Wall clock time and date at job start Wed Apr 1 2020 02:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39899 * 125.87628 * 2 1 4 4 C 1.35350 * 107.92801 * 179.77438 * 3 2 1 5 5 C 1.50695 * 126.13912 * 180.26201 * 4 3 2 6 6 N 1.35189 * 107.71597 * 0.37099 * 4 3 2 7 7 C 1.40248 * 126.04994 * 179.89551 * 6 4 3 8 8 C 1.38703 * 120.10141 * 311.65703 * 7 6 4 9 9 C 1.38170 * 120.00715 * 180.02562 * 8 7 6 10 10 C 1.38322 * 120.19867 * 359.97438 * 9 8 7 11 11 C 1.38167 * 120.19605 * 359.75020 * 10 9 8 12 12 C 1.38745 * 119.99413 * 0.52540 * 11 10 9 13 13 N 1.39981 * 120.10103 * 179.75269 * 12 11 10 14 14 C 1.34779 * 119.99999 * 340.02193 * 13 12 11 15 15 O 1.21292 * 119.99595 * 354.70413 * 14 13 12 16 16 C 1.50700 * 120.00354 * 174.70354 * 14 13 12 17 17 H 1.09001 * 109.46891 * 320.00651 * 16 14 13 18 18 N 1.46896 * 109.47338 * 199.99943 * 16 14 13 19 19 C 1.52998 * 109.46970 * 80.00260 * 16 14 13 20 20 C 1.52998 * 109.47246 * 185.00411 * 19 16 14 21 21 C 1.50705 * 109.47315 * 180.02562 * 20 19 16 22 22 H 1.07993 * 119.99600 * 359.97438 * 21 20 19 23 23 C 1.37869 * 119.99985 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00346 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00178 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47321 * 89.99782 * 25 23 21 27 27 H 1.48503 * 109.47256 * 210.00212 * 25 23 21 28 28 H 1.48504 * 109.46940 * 330.00072 * 25 23 21 29 29 N 1.30897 * 125.88425 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46712 * 269.96704 * 1 2 3 31 31 H 1.08997 * 109.47139 * 29.97207 * 1 2 3 32 32 H 1.09010 * 109.46655 * 149.97250 * 1 2 3 33 33 H 1.07999 * 126.03620 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47631 * 264.94676 * 5 4 3 35 35 H 1.09001 * 109.47399 * 24.94647 * 5 4 3 36 36 H 1.09002 * 109.47269 * 144.94386 * 5 4 3 37 37 H 1.08002 * 119.99583 * 359.97438 * 8 7 6 38 38 H 1.08008 * 119.90231 * 179.97438 * 9 8 7 39 39 H 1.08008 * 119.90183 * 180.02562 * 10 9 8 40 40 H 1.08005 * 120.00051 * 180.25652 * 11 10 9 41 41 H 0.96997 * 120.00089 * 160.30469 * 13 12 11 42 42 H 1.00898 * 111.00327 * 176.04091 * 18 16 14 43 43 H 1.00900 * 111.00479 * 300.00659 * 18 16 14 44 44 H 1.09008 * 109.47338 * 305.00188 * 19 16 14 45 45 H 1.08997 * 109.47399 * 64.99953 * 19 16 14 46 46 H 1.09008 * 109.46620 * 299.99591 * 20 19 16 47 47 H 1.08997 * 109.47296 * 59.99479 * 20 19 16 48 48 H 0.96997 * 120.00344 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3269 1.1336 0.0000 4 6 3.6145 0.7165 0.0051 5 6 4.8350 1.6004 0.0125 6 7 3.6091 -0.6354 -0.0002 7 6 4.7396 -1.4653 0.0004 8 6 5.7754 -1.2305 -0.8917 9 6 6.8881 -2.0497 -0.8898 10 6 6.9737 -3.1049 0.0005 11 6 5.9493 -3.3429 0.8966 12 6 4.8258 -2.5289 0.8979 13 7 3.7843 -2.7711 1.8013 14 6 3.6621 -3.9823 2.3798 15 8 4.3942 -4.8901 2.0466 16 6 2.6158 -4.2087 3.4405 17 1 2.5636 -3.3360 4.0914 18 7 2.9719 -5.3918 4.2350 19 6 1.2557 -4.4312 2.7759 20 6 0.1734 -4.5367 3.8522 21 6 -1.1662 -4.7565 3.1976 22 1 -1.2383 -4.8147 2.1217 23 6 -2.2995 -4.8834 3.9725 24 7 -3.4686 -5.0747 3.4013 25 14 -2.1745 -4.7835 5.8336 26 1 -2.3381 -3.3722 6.2657 27 1 -3.2407 -5.6157 6.4468 28 1 -0.8452 -5.2832 6.2680 29 7 2.2743 -1.0605 -0.0005 30 1 -0.3632 -0.0006 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5143 33 1 1.9916 2.1602 -0.0004 34 1 5.1871 1.7423 -1.0092 35 1 4.5808 2.5673 0.4467 36 1 5.6200 1.1310 0.6054 37 1 5.7118 -0.4078 -1.5886 38 1 7.6934 -1.8656 -1.5856 39 1 7.8459 -3.7420 -0.0019 40 1 6.0213 -4.1651 1.5932 41 1 3.1483 -2.0686 2.0080 42 1 2.3205 -5.5275 4.9935 43 1 3.0267 -6.2147 3.6537 44 1 1.0319 -3.5925 2.1166 45 1 1.2816 -5.3531 2.1950 46 1 0.3972 -5.3755 4.5115 47 1 0.1475 -3.6148 4.4331 48 1 -4.2658 -5.1643 3.9465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424088621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:00 Heat of formation + Delta-G solvation = 66.872815 kcal Electronic energy + Delta-G solvation = -29993.704017 eV Core-core repulsion = 26050.098679 eV Total energy + Delta-G solvation = -3943.605338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83895 -40.50856 -38.72856 -35.81937 -34.91262 -34.22226 -32.83103 -32.27325 -30.63272 -30.35499 -29.92962 -27.57400 -27.21712 -26.70606 -24.25264 -23.29160 -22.29208 -20.60067 -20.39573 -19.98672 -19.73438 -18.04660 -17.48857 -17.30395 -16.70353 -15.75905 -15.38174 -15.19954 -14.92635 -14.66883 -14.38645 -14.23850 -14.10880 -13.90457 -13.82752 -13.52256 -13.39791 -13.28724 -13.15236 -12.79125 -12.69362 -12.55785 -12.51292 -12.11207 -11.95451 -11.91528 -11.71145 -11.40637 -10.99875 -10.73755 -10.62037 -10.29920 -10.08887 -9.89837 -9.76341 -9.46995 -9.31501 -8.99777 -8.62437 -8.60735 -8.40634 -8.03810 -6.11199 -4.10663 0.74166 1.09000 1.81248 2.27395 2.62668 2.64884 2.94448 3.24348 3.32792 3.33669 3.54972 4.34153 4.37378 4.42488 4.61454 4.70284 4.75449 4.84454 4.93896 5.05102 5.14276 5.20547 5.21221 5.22347 5.29050 5.35311 5.47749 5.51392 5.52566 5.65978 5.69190 5.71642 5.91294 5.97611 5.99145 6.12197 6.15461 6.23073 6.29947 6.33511 6.59146 6.63256 6.69045 7.08075 7.09198 7.17892 7.21507 7.40061 7.62961 7.64091 7.71773 8.11154 8.45350 8.93335 9.49789 11.01991 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003510 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.000291 B = 7974.741194 C = 9939.367281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.086 3.914 3 C -0.266 4.266 4 C 0.086 3.914 5 C -0.093 4.093 6 N -0.327 5.327 7 C 0.105 3.895 8 C -0.099 4.099 9 C -0.133 4.133 10 C -0.092 4.092 11 C -0.132 4.132 12 C 0.177 3.823 13 N -0.661 5.661 14 C 0.530 3.470 15 O -0.512 6.512 16 C 0.074 3.926 17 H 0.099 0.901 18 N -0.829 5.829 19 C -0.130 4.130 20 C -0.009 4.009 21 C -0.522 4.522 22 H 0.072 0.928 23 C 0.068 3.932 24 N -0.900 5.900 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.266 1.266 29 N -0.287 5.287 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.165 0.835 41 H 0.415 0.585 42 H 0.354 0.646 43 H 0.349 0.651 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.016 0.984 47 H 0.013 0.987 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.792 14.195 -6.835 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.294 4.294 4 C -0.038 4.038 5 C -0.151 4.151 6 N -0.104 5.104 7 C 0.011 3.989 8 C -0.119 4.119 9 C -0.152 4.152 10 C -0.111 4.111 11 C -0.152 4.152 12 C 0.079 3.921 13 N -0.304 5.304 14 C 0.318 3.682 15 O -0.387 6.387 16 C -0.041 4.041 17 H 0.117 0.883 18 N -0.362 5.362 19 C -0.170 4.170 20 C -0.046 4.046 21 C -0.560 4.560 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.538 5.538 25 Si 0.707 3.293 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.190 1.190 29 N -0.107 5.107 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.182 0.818 41 H 0.252 0.748 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.833 12.538 -6.768 25.239 hybrid contribution -1.541 1.000 0.582 1.927 sum 19.292 13.538 -6.186 24.366 Atomic orbital electron populations 1.20269 0.85969 1.03539 1.03849 1.22577 0.97333 0.90514 0.97700 1.21182 0.90687 0.99946 1.17605 1.21211 0.97496 0.83915 1.01205 1.20505 0.93235 0.98151 1.03206 1.45639 1.04066 1.03283 1.57433 1.17066 0.87129 0.95857 0.98837 1.20827 0.93433 1.00855 0.96810 1.20940 0.97964 0.95768 1.00562 1.21209 0.98391 0.96794 0.94713 1.21724 0.90994 1.01078 1.01433 1.17801 0.89000 0.95399 0.89944 1.43616 1.29020 1.15357 1.42360 1.21054 0.84362 0.80820 0.81919 1.90545 1.44034 1.42049 1.62065 1.21494 0.92356 0.96762 0.93454 0.88333 1.58738 1.56557 1.06105 1.14792 1.22224 0.92225 1.02479 1.00077 1.19566 0.94540 0.96248 0.94269 1.21041 0.89695 1.49919 0.95332 0.90995 1.25026 0.95262 0.94466 0.98600 1.69908 0.98560 1.49613 1.35756 0.86782 0.78093 0.78336 0.86053 1.20265 1.21319 1.19039 1.77691 0.85130 1.22137 1.25743 0.89724 0.90429 0.90389 0.83204 0.90254 0.89535 0.90799 0.85246 0.85152 0.85077 0.81815 0.74803 0.83122 0.83715 0.91568 0.91866 0.96599 0.96838 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.45 36.01 0.38 -0.53 16 2 C 0.09 1.16 7.22 -82.37 -0.59 0.56 16 3 C -0.27 -3.00 10.65 -39.99 -0.43 -3.43 16 4 C 0.09 0.96 6.77 -82.15 -0.56 0.40 16 5 C -0.09 -0.65 8.99 36.00 0.32 -0.32 16 6 N -0.33 -4.43 3.27 -6.86 -0.02 -4.45 16 7 C 0.10 1.37 5.98 -83.39 -0.50 0.87 16 8 C -0.10 -1.01 8.78 -39.43 -0.35 -1.36 16 9 C -0.13 -1.19 10.04 -39.58 -0.40 -1.58 16 10 C -0.09 -0.94 10.04 -39.58 -0.40 -1.34 16 11 C -0.13 -1.76 8.78 -39.42 -0.35 -2.11 16 12 C 0.18 2.56 6.50 -83.51 -0.54 2.02 16 13 N -0.66 -10.12 5.04 -9.74 -0.05 -10.17 16 14 C 0.53 8.87 6.93 -10.98 -0.08 8.79 16 15 O -0.51 -9.39 13.16 5.55 0.07 -9.31 16 16 C 0.07 1.23 3.21 -68.87 -0.22 1.01 16 17 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 18 N -0.83 -13.24 8.94 -5.66 -0.05 -13.29 16 19 C -0.13 -2.55 4.78 -26.73 -0.13 -2.67 16 20 C -0.01 -0.20 3.81 -27.88 -0.11 -0.31 16 21 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 22 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 23 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 24 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 25 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 29 N -0.29 -4.51 11.11 33.69 0.37 -4.13 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.52 7.76 -51.93 -0.40 0.12 16 37 H 0.13 1.07 7.30 -52.49 -0.38 0.69 16 38 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.16 2.43 5.43 -52.48 -0.29 2.15 16 41 H 0.41 6.27 7.27 -40.82 -0.30 5.97 16 42 H 0.35 5.49 7.55 -39.29 -0.30 5.19 16 43 H 0.35 5.64 8.58 -39.29 -0.34 5.30 16 44 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.02 0.35 5.92 -51.92 -0.31 0.04 16 47 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -33.47 394.47 -8.92 -42.39 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -6.92 Total: 16.20 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -4.37 Total: -13.02 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 1.03 Total: -58.64 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.47 -8.92 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.259 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds