Wall clock time and date at job start Wed Apr 1 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40162 * 120.29633 * 2 1 4 4 C 1.35188 * 120.31723 * 180.02562 * 3 2 1 5 5 N 1.36237 * 120.71017 * 359.97438 * 4 3 2 6 6 N 1.40019 * 132.01362 * 180.02562 * 5 4 3 7 7 C 1.30747 * 109.60221 * 179.70324 * 6 5 4 8 8 C 1.40552 * 108.74600 * 0.41080 * 7 6 5 9 9 C 1.46566 * 126.57775 * 179.85995 * 8 7 6 10 10 O 1.21726 * 119.99617 * 209.77705 * 9 8 7 11 11 N 1.34768 * 120.00468 * 29.77657 * 9 8 7 12 12 C 1.46931 * 120.62838 * 356.27033 * 11 9 8 13 13 C 1.53197 * 108.77300 * 126.37201 * 12 11 9 14 14 C 1.53039 * 109.31353 * 54.63664 * 13 12 11 15 15 H 1.08997 * 109.44917 * 58.64751 * 14 13 12 16 16 N 1.46503 * 109.45892 * 178.61508 * 14 13 12 17 17 C 1.36926 * 119.99822 * 275.06702 * 16 14 13 18 18 H 1.08008 * 120.00603 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00189 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99603 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00415 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47136 * 59.99485 * 21 19 17 23 23 H 1.48496 * 109.47257 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46738 * 299.99984 * 21 19 17 25 25 C 1.53045 * 109.53574 * 298.63353 * 14 13 12 26 26 C 1.46927 * 120.63434 * 176.25185 * 11 9 8 27 27 H 1.08993 * 109.58706 * 113.83823 * 26 11 9 28 28 C 1.52997 * 109.58222 * 353.55929 * 26 11 9 29 29 C 1.36580 * 120.08218 * 359.97438 * 5 4 3 30 30 C 1.36452 * 120.29700 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46570 * 90.00283 * 1 2 3 32 32 H 1.08996 * 109.46894 * 209.99981 * 1 2 3 33 33 H 1.08999 * 109.46835 * 330.00188 * 1 2 3 34 34 H 1.07998 * 119.84026 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.64663 * 179.97438 * 4 3 2 36 36 H 1.08001 * 125.62572 * 180.25225 * 7 6 5 37 37 H 1.08999 * 109.58942 * 246.15597 * 12 11 9 38 38 H 1.08998 * 109.58692 * 6.58884 * 12 11 9 39 39 H 1.08993 * 109.49574 * 174.58896 * 13 12 11 40 40 H 1.09001 * 109.49746 * 294.68381 * 13 12 11 41 41 H 0.96998 * 119.99606 * 95.07045 * 16 14 13 42 42 H 0.97001 * 119.99658 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.49808 * 301.41422 * 25 14 13 44 44 H 1.09002 * 109.52131 * 181.33253 * 25 14 13 45 45 H 1.08996 * 109.47259 * 66.93692 * 28 26 11 46 46 H 1.08998 * 109.46999 * 186.93710 * 28 26 11 47 47 H 1.09000 * 109.47601 * 306.93319 * 28 26 11 48 48 H 1.08001 * 120.37323 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5660 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0005 6 7 5.6353 -0.2343 -0.0005 7 6 5.8245 -1.5280 0.0058 8 6 4.5729 -2.1676 0.0008 9 6 4.3307 -3.6131 0.0023 10 8 3.3303 -4.0631 -0.5254 11 7 5.2155 -4.4441 0.5878 12 6 6.4667 -3.9248 1.1570 13 6 6.5766 -4.3900 2.6125 14 6 6.4454 -5.9137 2.6682 15 1 7.2271 -6.3678 2.0592 16 7 6.5832 -6.3650 4.0552 17 6 7.8273 -6.5826 4.5839 18 1 8.7072 -6.4220 3.9785 19 6 7.9579 -7.0108 5.8979 20 7 6.8857 -7.2070 6.6357 21 14 9.6552 -7.3070 6.6196 22 1 10.4396 -6.0469 6.5732 23 1 9.5225 -7.7553 8.0291 24 1 10.3529 -8.3536 5.8303 25 6 5.0742 -6.3294 2.1305 26 6 4.9472 -5.8863 0.6696 27 1 5.6702 -6.4276 0.0594 28 6 3.5321 -6.1741 0.1643 29 6 3.5961 -1.1528 0.0005 30 6 2.1954 -1.1782 0.0005 31 1 -0.3632 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6763 2.1468 -0.0004 35 1 4.0998 2.1495 -0.0009 36 1 6.7841 -2.0234 0.0112 37 1 7.3136 -4.3063 0.5866 38 1 6.4601 -2.8355 1.1210 39 1 7.5441 -4.0930 3.0172 40 1 5.7802 -3.9345 3.2011 41 1 5.7930 -6.5097 4.5988 42 1 6.9769 -7.5059 7.5540 43 1 4.2920 -5.8557 2.7236 44 1 4.9718 -7.4128 2.1923 45 1 3.4774 -5.9621 -0.9034 46 1 3.2899 -7.2223 0.3395 47 1 2.8207 -5.5430 0.6970 48 1 1.6663 -2.1197 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044637310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:32 Heat of formation + Delta-G solvation = 87.373401 kcal Electronic energy + Delta-G solvation = -30099.992074 eV Core-core repulsion = 26157.275708 eV Total energy + Delta-G solvation = -3942.716366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.28273 -41.28475 -38.72372 -38.55452 -36.13449 -34.95033 -33.77968 -33.57252 -32.42466 -31.06381 -30.24280 -28.57151 -27.93804 -26.03672 -25.16664 -24.76098 -23.61258 -22.99820 -22.28120 -21.44542 -20.21869 -19.12827 -18.64393 -17.87819 -17.35858 -16.95976 -16.89528 -16.70792 -16.06398 -16.02906 -15.79356 -15.48521 -15.39072 -15.04023 -14.74754 -14.51988 -14.34969 -14.32257 -13.90092 -13.53046 -13.35164 -13.23018 -13.04219 -12.92977 -12.82496 -12.68882 -12.65970 -12.58752 -12.30819 -12.21574 -12.00571 -11.94468 -11.86774 -11.64293 -11.42293 -11.32900 -10.85697 -10.32717 -10.10300 -9.54676 -8.99904 -8.68075 -7.91864 -5.20668 -0.38541 -0.03148 1.07934 1.13159 1.48358 1.51257 1.57068 1.92927 2.14862 2.48149 2.58091 3.14554 3.41058 3.43345 3.66331 3.73853 3.77094 3.83789 3.97303 4.04241 4.08566 4.11362 4.21374 4.28582 4.36669 4.42862 4.52564 4.59707 4.64994 4.73294 4.76502 4.78299 4.82010 4.87667 4.90412 5.02467 5.07486 5.10352 5.18572 5.24580 5.32103 5.34390 5.44038 5.45110 5.51369 5.55479 5.75578 5.76511 6.29426 6.34889 6.52929 7.30357 7.35314 8.11041 8.34615 9.31765 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.002676 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.042225 B =10460.338655 C =11036.299622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.101 3.899 5 N -0.276 5.276 6 N -0.342 5.342 7 C 0.111 3.889 8 C -0.345 4.345 9 C 0.597 3.403 10 O -0.572 6.572 11 N -0.599 5.599 12 C 0.093 3.907 13 C -0.138 4.138 14 C 0.174 3.826 15 H 0.052 0.948 16 N -0.738 5.738 17 C -0.235 4.235 18 H 0.080 0.920 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.299 1.299 24 H -0.277 1.277 25 C -0.122 4.122 26 C 0.153 3.847 27 H 0.087 0.913 28 C -0.121 4.121 29 C 0.151 3.849 30 C -0.150 4.150 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.204 0.796 35 H 0.204 0.796 36 H 0.231 0.769 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.369 0.631 42 H 0.249 0.751 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 19.406 -18.323 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.165 4.165 4 C -0.024 4.024 5 N -0.040 5.040 6 N -0.163 5.163 7 C -0.068 4.068 8 C -0.360 4.360 9 C 0.389 3.611 10 O -0.454 6.454 11 N -0.331 5.331 12 C -0.030 4.030 13 C -0.179 4.179 14 C 0.066 3.934 15 H 0.070 0.930 16 N -0.377 5.377 17 C -0.366 4.366 18 H 0.098 0.902 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.801 3.199 22 H -0.203 1.203 23 H -0.226 1.226 24 H -0.203 1.203 25 C -0.161 4.161 26 C 0.050 3.950 27 H 0.105 0.895 28 C -0.178 4.178 29 C 0.030 3.970 30 C -0.169 4.169 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.221 0.779 35 H 0.220 0.780 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.485 20.253 -18.586 29.421 hybrid contribution 0.394 -1.450 1.295 1.984 sum -10.091 18.803 -17.291 27.465 Atomic orbital electron populations 1.20973 0.87179 1.04840 1.04348 1.20516 0.98989 0.91614 0.91693 1.21410 0.91271 1.00711 1.03150 1.22403 0.93035 0.88410 0.98593 1.46299 1.06100 1.05956 1.45604 1.77513 0.88965 1.17245 1.32560 1.24757 0.99420 0.90150 0.92475 1.19755 0.92652 0.93256 1.30300 1.17104 0.82048 0.84698 0.77283 1.90779 1.29825 1.77145 1.47645 1.47973 1.20721 1.07362 1.57044 1.22531 0.85831 1.01211 0.93400 1.22429 1.01272 0.98417 0.95772 1.20408 0.95315 0.92421 0.85239 0.92957 1.42659 1.04986 1.80164 1.09875 1.19611 0.86448 1.35560 0.95015 0.90214 1.25567 1.00477 1.03502 0.97578 1.69828 1.29130 1.54902 1.08557 0.85231 0.79755 0.78131 0.76784 1.20344 1.22595 1.20289 1.22141 0.97297 1.01166 0.95513 1.21243 0.98760 0.79729 0.95233 0.89497 1.22010 0.94085 0.99678 1.02034 1.19475 0.93680 0.86118 0.97738 1.20659 0.89489 1.00946 1.05840 0.88733 0.91110 0.88080 0.77870 0.77952 0.75329 0.88698 0.87222 0.91484 0.94478 0.79950 0.94211 0.93562 0.90934 0.91404 0.92710 0.93543 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.03 71.24 0.71 -0.14 16 2 C -0.02 -0.31 5.89 -19.81 -0.12 -0.42 16 3 C -0.14 -1.32 9.67 22.03 0.21 -1.10 16 4 C 0.10 1.37 11.17 83.31 0.93 2.30 16 5 N -0.28 -6.36 3.86 -187.27 -0.72 -7.08 16 6 N -0.34 -8.70 12.58 -56.62 -0.71 -9.41 16 7 C 0.11 2.73 9.67 85.42 0.83 3.56 16 8 C -0.35 -9.94 5.76 -19.90 -0.11 -10.06 16 9 C 0.60 18.92 7.45 86.42 0.64 19.57 16 10 O -0.57 -20.20 11.92 -4.43 -0.05 -20.25 16 11 N -0.60 -17.63 2.97 -799.80 -2.38 -20.00 16 12 C 0.09 2.43 5.56 86.36 0.48 2.91 16 13 C -0.14 -4.77 5.66 30.67 0.17 -4.60 16 14 C 0.17 6.80 2.73 45.02 0.12 6.92 16 15 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 16 N -0.74 -37.35 5.12 -322.80 -1.65 -39.00 16 17 C -0.23 -12.88 9.93 84.04 0.83 -12.05 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 20 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 21 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C -0.12 -4.24 4.85 30.67 0.15 -4.09 16 26 C 0.15 4.57 3.49 44.97 0.16 4.72 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 C -0.12 -3.60 7.61 71.98 0.55 -3.05 16 29 C 0.15 4.02 6.75 39.49 0.27 4.29 16 30 C -0.15 -3.35 9.52 22.30 0.21 -3.14 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 33 H 0.10 0.25 8.10 -2.39 -0.02 0.24 16 34 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 35 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.23 4.20 5.89 -2.91 -0.02 4.19 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.11 2.57 3.19 -2.39 -0.01 2.57 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.37 20.51 7.80 -92.71 -0.72 19.78 16 42 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.07 2.09 6.68 -2.39 -0.02 2.08 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.55 6.80 -2.39 -0.02 1.54 16 48 H 0.14 3.46 7.64 -2.91 -0.02 3.44 16 Total: -1.00 -76.90 381.26 3.56 -73.33 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.26 Total: 32.77 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.51 Total: 1.51 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -5.18 Total: -135.54 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -76.90 3.56 -73.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044637310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.707 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds