Wall clock time and date at job start Wed Apr 1 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.51907 * 2 1 4 4 C 1.52757 * 109.56342 * 240.04717 * 2 1 3 5 5 N 1.46930 * 109.00623 * 185.54745 * 4 2 1 6 6 C 1.36936 * 120.63424 * 233.58634 * 5 4 2 7 7 H 1.07995 * 120.00289 * 152.22236 * 6 5 4 8 8 C 1.38817 * 119.99502 * 332.22135 * 6 5 4 9 9 N 1.31612 * 120.00107 * 335.02596 * 8 6 5 10 10 Si 1.86801 * 119.99419 * 155.02751 * 8 6 5 11 11 H 1.48497 * 109.47275 * 90.00269 * 10 8 6 12 12 H 1.48502 * 109.46928 * 209.99622 * 10 8 6 13 13 H 1.48494 * 109.47235 * 329.99781 * 10 8 6 14 14 C 1.46933 * 118.73578 * 53.30912 * 5 4 2 15 15 C 1.53189 * 108.77712 * 306.64412 * 14 5 4 16 16 C 1.53036 * 109.49708 * 120.07916 * 2 1 3 17 17 H 1.08999 * 109.46378 * 61.30090 * 16 2 1 18 18 N 1.46504 * 109.46085 * 301.33928 * 16 2 1 19 19 C 1.34778 * 120.00018 * 154.93707 * 18 16 2 20 20 O 1.21770 * 119.99790 * 359.97438 * 19 18 16 21 21 C 1.46290 * 119.99961 * 179.97438 * 19 18 16 22 22 N 1.32509 * 125.56529 * 0.02562 * 21 19 18 23 23 C 1.32028 * 109.86555 * 179.97438 * 22 21 19 24 24 C 1.39367 * 107.93293 * 0.02562 * 23 22 21 25 25 C 1.40413 * 133.41290 * 180.02562 * 24 23 22 26 26 C 1.36329 * 119.19053 * 179.97438 * 25 24 23 27 27 C 1.40330 * 119.58282 * 0.02562 * 26 25 24 28 28 C 1.35165 * 120.40059 * 359.97438 * 27 26 25 29 29 N 1.36191 * 120.59412 * 359.74616 * 28 27 26 30 30 H 1.08999 * 109.47539 * 299.92059 * 1 2 3 31 31 H 1.08997 * 109.47556 * 59.92102 * 1 2 3 32 32 H 1.09007 * 109.46919 * 179.91827 * 1 2 3 33 33 H 1.09002 * 109.47061 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47136 * 300.07783 * 3 2 1 35 35 H 1.08998 * 109.47171 * 60.07895 * 3 2 1 36 36 H 1.09001 * 109.51128 * 65.67141 * 4 2 1 37 37 H 1.08991 * 109.43509 * 305.38198 * 4 2 1 38 38 H 0.96997 * 120.00247 * 354.26122 * 9 8 6 39 39 H 1.09000 * 109.58250 * 66.43147 * 14 5 4 40 40 H 1.09003 * 109.58408 * 186.71129 * 14 5 4 41 41 H 1.08994 * 109.50011 * 174.58839 * 15 14 5 42 42 H 1.09001 * 109.49816 * 294.64986 * 15 14 5 43 43 H 0.96999 * 120.00036 * 334.93263 * 18 16 2 44 44 H 1.07996 * 126.02837 * 180.02562 * 23 22 21 45 45 H 1.07997 * 120.40583 * 359.96035 * 25 24 23 46 46 H 1.07993 * 120.20897 * 179.97438 * 26 25 24 47 47 H 1.08006 * 119.80122 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.70156 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0415 -0.7187 -1.2471 5 7 3.5046 -0.8290 -1.1696 6 6 4.2936 -0.3783 -2.1940 7 1 5.2997 -0.0412 -1.9928 8 6 3.8002 -0.3546 -3.4913 9 7 2.8307 -1.1729 -3.8416 10 14 4.5123 0.8386 -4.7397 11 1 5.6476 0.1948 -5.4482 12 1 3.4632 1.2115 -5.7224 13 1 4.9921 2.0580 -4.0412 14 6 4.1054 -1.4265 0.0308 15 6 3.5709 -0.6949 1.2660 16 6 2.0408 -0.7230 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5264 -0.0529 2.4453 19 6 1.3972 -0.7385 3.5984 20 8 1.7075 -1.9151 3.6453 21 6 0.8841 -0.0692 4.7938 22 7 0.5145 1.2012 4.8670 23 6 0.1011 1.4784 6.0899 24 6 0.2106 0.3176 6.8533 25 6 -0.0756 0.0137 8.1940 26 6 0.1467 -1.2513 8.6511 27 6 0.6561 -2.2241 7.7774 28 6 0.9257 -1.9133 6.4899 29 7 0.7029 -0.6548 6.0194 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1312 1.4412 -0.0005 34 1 1.6772 1.9566 -0.8893 35 1 1.6795 1.9558 0.8907 36 1 1.7646 -0.1496 -2.1346 37 1 1.6022 -1.7148 -1.2975 38 1 2.5178 -1.8485 -3.2199 39 1 3.8376 -2.4816 0.0868 40 1 5.1898 -1.3266 -0.0149 41 1 3.9335 -1.1894 2.1671 42 1 3.9164 0.3389 1.2544 43 1 1.2790 0.8843 2.4079 44 1 -0.2584 2.4357 6.4372 45 1 -0.4667 0.7729 8.8550 46 1 -0.0673 -1.5029 9.6793 47 1 0.8339 -3.2273 8.1360 48 1 1.3180 -2.6707 5.8274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940888317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:03 Heat of formation + Delta-G solvation = 70.283877 kcal Electronic energy + Delta-G solvation = -30472.489297 eV Core-core repulsion = 26529.031874 eV Total energy + Delta-G solvation = -3943.457423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.15723 -39.99554 -38.21080 -37.74410 -34.84914 -33.71590 -32.95277 -32.15895 -31.27439 -29.53954 -28.43417 -26.80609 -26.10644 -25.26637 -24.23114 -23.61208 -22.52669 -22.04544 -20.75290 -20.37628 -18.87729 -17.69347 -17.29520 -17.21588 -16.63128 -16.42648 -15.87370 -15.74848 -14.96851 -14.66813 -14.61281 -14.41991 -14.03045 -13.71476 -13.62751 -13.55863 -13.29651 -12.73142 -12.66693 -12.46324 -12.29172 -12.16385 -11.87098 -11.49273 -11.46928 -11.14971 -10.94792 -10.90591 -10.71908 -10.66826 -10.42016 -10.32852 -10.11771 -10.03810 -10.00446 -9.76702 -9.71387 -9.24449 -8.80050 -8.34065 -7.83706 -6.85895 -6.04767 -3.20056 0.39937 0.55260 2.03581 2.13087 3.01390 3.33225 3.36429 3.51445 3.55270 3.70389 4.09239 4.14616 4.38317 4.48915 4.52098 4.60979 4.64770 5.03408 5.12130 5.17224 5.26518 5.38247 5.42750 5.44825 5.56132 5.58917 5.75654 5.78274 5.88680 5.98415 6.07302 6.10843 6.12954 6.18971 6.23923 6.33142 6.39210 6.40912 6.59741 6.60649 6.66157 6.74121 6.82055 6.83475 6.92121 7.11595 7.16888 7.31661 7.68697 8.03240 8.20807 8.59842 9.13546 9.86904 10.31493 11.24125 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.002533 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.502611 B =11050.207418 C =11420.484283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.166 3.834 5 N -0.596 5.596 6 C -0.346 4.346 7 H 0.056 0.944 8 C -0.023 4.023 9 N -0.916 5.916 10 Si 1.063 2.937 11 H -0.295 1.295 12 H -0.286 1.286 13 H -0.292 1.292 14 C 0.150 3.850 15 C -0.143 4.143 16 C 0.165 3.835 17 H 0.083 0.917 18 N -0.692 5.692 19 C 0.605 3.395 20 O -0.551 6.551 21 C 0.090 3.910 22 N -0.404 5.404 23 C -0.013 4.013 24 C 0.018 3.982 25 C -0.082 4.082 26 C -0.112 4.112 27 C -0.137 4.137 28 C 0.066 3.934 29 N -0.321 5.321 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.269 0.731 39 H 0.018 0.982 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.408 0.592 44 H 0.189 0.811 45 H 0.151 0.849 46 H 0.141 0.859 47 H 0.153 0.847 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 2.632 24.991 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 C -0.187 4.187 4 C 0.039 3.961 5 N -0.319 5.319 6 C -0.475 4.475 7 H 0.073 0.927 8 C -0.225 4.225 9 N -0.557 5.557 10 Si 0.893 3.107 11 H -0.222 1.222 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.101 0.899 18 N -0.342 5.342 19 C 0.390 3.610 20 O -0.429 6.429 21 C -0.159 4.159 22 N -0.120 5.120 23 C -0.175 4.175 24 C -0.094 4.094 25 C -0.102 4.102 26 C -0.133 4.133 27 C -0.157 4.157 28 C -0.056 4.056 29 N 0.011 4.989 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.245 0.755 44 H 0.206 0.794 45 H 0.169 0.831 46 H 0.159 0.841 47 H 0.171 0.829 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.397 2.803 22.508 23.858 hybrid contribution 0.014 -0.713 2.452 2.553 sum -7.383 2.089 24.960 26.113 Atomic orbital electron populations 1.21806 0.95087 1.01415 1.01232 1.21358 0.94659 0.97021 0.96239 1.21773 1.02712 0.94335 0.99869 1.20916 0.84128 0.96501 0.94566 1.44107 1.01068 1.69718 1.16993 1.19946 0.99041 1.40826 0.87663 0.92668 1.25788 0.99644 1.00875 0.96225 1.70748 1.30693 1.16734 1.37493 0.83573 0.75538 0.75876 0.75733 1.22246 1.21219 1.21896 1.20856 0.96844 0.93974 0.85966 1.22458 0.94495 1.01937 0.99471 1.21079 0.93997 0.96724 0.82016 0.89906 1.45982 1.64045 1.15055 1.09132 1.16144 0.78070 0.85443 0.81383 1.90825 1.52196 1.15260 1.84620 1.22517 1.16504 0.89707 0.87187 1.69931 1.10337 1.10436 1.21307 1.22717 1.08422 0.97747 0.88609 1.20038 1.05857 0.90795 0.92744 1.20561 1.00082 0.97869 0.91691 1.21187 0.98856 0.92699 1.00583 1.20996 1.01386 1.01471 0.91881 1.22138 1.00789 0.85631 0.97064 1.42420 1.37924 1.08848 1.09735 0.93323 0.92332 0.93081 0.90970 0.92670 0.94640 0.89568 0.96462 0.91979 0.96425 0.92369 0.92668 0.91522 0.75502 0.79435 0.83148 0.84139 0.82947 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.31 37.16 0.31 -1.91 16 2 C -0.09 -1.64 0.56 -154.61 -0.09 -1.73 16 3 C -0.13 -2.29 7.82 37.16 0.29 -2.00 16 4 C 0.17 3.76 3.33 -3.93 -0.01 3.75 16 5 N -0.60 -14.54 2.30 -172.58 -0.40 -14.94 16 6 C -0.35 -9.43 9.49 -15.06 -0.14 -9.57 16 7 H 0.06 1.52 7.94 -52.49 -0.42 1.11 16 8 C -0.02 -0.65 4.68 -17.43 -0.08 -0.73 16 9 N -0.92 -27.09 12.41 55.49 0.69 -26.41 16 10 Si 1.06 25.08 29.99 -169.99 -5.10 19.98 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 15 C -0.14 -2.67 5.31 -26.61 -0.14 -2.81 16 16 C 0.17 2.93 1.57 -67.89 -0.11 2.82 16 17 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 18 N -0.69 -10.94 4.28 -55.18 -0.24 -11.18 16 19 C 0.61 9.92 7.74 -13.02 -0.10 9.82 16 20 O -0.55 -10.07 14.99 5.13 0.08 -10.00 16 21 C 0.09 1.33 7.82 -153.91 -1.20 0.12 16 22 N -0.40 -5.55 10.79 -10.62 -0.11 -5.67 16 23 C -0.01 -0.14 12.00 -17.05 -0.20 -0.34 16 24 C 0.02 0.18 6.80 -84.21 -0.57 -0.39 16 25 C -0.08 -0.57 10.11 -39.45 -0.40 -0.97 16 26 C -0.11 -0.68 10.08 -39.48 -0.40 -1.07 16 27 C -0.14 -0.98 9.98 -39.89 -0.40 -1.38 16 28 C 0.07 0.70 10.52 -16.71 -0.18 0.52 16 29 N -0.32 -4.05 2.95 -58.89 -0.17 -4.22 16 30 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.53 6.58 -51.93 -0.34 0.19 16 36 H 0.09 2.20 6.30 -51.93 -0.33 1.87 16 37 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 38 H 0.27 8.04 6.71 -40.82 -0.27 7.77 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.25 6.34 -51.93 -0.33 0.92 16 43 H 0.41 6.05 6.30 -40.82 -0.26 5.79 16 44 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 46 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 47 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 48 H 0.18 1.96 6.77 -52.49 -0.36 1.61 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -32.60 378.25 -9.81 -42.40 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.81 Total: 6.98 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.45 Total: -2.66 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.23 Total: -62.42 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.60 -9.81 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940888317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.689 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds