607 * 23 22 20 45 45 H 1.09002 * 110.75270 * 203.74562 * 23 22 20 46 46 H 1.09002 * 110.48724 * 156.62084 * 24 23 22 47 47 H 1.09004 * 110.49025 * 279.13508 * 24 23 22 48 48 H 1.08992 * 108.06378 * 99.10907 * 28 16 15 49 49 H 1.09006 * 108.05966 * 215.60583 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1421 -2.5335 -0.0080 11 6 -0.4054 -3.9695 0.5203 12 6 0.7860 -4.7255 -0.1095 13 1 0.5604 -4.8633 -1.1670 14 6 1.0004 -6.0779 0.4890 15 6 1.6467 -6.0524 1.8587 16 7 2.7347 -5.0996 1.9196 17 6 3.7834 -5.4118 2.7065 18 8 4.7232 -4.6503 2.7949 19 6 3.7887 -6.7077 3.4759 20 6 5.0838 -6.8162 4.2832 21 1 5.2080 -5.9331 4.9098 22 6 5.0557 -8.0859 5.1590 23 6 6.5157 -8.6022 5.1263 24 6 6.9463 -8.3176 3.6660 25 6 6.2860 -6.9623 3.3339 26 9 5.8506 -6.9535 2.0044 27 9 7.1947 -5.9203 3.5477 28 6 2.7935 -3.8490 1.2126 29 6 1.9365 -3.7392 -0.0198 30 1 2.5693 -3.8391 -0.9017 31 1 -0.4850 0.8401 0.0004 32 1 -0.5961 -1.7970 0.6548 33 1 -0.5324 -2.4250 -1.0200 34 1 -0.3624 -4.0029 1.6090 35 1 -1.3564 -4.3559 0.1540 36 1 0.0355 -6.5784 0.5698 37 1 1.6354 -6.6572 -0.1814 38 1 0.8958 -5.7824 2.6013 39 1 2.0323 -7.0457 2.0885 40 1 2.9349 -6.7316 4.1530 41 1 3.7237 -7.5438 2.7796 42 1 4.7611 -7.8393 6.1790 43 1 4.3775 -8.8265 4.7354 44 1 7.1378 -8.0464 5.8279 45 1 6.5523 -9.6707 5.3385 46 1 8.0313 -8.2400 3.5964 47 1 6.5771 -9.0978 3.0003 48 1 2.5008 -3.0571 1.9020 49 1 3.8292 -3.6736 0.9216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085016921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:57 Heat of formation + Delta-G solvation = -108.891056 kcal Electronic energy + Delta-G solvation = -32194.323637 eV Core-core repulsion = 27792.407419 eV Total energy + Delta-G solvation = -4401.916218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.77980 -46.83342 -40.37075 -38.51214 -37.43505 -35.34542 -33.10018 -32.27343 -31.39372 -29.41981 -28.50189 -28.08880 -26.23158 -24.73400 -23.60715 -22.62981 -21.58022 -20.71160 -20.29854 -19.39944 -17.76950 -17.35509 -17.15881 -16.93356 -16.67312 -16.18120 -15.56834 -15.32025 -14.88181 -14.70646 -14.49960 -14.29914 -14.08278 -13.89146 -13.72043 -13.35842 -13.22477 -12.92190 -12.89082 -12.53621 -12.39667 -12.14532 -11.96460 -11.83959 -11.62999 -11.57636 -11.47598 -11.41325 -11.26464 -11.09886 -11.01215 -10.78460 -10.74077 -10.57721 -10.03515 -9.94732 -9.84744 -9.60903 -9.48184 -9.44939 -8.63299 -8.10753 -6.86995 -5.64894 -3.05083 2.91188 3.32343 3.43368 3.49722 3.52688 3.65590 3.77980 4.02746 4.15724 4.49989 4.59207 4.69417 4.78150 4.88687 4.91196 5.00155 5.05689 5.08426 5.14341 5.22084 5.31742 5.38533 5.40122 5.46022 5.49823 5.53653 5.61086 5.61759 5.68053 5.77861 5.80732 5.94226 5.96376 6.02859 6.10661 6.22603 6.27408 6.51259 6.60375 6.67646 6.86297 7.04840 7.16780 7.53604 7.65864 7.71698 7.86462 8.33204 8.51814 9.23288 9.82716 10.47028 11.40571 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.003232 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.988464 B = 8660.122354 C = 9828.793231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.140 4.140 12 C -0.091 4.091 13 H 0.065 0.935 14 C -0.112 4.112 15 C 0.113 3.887 16 N -0.589 5.589 17 C 0.498 3.502 18 O -0.534 6.534 19 C -0.134 4.134 20 C -0.119 4.119 21 H 0.108 0.892 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.294 3.706 26 F -0.196 7.196 27 F -0.191 7.191 28 C 0.109 3.891 29 C 0.163 3.837 30 H 0.038 0.962 31 H 0.251 0.749 32 H 0.097 0.903 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -22.861 9.507 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.033 3.967 11 C -0.179 4.179 12 C -0.111 4.111 13 H 0.083 0.917 14 C -0.150 4.150 15 C -0.011 4.011 16 N -0.321 5.321 17 C 0.285 3.715 18 O -0.411 6.411 19 C -0.174 4.174 20 C -0.138 4.138 21 H 0.126 0.874 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.258 3.742 26 F -0.177 7.177 27 F -0.172 7.172 28 C -0.016 4.016 29 C 0.055 3.945 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.018 -22.122 9.444 24.795 hybrid contribution 0.409 1.057 -0.389 1.198 sum 6.427 -21.065 9.055 23.812 Atomic orbital electron populations 1.69874 1.04865 1.24678 1.57629 1.24766 0.95713 0.97652 1.02334 0.86026 0.78905 0.83638 0.77178 1.20384 1.21788 1.21743 1.19127 0.90628 0.82264 1.42982 0.90344 1.45030 1.01701 0.98988 1.86598 1.21843 0.84389 0.91598 0.98824 1.23034 0.95762 0.99307 0.99767 1.20600 0.96794 0.93365 1.00310 0.91701 1.20619 1.00852 0.97725 0.95818 1.20883 0.89665 0.92134 0.98414 1.46779 1.18779 1.20999 1.45564 1.20561 0.82421 0.87927 0.80569 1.90733 1.34603 1.51674 1.64063 1.21761 0.98463 0.97535 0.99598 1.22625 0.92848 1.01528 0.96846 0.87400 1.22437 0.97272 0.95689 1.00189 1.22462 0.96294 1.02063 0.95149 1.23418 1.02499 0.95243 0.99151 1.21598 0.87543 0.86091 0.79009 1.92990 1.90069 1.96913 1.37691 1.93030 1.68527 1.61079 1.94531 1.21240 1.01250 0.83360 0.95714 1.20167 0.92813 0.87192 0.94336 0.94442 0.93860 0.88551 0.96718 0.92332 0.92246 0.90647 0.92127 0.92303 0.90684 0.88073 0.88208 0.90057 0.90320 0.90431 0.90003 0.89121 0.88564 0.91107 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.16 55.49 0.56 -26.52 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.22 -6.27 9.58 -15.06 -0.14 -6.41 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.25 2.92 -164.22 -0.48 -15.73 16 10 C 0.16 3.81 5.75 -2.32 -0.01 3.79 16 11 C -0.14 -2.55 6.54 -24.74 -0.16 -2.71 16 12 C -0.09 -1.55 2.45 -92.19 -0.23 -1.78 16 13 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 14 C -0.11 -1.41 5.44 -29.26 -0.16 -1.57 16 15 C 0.11 1.38 5.88 -5.74 -0.03 1.35 16 16 N -0.59 -9.74 3.12 -179.61 -0.56 -10.30 16 17 C 0.50 8.16 6.42 -10.98 -0.07 8.09 16 18 O -0.53 -11.03 13.83 5.56 0.08 -10.96 16 19 C -0.13 -1.43 2.99 -27.88 -0.08 -1.52 16 20 C -0.12 -1.25 2.40 -89.50 -0.21 -1.46 16 21 H 0.11 1.31 7.82 -51.93 -0.41 0.91 16 22 C -0.12 -0.75 6.36 -25.07 -0.16 -0.91 16 23 C -0.12 -0.73 6.91 -24.74 -0.17 -0.90 16 24 C -0.17 -1.34 6.41 -25.02 -0.16 -1.50 16 25 C 0.29 3.66 1.79 -25.55 -0.05 3.62 16 26 F -0.20 -2.94 14.04 2.25 0.03 -2.91 16 27 F -0.19 -3.02 16.74 2.25 0.04 -2.98 16 28 C 0.11 2.25 5.31 -6.73 -0.04 2.22 16 29 C 0.16 3.42 3.42 -68.79 -0.24 3.19 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.10 2.62 6.10 -51.93 -0.32 2.31 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.68 5.83 -51.93 -0.30 0.38 16 40 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 41 H 0.10 0.90 6.75 -51.93 -0.35 0.55 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.39 7.85 -51.93 -0.41 -0.02 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 47 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.07 1.70 7.46 -51.93 -0.39 1.32 16 49 H 0.06 1.48 7.25 -51.93 -0.38 1.10 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -34.19 373.72 -9.73 -43.92 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.00 Total: -1.04 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.01 Total: 3.14 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.48 Total: -52.56 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.07 Total: -5.89 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.19 -9.73 -43.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085016921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.968 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds