Wall clock time and date at job start Wed Apr 1 2020 01:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40388 * 120.22427 * 2 1 4 4 C 1.35022 * 120.44759 * 179.97438 * 3 2 1 5 5 N 1.36535 * 120.59336 * 359.97438 * 4 3 2 6 6 C 1.36248 * 132.78107 * 180.02562 * 5 4 3 7 7 N 1.30183 * 109.82095 * 180.02562 * 6 5 4 8 8 C 1.34881 * 109.73575 * 0.02562 * 7 6 5 9 9 C 1.46286 * 126.49822 * 179.97438 * 8 7 6 10 10 O 1.21774 * 120.00139 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99938 * 0.02562 * 9 8 7 12 12 C 1.46505 * 120.00070 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.49914 * 35.05597 * 12 11 9 14 14 C 1.53039 * 109.49330 * 274.99256 * 12 11 9 15 15 C 1.53040 * 109.53702 * 178.68063 * 14 12 11 16 16 C 1.53191 * 109.31204 * 61.36880 * 15 14 12 17 17 N 1.46927 * 108.77380 * 305.36769 * 16 15 14 18 18 C 1.36946 * 120.62610 * 233.60940 * 17 16 15 19 19 H 1.08002 * 119.99609 * 151.57177 * 18 17 16 20 20 C 1.38814 * 120.00091 * 331.56585 * 18 17 16 21 21 N 1.31619 * 119.99684 * 160.51895 * 20 18 17 22 22 Si 1.86796 * 120.00121 * 340.52498 * 20 18 17 23 23 H 1.48500 * 109.47345 * 94.85326 * 22 20 18 24 24 H 1.48493 * 109.47180 * 214.86124 * 22 20 18 25 25 H 1.48502 * 109.47312 * 334.85962 * 22 20 18 26 26 C 1.46923 * 118.74214 * 53.60380 * 17 16 15 27 27 H 1.08999 * 109.58513 * 66.18482 * 26 17 16 28 28 C 1.53005 * 109.58730 * 186.60405 * 26 17 16 29 29 C 1.37269 * 120.03425 * 0.02726 * 5 4 3 30 30 C 1.36341 * 120.21810 * 179.76301 * 2 1 3 31 31 H 1.08998 * 109.47143 * 89.99118 * 1 2 3 32 32 H 1.08997 * 109.46976 * 209.99782 * 1 2 3 33 33 H 1.09000 * 109.46360 * 329.99187 * 1 2 3 34 34 H 1.08005 * 119.77953 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.70880 * 180.02562 * 4 3 2 36 36 H 1.08005 * 125.08904 * 0.04850 * 6 5 4 37 37 H 0.97002 * 119.99900 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.46431 * 298.70269 * 14 12 11 39 39 H 1.09006 * 109.46121 * 58.66299 * 14 12 11 40 40 H 1.09001 * 109.49848 * 181.31264 * 15 14 12 41 41 H 1.08994 * 109.49872 * 301.41544 * 15 14 12 42 42 H 1.09008 * 109.58980 * 65.14884 * 16 15 14 43 43 H 1.09001 * 109.59119 * 185.57645 * 16 15 14 44 44 H 0.97004 * 119.99675 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47065 * 179.28777 * 28 26 17 46 46 H 1.08991 * 109.47097 * 299.29315 * 28 26 17 47 47 H 1.09006 * 109.46414 * 59.29476 * 28 26 17 48 48 H 1.07997 * 120.40175 * 359.96899 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2130 0.0000 4 6 3.5639 1.2183 0.0005 5 7 4.2634 0.0457 0.0016 6 6 5.5963 -0.2367 0.0027 7 7 5.7742 -1.5263 0.0029 8 6 4.5788 -2.1511 0.0013 9 6 4.3523 -3.5963 0.0004 10 8 3.2162 -4.0346 -0.0006 11 7 5.4011 -4.4427 0.0017 12 6 5.1744 -5.8901 0.0002 13 1 4.2882 -6.1189 -0.5917 14 6 4.9687 -6.3762 1.4367 15 6 4.6990 -7.8827 1.4335 16 6 5.9102 -8.6129 0.8448 17 7 6.2040 -8.0496 -0.4800 18 6 6.3015 -8.8625 -1.5778 19 1 6.0604 -8.4777 -2.5577 20 6 6.7104 -10.1809 -1.4310 21 7 6.4481 -11.0601 -2.3747 22 14 7.6326 -10.7072 0.1057 23 1 6.6729 -11.2636 1.0929 24 1 8.6348 -11.7440 -0.2491 25 1 8.3235 -9.5323 0.6953 26 6 6.3909 -6.5976 -0.6047 27 1 7.2917 -6.2979 -0.0692 28 6 6.5204 -6.2222 -2.0823 29 6 3.5948 -1.1531 0.0016 30 6 2.1932 -1.1781 0.0049 31 1 -0.3633 0.0002 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5140 34 1 1.6737 2.1484 -0.0004 35 1 4.0955 2.1584 0.0009 36 1 6.3868 0.4991 0.0038 37 1 6.3061 -4.0936 0.0028 38 1 5.8644 -6.1689 2.0221 39 1 4.1183 -5.8561 1.8779 40 1 4.5295 -8.2241 2.4547 41 1 3.8176 -8.0933 0.8279 42 1 6.7719 -8.4775 1.4986 43 1 5.6853 -9.6751 0.7485 44 1 6.7341 -11.9814 -2.2723 45 1 6.6464 -5.1433 -2.1734 46 1 7.3864 -6.7266 -2.5108 47 1 5.6205 -6.5292 -2.6153 48 1 1.6634 -2.1192 0.0093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993516632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:53 Heat of formation + Delta-G solvation = 72.129430 kcal Electronic energy + Delta-G solvation = -29922.434339 eV Core-core repulsion = 25979.056945 eV Total energy + Delta-G solvation = -3943.377394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -43.10382 -39.54686 -38.18209 -37.62646 -34.32661 -34.29585 -32.65773 -31.66685 -31.47921 -30.32679 -29.55481 -27.25924 -26.22260 -24.84841 -24.19187 -23.38857 -22.40958 -21.77596 -20.75962 -20.04277 -19.51322 -18.31795 -16.96180 -16.60847 -16.42025 -16.30497 -15.87558 -15.48936 -15.03945 -14.81280 -14.55409 -14.46135 -14.22685 -13.88135 -13.65915 -13.44624 -13.40816 -13.11502 -12.92272 -12.44298 -12.33948 -12.00696 -11.94509 -11.86382 -11.74967 -11.26636 -11.19637 -10.82402 -10.73412 -10.69831 -10.58194 -10.32930 -10.23870 -9.90870 -9.81082 -9.70731 -9.46740 -9.36261 -8.68698 -8.52261 -7.75482 -6.90626 -5.88004 -3.25615 0.31368 0.76564 2.16695 2.22345 2.91743 3.37938 3.45995 3.53537 3.56646 3.67934 3.98330 4.17514 4.27270 4.32760 4.50593 4.59241 4.70460 4.97095 5.04208 5.11641 5.20000 5.22526 5.32306 5.36774 5.47211 5.54026 5.59922 5.63210 5.66751 5.82571 5.98194 5.99924 6.09014 6.12431 6.20075 6.30626 6.32489 6.42402 6.51643 6.57280 6.61056 6.74402 6.75178 6.80717 6.90221 7.05186 7.14626 7.37459 7.92033 8.02557 8.40851 8.53818 8.99727 9.78578 10.15052 11.27484 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002493 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.214153 B =11226.808222 C =11567.198770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.129 4.129 4 C 0.052 3.948 5 N -0.368 5.368 6 C 0.142 3.858 7 N -0.417 5.417 8 C -0.058 4.058 9 C 0.604 3.396 10 O -0.548 6.548 11 N -0.703 5.703 12 C 0.131 3.869 13 H 0.091 0.909 14 C -0.118 4.118 15 C -0.132 4.132 16 C 0.124 3.876 17 N -0.598 5.598 18 C -0.258 4.258 19 H 0.093 0.907 20 C 0.024 3.976 21 N -0.910 5.910 22 Si 0.882 3.118 23 H -0.290 1.290 24 H -0.305 1.305 25 H -0.269 1.269 26 C 0.172 3.828 27 H 0.033 0.967 28 C -0.137 4.137 29 C 0.080 3.920 30 C -0.071 4.071 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.217 0.783 37 H 0.404 0.596 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.262 0.738 45 H 0.042 0.958 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 28.853 6.881 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.070 4.070 5 N -0.040 5.040 6 C -0.135 4.135 7 N -0.131 5.131 8 C -0.193 4.193 9 C 0.390 3.610 10 O -0.426 6.426 11 N -0.353 5.353 12 C 0.026 3.974 13 H 0.109 0.891 14 C -0.157 4.157 15 C -0.171 4.171 16 C -0.002 4.002 17 N -0.322 5.322 18 C -0.386 4.386 19 H 0.110 0.890 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.712 3.288 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.194 1.194 26 C 0.064 3.936 27 H 0.051 0.949 28 C -0.194 4.194 29 C -0.033 4.033 30 C -0.091 4.091 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.233 0.767 37 H 0.239 0.761 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.293 27.979 6.785 29.699 hybrid contribution 0.419 0.359 0.912 1.066 sum -6.875 28.338 7.697 30.159 Atomic orbital electron populations 1.20780 0.89660 1.03447 1.02983 1.19963 0.97266 0.92126 0.99392 1.20821 0.92320 0.99375 1.02443 1.21653 0.93054 0.88575 1.03690 1.43019 1.08598 1.06346 1.46014 1.25024 0.82404 0.94144 1.11889 1.70056 1.25748 1.04162 1.13166 1.20598 0.87453 0.93829 1.17385 1.16456 0.85039 0.83097 0.76435 1.90800 1.22254 1.77724 1.51794 1.45840 1.09076 1.06807 1.73527 1.21744 1.01514 0.77255 0.96924 0.89091 1.21779 1.00923 0.96500 0.96507 1.21998 1.00552 0.94548 1.00050 1.21400 0.94248 0.97675 0.86830 1.44356 1.82042 1.00997 1.04802 1.18937 1.39429 0.92073 0.88122 0.88999 1.25275 0.99178 0.96239 0.96779 1.69826 1.47973 1.02759 1.34722 0.86954 0.80377 0.77765 0.83669 1.21731 1.23339 1.19433 1.20566 0.92936 0.84809 0.95254 0.94915 1.21825 1.03094 0.98626 0.95900 1.19276 0.93233 0.85110 1.05652 1.20698 0.89748 1.00067 0.98582 0.90497 0.90714 0.91125 0.83191 0.81321 0.76678 0.76144 0.92616 0.92505 0.92576 0.91472 0.95584 0.90922 0.92849 0.93915 0.91545 0.92256 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 36.01 0.36 -0.25 16 2 C -0.08 -0.66 5.89 -104.50 -0.62 -1.28 16 3 C -0.13 -0.73 9.67 -39.92 -0.39 -1.12 16 4 C 0.05 0.31 10.95 -16.60 -0.18 0.13 16 5 N -0.37 -3.53 2.94 -62.18 -0.18 -3.71 16 6 C 0.14 1.35 12.73 -89.53 -1.14 0.21 16 7 N -0.42 -5.47 10.90 -10.53 -0.11 -5.59 16 8 C -0.06 -0.86 7.05 -82.58 -0.58 -1.45 16 9 C 0.60 10.30 7.74 -13.03 -0.10 10.20 16 10 O -0.55 -10.59 15.42 5.12 0.08 -10.52 16 11 N -0.70 -11.53 4.57 -55.11 -0.25 -11.78 16 12 C 0.13 2.44 1.99 -67.81 -0.14 2.30 16 13 H 0.09 1.92 7.58 -51.93 -0.39 1.53 16 14 C -0.12 -2.11 5.46 -26.69 -0.15 -2.26 16 15 C -0.13 -2.50 6.08 -26.61 -0.16 -2.67 16 16 C 0.12 2.77 4.19 -3.71 -0.02 2.75 16 17 N -0.60 -14.34 2.76 -164.77 -0.45 -14.80 16 18 C -0.26 -7.16 9.07 -15.05 -0.14 -7.29 16 19 H 0.09 2.70 6.36 -52.49 -0.33 2.37 16 20 C 0.02 0.70 5.24 -17.43 -0.09 0.60 16 21 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 22 Si 0.88 22.64 24.35 -169.99 -4.14 18.50 16 23 H -0.29 -7.23 6.72 56.52 0.38 -6.85 16 24 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 25 H -0.27 -6.77 6.44 56.52 0.36 -6.40 16 26 C 0.17 3.47 3.03 -67.60 -0.20 3.26 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 C -0.14 -2.66 7.83 37.16 0.29 -2.37 16 29 C 0.08 1.02 6.72 -83.98 -0.56 0.45 16 30 C -0.07 -0.80 9.38 -39.54 -0.37 -1.17 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 34 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 35 H 0.17 0.32 8.06 -52.49 -0.42 -0.10 16 36 H 0.22 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.40 6.04 8.30 -40.82 -0.34 5.71 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.03 0.58 6.95 -51.92 -0.36 0.22 16 43 H 0.07 1.77 4.61 -51.93 -0.24 1.53 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.04 0.71 7.78 -51.93 -0.40 0.31 16 46 H 0.07 1.36 7.65 -51.93 -0.40 0.97 16 47 H 0.06 1.24 7.41 -51.93 -0.38 0.85 16 48 H 0.16 1.94 7.17 -52.49 -0.38 1.57 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.04 379.56 -9.82 -44.86 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.07 Total: 4.56 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -4.18 Total: 0.07 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.23 Total: -63.19 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.04 -9.82 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993516632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.986 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds