Wall clock time and date at job start Wed Apr 1 2020 02:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40162 * 120.29633 * 2 1 4 4 C 1.35188 * 120.31723 * 180.02562 * 3 2 1 5 5 N 1.36237 * 120.71017 * 359.97438 * 4 3 2 6 6 N 1.40019 * 132.01362 * 180.02562 * 5 4 3 7 7 C 1.30747 * 109.60221 * 179.70324 * 6 5 4 8 8 C 1.40552 * 108.74600 * 0.41080 * 7 6 5 9 9 C 1.46566 * 126.57775 * 179.85995 * 8 7 6 10 10 O 1.21726 * 119.99617 * 209.77705 * 9 8 7 11 11 N 1.34768 * 120.00468 * 29.77657 * 9 8 7 12 12 C 1.46931 * 120.62838 * 356.27033 * 11 9 8 13 13 C 1.53197 * 108.77300 * 126.37201 * 12 11 9 14 14 C 1.53039 * 109.31353 * 54.63664 * 13 12 11 15 15 H 1.08997 * 109.44917 * 58.64751 * 14 13 12 16 16 N 1.46503 * 109.45892 * 178.61508 * 14 13 12 17 17 C 1.36926 * 119.99822 * 275.06702 * 16 14 13 18 18 H 1.08008 * 120.00603 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00189 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99603 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00415 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47136 * 59.99485 * 21 19 17 23 23 H 1.48496 * 109.47257 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46738 * 299.99984 * 21 19 17 25 25 C 1.53045 * 109.53574 * 298.63353 * 14 13 12 26 26 C 1.46927 * 120.63434 * 176.25185 * 11 9 8 27 27 H 1.08993 * 109.58706 * 113.83823 * 26 11 9 28 28 C 1.52997 * 109.58222 * 353.55929 * 26 11 9 29 29 C 1.36580 * 120.08218 * 359.97438 * 5 4 3 30 30 C 1.36452 * 120.29700 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46570 * 90.00283 * 1 2 3 32 32 H 1.08996 * 109.46894 * 209.99981 * 1 2 3 33 33 H 1.08999 * 109.46835 * 330.00188 * 1 2 3 34 34 H 1.07998 * 119.84026 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.64663 * 179.97438 * 4 3 2 36 36 H 1.08001 * 125.62572 * 180.25225 * 7 6 5 37 37 H 1.08999 * 109.58942 * 246.15597 * 12 11 9 38 38 H 1.08998 * 109.58692 * 6.58884 * 12 11 9 39 39 H 1.08993 * 109.49574 * 174.58896 * 13 12 11 40 40 H 1.09001 * 109.49746 * 294.68381 * 13 12 11 41 41 H 0.96998 * 119.99606 * 95.07045 * 16 14 13 42 42 H 0.97001 * 119.99658 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.49808 * 301.41422 * 25 14 13 44 44 H 1.09002 * 109.52131 * 181.33253 * 25 14 13 45 45 H 1.08996 * 109.47259 * 66.93692 * 28 26 11 46 46 H 1.08998 * 109.46999 * 186.93710 * 28 26 11 47 47 H 1.09000 * 109.47601 * 306.93319 * 28 26 11 48 48 H 1.08001 * 120.37323 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5660 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0005 6 7 5.6353 -0.2343 -0.0005 7 6 5.8245 -1.5280 0.0058 8 6 4.5729 -2.1676 0.0008 9 6 4.3307 -3.6131 0.0023 10 8 3.3303 -4.0631 -0.5254 11 7 5.2155 -4.4441 0.5878 12 6 6.4667 -3.9248 1.1570 13 6 6.5766 -4.3900 2.6125 14 6 6.4454 -5.9137 2.6682 15 1 7.2271 -6.3678 2.0592 16 7 6.5832 -6.3650 4.0552 17 6 7.8273 -6.5826 4.5839 18 1 8.7072 -6.4220 3.9785 19 6 7.9579 -7.0108 5.8979 20 7 6.8857 -7.2070 6.6357 21 14 9.6552 -7.3070 6.6196 22 1 10.4396 -6.0469 6.5732 23 1 9.5225 -7.7553 8.0291 24 1 10.3529 -8.3536 5.8303 25 6 5.0742 -6.3294 2.1305 26 6 4.9472 -5.8863 0.6696 27 1 5.6702 -6.4276 0.0594 28 6 3.5321 -6.1741 0.1643 29 6 3.5961 -1.1528 0.0005 30 6 2.1954 -1.1782 0.0005 31 1 -0.3632 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6763 2.1468 -0.0004 35 1 4.0998 2.1495 -0.0009 36 1 6.7841 -2.0234 0.0112 37 1 7.3136 -4.3063 0.5866 38 1 6.4601 -2.8355 1.1210 39 1 7.5441 -4.0930 3.0172 40 1 5.7802 -3.9345 3.2011 41 1 5.7930 -6.5097 4.5988 42 1 6.9769 -7.5059 7.5540 43 1 4.2920 -5.8557 2.7236 44 1 4.9718 -7.4128 2.1923 45 1 3.4774 -5.9621 -0.9034 46 1 3.2899 -7.2223 0.3395 47 1 2.8207 -5.5430 0.6970 48 1 1.6663 -2.1197 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044637310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:33 Heat of formation + Delta-G solvation = 108.323187 kcal Electronic energy + Delta-G solvation = -30099.083623 eV Core-core repulsion = 26157.275708 eV Total energy + Delta-G solvation = -3941.807915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.43488 -40.09779 -37.93599 -37.19352 -34.46420 -34.06589 -32.55660 -31.88488 -31.62415 -29.65463 -29.13657 -27.50471 -26.86369 -24.37050 -24.31722 -23.24525 -22.72794 -21.97207 -21.14449 -20.01658 -19.05896 -17.75768 -17.13110 -17.04577 -16.38203 -16.04550 -15.76678 -15.30901 -15.01284 -14.82540 -14.76315 -14.07313 -13.94917 -13.84306 -13.68543 -13.42451 -13.15923 -12.98567 -12.90313 -12.55521 -12.29961 -12.13168 -11.97337 -11.94054 -11.68841 -11.51143 -11.16821 -11.05458 -10.88019 -10.78212 -10.68309 -10.56814 -10.34922 -10.24701 -9.80922 -9.68855 -9.56716 -8.90744 -8.87229 -8.32360 -7.81273 -6.95653 -5.76006 -3.04933 0.36244 0.72766 1.89923 2.05321 2.87560 3.11906 3.43786 3.48192 3.49292 3.51780 3.94138 4.16739 4.25361 4.51424 4.58574 4.74298 4.84656 4.91860 5.03333 5.10917 5.17257 5.21488 5.25045 5.32696 5.40393 5.44416 5.51456 5.54655 5.61350 5.64540 5.70694 5.89325 5.95406 5.98539 6.06822 6.07830 6.14268 6.21958 6.32536 6.46414 6.51859 6.53343 6.55697 6.62350 6.82964 6.98091 7.10730 7.21749 7.68756 7.69879 8.42379 8.46561 9.53395 10.11562 10.46325 11.46573 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.002676 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.042225 B =10460.338655 C =11036.299622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.159 4.159 4 C 0.113 3.887 5 N -0.270 5.270 6 N -0.320 5.320 7 C 0.107 3.893 8 C -0.305 4.305 9 C 0.599 3.401 10 O -0.548 6.548 11 N -0.596 5.596 12 C 0.084 3.916 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.047 0.953 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.134 4.134 26 C 0.150 3.850 27 H 0.070 0.930 28 C -0.133 4.133 29 C 0.163 3.837 30 C -0.110 4.110 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.211 0.789 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.041 0.959 47 H 0.065 0.935 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.972 16.863 -16.796 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.181 4.181 4 C -0.013 4.013 5 N -0.035 5.035 6 N -0.141 5.141 7 C -0.072 4.072 8 C -0.319 4.319 9 C 0.388 3.612 10 O -0.428 6.428 11 N -0.329 5.329 12 C -0.039 4.039 13 C -0.190 4.190 14 C 0.069 3.931 15 H 0.065 0.935 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.173 4.173 26 C 0.047 3.953 27 H 0.088 0.912 28 C -0.190 4.190 29 C 0.042 3.958 30 C -0.129 4.129 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.189 0.811 36 H 0.227 0.773 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.570 17.678 -17.003 26.708 hybrid contribution 0.623 -0.842 0.897 1.379 sum -9.947 16.836 -16.106 25.334 Atomic orbital electron populations 1.20838 0.89463 1.03745 1.03168 1.20032 0.97361 0.92128 0.95552 1.20813 0.91840 0.99617 1.05796 1.21539 0.92033 0.88396 0.99326 1.46056 1.06397 1.05254 1.45754 1.77611 0.88057 1.17077 1.31388 1.24506 0.99149 0.90259 0.93289 1.19802 0.91394 0.93873 1.26843 1.16875 0.82530 0.83989 0.77763 1.90807 1.28966 1.76570 1.46499 1.47949 1.20346 1.07582 1.56990 1.22506 0.85443 1.00060 0.95922 1.22651 1.02600 1.00469 0.93329 1.20170 0.93984 0.91159 0.87805 0.93464 1.42425 1.06212 1.79765 1.08004 1.19188 0.85271 1.37602 0.94929 0.91231 1.24746 0.96973 1.02421 0.96829 1.69656 1.27010 1.52856 1.08609 0.86285 0.83883 0.77951 0.78169 1.21309 1.21743 1.21270 1.22290 0.99244 1.01522 0.94273 1.21279 0.98103 0.79129 0.96816 0.91231 1.22170 0.94730 0.99372 1.02753 1.19225 0.92900 0.85644 0.97992 1.20636 0.89944 1.00060 1.02270 0.90194 0.90564 0.90767 0.82568 0.81101 0.77297 0.91314 0.88915 0.90741 0.92286 0.78291 0.93480 0.91875 0.90674 0.90970 0.93995 0.91614 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.03 36.01 0.36 -0.23 16 2 C -0.05 -0.36 5.89 -104.54 -0.62 -0.98 16 3 C -0.16 -1.03 9.67 -39.95 -0.39 -1.42 16 4 C 0.11 0.93 11.17 -16.68 -0.19 0.74 16 5 N -0.27 -3.26 3.86 -10.54 -0.04 -3.30 16 6 N -0.32 -4.20 12.58 30.75 0.39 -3.81 16 7 C 0.11 1.34 9.67 -17.14 -0.17 1.17 16 8 C -0.30 -4.31 5.76 -104.68 -0.60 -4.91 16 9 C 0.60 9.26 7.45 -12.91 -0.10 9.16 16 10 O -0.55 -9.31 11.92 5.17 0.06 -9.25 16 11 N -0.60 -8.79 2.97 -166.79 -0.50 -9.29 16 12 C 0.08 1.14 5.56 -3.71 -0.02 1.12 16 13 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 14 C 0.18 3.47 2.73 -67.89 -0.19 3.29 16 15 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 16 N -0.72 -17.95 5.12 -53.38 -0.27 -18.22 16 17 C -0.24 -6.53 9.93 -15.06 -0.15 -6.67 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.13 -2.29 4.85 -26.61 -0.13 -2.42 16 26 C 0.15 2.24 3.49 -67.60 -0.24 2.01 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 C -0.13 -1.96 7.61 37.16 0.28 -1.67 16 29 C 0.16 2.15 6.75 -84.07 -0.57 1.58 16 30 C -0.11 -1.22 9.52 -39.53 -0.38 -1.59 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 34 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 35 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.21 2.05 5.89 -52.49 -0.31 1.74 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.13 3.19 -51.93 -0.17 0.96 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.07 1.10 6.68 -51.93 -0.35 0.76 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.06 6.80 -51.93 -0.35 0.70 16 48 H 0.16 1.78 7.64 -52.49 -0.40 1.38 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -33.99 381.26 -9.16 -43.16 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.93 Total: 9.21 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.32 Total: -4.04 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.30 Total: -62.08 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.99 -9.16 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044637310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.479 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds