Wall clock time and date at job start Wed Apr 1 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39757 * 125.83938 * 2 1 4 4 C 1.36108 * 107.82713 * 179.72647 * 3 2 1 5 5 N 1.39468 * 126.21671 * 180.26421 * 4 3 2 6 6 C 1.34782 * 120.00189 * 0.14351 * 5 4 3 7 7 O 1.21289 * 119.99768 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00012 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47270 * 319.99836 * 8 6 5 10 10 N 1.46901 * 109.46769 * 200.00173 * 8 6 5 11 11 C 1.52996 * 109.47024 * 80.00363 * 8 6 5 12 12 C 1.53002 * 109.47026 * 184.99647 * 11 8 6 13 13 C 1.50700 * 109.47015 * 179.97438 * 12 11 8 14 14 H 1.08004 * 120.00320 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00030 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00120 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46852 * 60.00100 * 17 15 13 19 19 H 1.48498 * 109.47119 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47281 * 300.00276 * 17 15 13 21 21 N 1.35260 * 107.56910 * 0.38814 * 4 3 2 22 22 C 1.46500 * 126.05234 * 179.87741 * 21 4 3 23 23 C 1.50703 * 109.46887 * 269.71817 * 22 21 4 24 24 C 1.38234 * 120.00257 * 89.99927 * 23 22 21 25 25 C 1.38238 * 119.99675 * 180.27927 * 24 23 22 26 26 C 1.38228 * 120.00120 * 359.47825 * 25 24 23 27 27 C 1.38234 * 120.00000 * 0.52176 * 26 25 24 28 28 C 1.38234 * 119.99503 * 270.01528 * 23 22 21 29 29 N 1.30848 * 125.83469 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.46917 * 270.01450 * 1 2 3 31 31 H 1.09006 * 109.47020 * 30.01514 * 1 2 3 32 32 H 1.08995 * 109.47319 * 150.01134 * 1 2 3 33 33 H 1.08000 * 126.08754 * 0.02562 * 3 2 1 34 34 H 0.97000 * 120.00135 * 180.14383 * 5 4 3 35 35 H 1.00900 * 110.99783 * 176.04440 * 10 8 6 36 36 H 1.00893 * 111.00510 * 300.00120 * 10 8 6 37 37 H 1.08999 * 109.47250 * 305.00045 * 11 8 6 38 38 H 1.08998 * 109.47312 * 64.99816 * 11 8 6 39 39 H 1.09004 * 109.47128 * 299.99941 * 12 11 8 40 40 H 1.08998 * 109.46938 * 59.99939 * 12 11 8 41 41 H 0.97004 * 119.99676 * 180.02562 * 16 15 13 42 42 H 1.08988 * 109.47441 * 149.71199 * 22 21 4 43 43 H 1.09000 * 109.46440 * 29.71122 * 22 21 4 44 44 H 1.08002 * 119.99744 * 359.97438 * 24 23 22 45 45 H 1.08004 * 119.99577 * 179.72816 * 25 24 23 46 46 H 1.07999 * 119.99932 * 180.24104 * 26 25 24 47 47 H 1.08001 * 120.00310 * 179.72161 * 27 26 25 48 48 H 1.07997 * 120.00460 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0135 6 6 4.6157 2.8683 0.0178 7 8 3.5097 3.3661 0.0158 8 6 5.8384 3.7492 0.0263 9 1 6.5906 3.3204 0.6885 10 7 5.4729 5.0896 0.5034 11 6 6.4046 3.8493 -1.3915 12 6 7.7143 4.6399 -1.3630 13 6 8.2723 4.7380 -2.7595 14 1 7.7454 4.2825 -3.5849 15 6 9.4550 5.4103 -2.9836 16 7 10.0964 5.9655 -1.9786 17 14 10.1471 5.5313 -4.7144 18 1 9.1690 6.2240 -5.5913 19 1 11.4181 6.2987 -4.6868 20 1 10.4046 4.1669 -5.2411 21 7 3.6093 -0.6405 0.0012 22 6 4.7870 -1.5118 0.0025 23 6 5.1921 -1.8109 -1.4179 24 6 6.0898 -0.9857 -2.0690 25 6 6.4569 -1.2570 -3.3739 26 6 5.9345 -2.3594 -4.0239 27 6 5.0368 -3.1845 -3.3728 28 6 4.6656 -2.9104 -2.0697 29 7 2.2731 -1.0608 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8900 -0.5136 33 1 1.9903 2.1597 0.0004 34 1 5.6358 1.1293 0.0154 35 1 6.2870 5.6808 0.5796 36 1 4.7764 5.5087 -0.0942 37 1 6.5929 2.8482 -1.7791 38 1 5.6867 4.3587 -2.0344 39 1 7.5259 5.6412 -0.9754 40 1 8.4322 4.1306 -0.7202 41 1 10.9284 6.4388 -2.1363 42 1 4.5494 -2.4430 0.5164 43 1 5.6079 -1.0121 0.5168 44 1 6.5006 -0.1264 -1.5599 45 1 7.1550 -0.6097 -3.8841 46 1 6.2243 -2.5734 -5.0421 47 1 4.6251 -4.0434 -3.8821 48 1 3.9637 -3.5547 -1.5613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424089727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:56 Heat of formation + Delta-G solvation = 59.083449 kcal Electronic energy + Delta-G solvation = -29537.802732 eV Core-core repulsion = 25593.859621 eV Total energy + Delta-G solvation = -3943.943110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.60393 -39.69650 -39.31472 -35.77317 -35.21087 -34.23452 -32.95113 -31.60577 -31.11532 -30.01783 -29.28079 -28.66224 -26.62303 -25.54194 -24.21021 -22.87813 -21.94897 -21.53147 -20.53846 -20.21433 -19.49889 -17.91434 -17.20250 -16.97684 -16.32736 -15.95158 -15.64750 -15.34067 -15.11551 -14.80080 -14.54229 -14.38191 -14.31873 -13.77036 -13.63165 -13.51773 -13.35293 -13.22039 -13.12764 -12.76654 -12.62517 -12.35134 -12.33111 -12.22162 -11.87459 -11.45550 -11.23497 -11.19742 -10.99775 -10.82565 -10.76791 -10.53123 -10.10505 -9.98857 -9.44011 -9.33261 -9.14691 -9.11508 -8.80521 -8.51399 -8.36181 -8.04005 -6.15766 -4.19371 0.94377 1.19831 1.73950 2.17802 2.63806 3.00418 3.06963 3.23232 3.28826 3.30853 3.63168 4.22996 4.32789 4.36903 4.58150 4.69465 4.78587 4.88756 4.92378 4.99873 5.05970 5.15347 5.20469 5.27314 5.36910 5.39943 5.54403 5.55499 5.58614 5.71051 5.76663 5.79535 5.82127 5.96014 6.10611 6.19655 6.22803 6.28708 6.31895 6.37614 6.73297 6.75033 6.80438 6.98356 7.18951 7.38612 7.42522 7.51410 7.76104 7.80595 7.80760 8.10934 8.22351 8.86113 9.46042 10.94981 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.003391 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.016694 B = 8254.489735 C =10654.030539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.083 3.917 3 C -0.282 4.282 4 C 0.319 3.681 5 N -0.653 5.653 6 C 0.532 3.468 7 O -0.499 6.499 8 C 0.082 3.918 9 H 0.101 0.899 10 N -0.829 5.829 11 C -0.139 4.139 12 C 0.026 3.974 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 N -0.384 5.384 22 C 0.174 3.826 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.116 4.116 26 C -0.110 4.110 27 C -0.124 4.124 28 C -0.091 4.091 29 N -0.294 5.294 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.408 0.592 35 H 0.358 0.642 36 H 0.348 0.652 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -16.921 3.161 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.313 4.313 4 C 0.100 3.900 5 N -0.301 5.301 6 C 0.319 3.681 7 O -0.370 6.370 8 C -0.034 4.034 9 H 0.119 0.881 10 N -0.362 5.362 11 C -0.178 4.178 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.072 0.928 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 N -0.171 5.171 22 C 0.053 3.947 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.110 4.110 29 N -0.117 5.117 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.189 0.811 34 H 0.244 0.756 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.705 -18.058 3.904 21.871 hybrid contribution 1.602 0.997 -2.000 2.750 sum -10.104 -17.061 1.904 19.920 Atomic orbital electron populations 1.20146 0.86722 1.03129 1.02796 1.22201 0.96863 0.90726 0.98547 1.21529 0.88905 1.01134 1.19764 1.18079 0.89092 0.82172 1.00656 1.43136 1.06973 1.06351 1.73678 1.21136 0.92222 0.80484 0.74253 1.90593 1.27115 1.73267 1.45981 1.21444 0.92065 0.91047 0.98826 0.88110 1.58725 1.17421 1.03085 1.56968 1.22431 1.00799 1.01955 0.92655 1.19098 0.89640 0.94764 0.97655 1.21110 1.06944 1.34950 0.93430 0.92752 1.24999 0.96863 0.95302 0.97016 1.69933 1.16911 1.35554 1.30674 0.86649 0.78382 0.78234 0.84722 1.20173 1.21175 1.20213 1.48542 1.05590 1.01864 1.61153 1.20466 0.84441 0.95664 0.94108 1.19998 0.98961 0.96934 0.96182 1.21072 0.96997 0.98396 0.95267 1.21248 1.00022 0.97449 0.94692 1.21258 0.96789 0.94844 0.99949 1.21162 0.98239 0.99964 0.94884 1.21026 0.98387 0.96693 0.94857 1.77335 0.84869 1.21591 1.27934 0.90624 0.90383 0.91165 0.81113 0.75615 0.82553 0.83870 0.92590 0.92305 0.96262 0.96260 0.92747 0.87533 0.88726 0.86208 0.85286 0.85870 0.85925 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.44 36.01 0.38 -0.31 16 2 C 0.08 1.15 7.21 -82.44 -0.59 0.56 16 3 C -0.28 -4.37 9.58 -39.78 -0.38 -4.76 16 4 C 0.32 4.64 7.66 -153.16 -1.17 3.46 16 5 N -0.65 -8.65 5.41 -11.46 -0.06 -8.71 16 6 C 0.53 8.29 7.04 -10.98 -0.08 8.21 16 7 O -0.50 -9.00 13.38 5.55 0.07 -8.93 16 8 C 0.08 1.26 3.21 -68.87 -0.22 1.04 16 9 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 10 N -0.83 -13.07 8.93 -5.65 -0.05 -13.13 16 11 C -0.14 -2.51 4.78 -26.73 -0.13 -2.64 16 12 C 0.03 0.58 4.74 -27.88 -0.13 0.45 16 13 C -0.53 -13.82 9.11 -34.44 -0.31 -14.13 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 N -0.38 -5.03 3.60 -61.58 -0.22 -5.25 16 22 C 0.17 1.71 6.38 -5.19 -0.03 1.67 16 23 C -0.12 -1.27 5.46 -104.62 -0.57 -1.84 16 24 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.11 -1.11 10.05 -39.59 -0.40 -1.50 16 27 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.09 -0.93 9.70 -39.58 -0.38 -1.32 16 29 N -0.29 -4.19 12.56 33.65 0.42 -3.77 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.17 2.86 5.83 -52.49 -0.31 2.55 16 34 H 0.41 4.32 7.17 -40.82 -0.29 4.02 16 35 H 0.36 5.67 7.55 -39.29 -0.30 5.37 16 36 H 0.35 5.55 8.58 -39.30 -0.34 5.21 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.11 0.89 8.08 -51.94 -0.42 0.47 16 43 H 0.09 0.73 7.43 -51.93 -0.39 0.34 16 44 H 0.12 1.22 7.28 -52.49 -0.38 0.84 16 45 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -32.22 402.73 -10.33 -42.55 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -6.97 Total: 14.28 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -5.31 Total: -14.34 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.82 Total: -55.29 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.22 -10.33 -42.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.630 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds