Wall clock time and date at job start Wed Apr 1 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40388 * 120.22427 * 2 1 4 4 C 1.35022 * 120.44759 * 179.97438 * 3 2 1 5 5 N 1.36535 * 120.59336 * 359.97438 * 4 3 2 6 6 C 1.36248 * 132.78107 * 180.02562 * 5 4 3 7 7 N 1.30183 * 109.82095 * 180.02562 * 6 5 4 8 8 C 1.34881 * 109.73575 * 0.02562 * 7 6 5 9 9 C 1.46286 * 126.49822 * 179.97438 * 8 7 6 10 10 O 1.21774 * 120.00139 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99938 * 0.02562 * 9 8 7 12 12 C 1.46505 * 120.00070 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.49914 * 35.05597 * 12 11 9 14 14 C 1.53039 * 109.49330 * 274.99256 * 12 11 9 15 15 C 1.53040 * 109.53702 * 178.68063 * 14 12 11 16 16 C 1.53191 * 109.31204 * 61.36880 * 15 14 12 17 17 N 1.46927 * 108.77380 * 305.36769 * 16 15 14 18 18 C 1.36946 * 120.62610 * 233.60940 * 17 16 15 19 19 H 1.08002 * 119.99609 * 151.57177 * 18 17 16 20 20 C 1.38814 * 120.00091 * 331.56585 * 18 17 16 21 21 N 1.31619 * 119.99684 * 160.51895 * 20 18 17 22 22 Si 1.86796 * 120.00121 * 340.52498 * 20 18 17 23 23 H 1.48500 * 109.47345 * 94.85326 * 22 20 18 24 24 H 1.48493 * 109.47180 * 214.86124 * 22 20 18 25 25 H 1.48502 * 109.47312 * 334.85962 * 22 20 18 26 26 C 1.46923 * 118.74214 * 53.60380 * 17 16 15 27 27 H 1.08999 * 109.58513 * 66.18482 * 26 17 16 28 28 C 1.53005 * 109.58730 * 186.60405 * 26 17 16 29 29 C 1.37269 * 120.03425 * 0.02726 * 5 4 3 30 30 C 1.36341 * 120.21810 * 179.76301 * 2 1 3 31 31 H 1.08998 * 109.47143 * 89.99118 * 1 2 3 32 32 H 1.08997 * 109.46976 * 209.99782 * 1 2 3 33 33 H 1.09000 * 109.46360 * 329.99187 * 1 2 3 34 34 H 1.08005 * 119.77953 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.70880 * 180.02562 * 4 3 2 36 36 H 1.08005 * 125.08904 * 0.04850 * 6 5 4 37 37 H 0.97002 * 119.99900 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.46431 * 298.70269 * 14 12 11 39 39 H 1.09006 * 109.46121 * 58.66299 * 14 12 11 40 40 H 1.09001 * 109.49848 * 181.31264 * 15 14 12 41 41 H 1.08994 * 109.49872 * 301.41544 * 15 14 12 42 42 H 1.09008 * 109.58980 * 65.14884 * 16 15 14 43 43 H 1.09001 * 109.59119 * 185.57645 * 16 15 14 44 44 H 0.97004 * 119.99675 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47065 * 179.28777 * 28 26 17 46 46 H 1.08991 * 109.47097 * 299.29315 * 28 26 17 47 47 H 1.09006 * 109.46414 * 59.29476 * 28 26 17 48 48 H 1.07997 * 120.40175 * 359.96899 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2130 0.0000 4 6 3.5639 1.2183 0.0005 5 7 4.2634 0.0457 0.0016 6 6 5.5963 -0.2367 0.0027 7 7 5.7742 -1.5263 0.0029 8 6 4.5788 -2.1511 0.0013 9 6 4.3523 -3.5963 0.0004 10 8 3.2162 -4.0346 -0.0006 11 7 5.4011 -4.4427 0.0017 12 6 5.1744 -5.8901 0.0002 13 1 4.2882 -6.1189 -0.5917 14 6 4.9687 -6.3762 1.4367 15 6 4.6990 -7.8827 1.4335 16 6 5.9102 -8.6129 0.8448 17 7 6.2040 -8.0496 -0.4800 18 6 6.3015 -8.8625 -1.5778 19 1 6.0604 -8.4777 -2.5577 20 6 6.7104 -10.1809 -1.4310 21 7 6.4481 -11.0601 -2.3747 22 14 7.6326 -10.7072 0.1057 23 1 6.6729 -11.2636 1.0929 24 1 8.6348 -11.7440 -0.2491 25 1 8.3235 -9.5323 0.6953 26 6 6.3909 -6.5976 -0.6047 27 1 7.2917 -6.2979 -0.0692 28 6 6.5204 -6.2222 -2.0823 29 6 3.5948 -1.1531 0.0016 30 6 2.1932 -1.1781 0.0049 31 1 -0.3633 0.0002 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5140 34 1 1.6737 2.1484 -0.0004 35 1 4.0955 2.1584 0.0009 36 1 6.3868 0.4991 0.0038 37 1 6.3061 -4.0936 0.0028 38 1 5.8644 -6.1689 2.0221 39 1 4.1183 -5.8561 1.8779 40 1 4.5295 -8.2241 2.4547 41 1 3.8176 -8.0933 0.8279 42 1 6.7719 -8.4775 1.4986 43 1 5.6853 -9.6751 0.7485 44 1 6.7341 -11.9814 -2.2723 45 1 6.6464 -5.1433 -2.1734 46 1 7.3864 -6.7266 -2.5108 47 1 5.6205 -6.5292 -2.6153 48 1 1.6634 -2.1192 0.0093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993516632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:51 Heat of formation + Delta-G solvation = 49.564339 kcal Electronic energy + Delta-G solvation = -29923.412835 eV Core-core repulsion = 25979.056945 eV Total energy + Delta-G solvation = -3944.355890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -43.84839 -40.95230 -39.33896 -38.73104 -35.92353 -35.04434 -34.39685 -33.51557 -32.21502 -31.79198 -30.44750 -28.33815 -27.60543 -26.72737 -25.16461 -24.36672 -23.43009 -22.80204 -22.41518 -21.39018 -20.98551 -19.26219 -18.39769 -17.75635 -17.53300 -17.32466 -17.10834 -16.88477 -16.19169 -16.03786 -15.85316 -15.57492 -15.27534 -15.15252 -15.04973 -14.87229 -14.66249 -14.35776 -14.26140 -13.68227 -13.51904 -13.42722 -12.97177 -12.95771 -12.94118 -12.68635 -12.58883 -12.49165 -12.45636 -12.06011 -11.93133 -11.65661 -11.60158 -11.44661 -11.43033 -11.32205 -11.07432 -10.68545 -10.35665 -10.04439 -8.92165 -8.51834 -8.11877 -5.46389 -0.38769 0.09671 1.28470 1.32995 1.43432 1.48956 1.52997 2.21725 2.27133 2.45506 2.58423 3.07928 3.28577 3.40297 3.43557 3.70221 3.78906 3.82129 3.84120 3.93187 4.05478 4.13556 4.20937 4.26114 4.37404 4.48532 4.53482 4.64147 4.67600 4.69825 4.78714 4.84030 4.84487 4.88698 4.98139 5.00741 5.01658 5.12682 5.15405 5.21000 5.25872 5.34277 5.39326 5.41330 5.54182 5.59452 5.90601 6.14615 6.19694 6.45763 6.76823 6.91801 7.28151 7.64152 8.03429 9.07404 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002493 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.214153 B =11226.808222 C =11567.198770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.138 4.138 4 C 0.068 3.932 5 N -0.371 5.371 6 C 0.157 3.843 7 N -0.444 5.444 8 C -0.119 4.119 9 C 0.601 3.399 10 O -0.586 6.586 11 N -0.698 5.698 12 C 0.145 3.855 13 H 0.056 0.944 14 C -0.110 4.110 15 C -0.124 4.124 16 C 0.118 3.882 17 N -0.612 5.612 18 C -0.242 4.242 19 H 0.061 0.939 20 C -0.036 4.036 21 N -0.959 5.959 22 Si 0.945 3.055 23 H -0.278 1.278 24 H -0.313 1.313 25 H -0.255 1.255 26 C 0.170 3.830 27 H 0.053 0.947 28 C -0.127 4.127 29 C 0.081 3.919 30 C -0.131 4.131 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.196 0.804 35 H 0.223 0.777 36 H 0.265 0.735 37 H 0.412 0.588 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.070 34.048 9.117 35.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.158 4.158 4 C -0.053 4.053 5 N -0.042 5.042 6 C -0.121 4.121 7 N -0.158 5.158 8 C -0.250 4.250 9 C 0.390 3.610 10 O -0.467 6.467 11 N -0.347 5.347 12 C 0.039 3.961 13 H 0.074 0.926 14 C -0.149 4.149 15 C -0.164 4.164 16 C -0.007 4.007 17 N -0.337 5.337 18 C -0.371 4.371 19 H 0.079 0.921 20 C -0.230 4.230 21 N -0.606 5.606 22 Si 0.775 3.225 23 H -0.205 1.205 24 H -0.242 1.242 25 H -0.179 1.179 26 C 0.064 3.936 27 H 0.070 0.930 28 C -0.185 4.185 29 C -0.033 4.033 30 C -0.151 4.151 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.213 0.787 35 H 0.239 0.761 36 H 0.281 0.719 37 H 0.248 0.752 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.900 33.201 9.054 35.098 hybrid contribution 0.113 -0.897 0.147 0.916 sum -6.787 32.304 9.201 34.268 Atomic orbital electron populations 1.20918 0.88013 1.04469 1.03854 1.20436 0.98591 0.91957 0.94505 1.21378 0.92576 0.99891 1.01923 1.22703 0.93607 0.88868 1.00127 1.43274 1.08669 1.06433 1.45821 1.25967 0.83201 0.93838 1.09065 1.69926 1.25440 1.06035 1.14420 1.20147 0.89128 0.92726 1.22967 1.16850 0.84358 0.84454 0.75370 1.90760 1.23563 1.78699 1.53660 1.45638 1.09551 1.05604 1.73929 1.21326 0.99092 0.78723 0.96980 0.92552 1.21711 1.01788 0.95502 0.95901 1.21906 0.98195 0.95029 1.01228 1.21490 0.96084 0.96882 0.86221 1.44482 1.82459 1.02206 1.04530 1.18854 1.37495 0.92424 0.88366 0.92087 1.25898 1.00573 0.96440 1.00097 1.69963 1.50102 1.03104 1.37403 0.85914 0.78863 0.77429 0.80343 1.20471 1.24248 1.17949 1.20721 0.94238 0.82847 0.95816 0.92972 1.21714 1.01150 1.00217 0.95371 1.19347 0.93625 0.86108 1.04256 1.20570 0.89699 1.00567 1.04250 0.89499 0.91658 0.88166 0.78691 0.76068 0.71922 0.75176 0.90769 0.92359 0.89391 0.93301 0.94030 0.92979 0.93077 0.91087 0.92895 0.94756 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.03 71.24 0.71 -0.28 16 2 C -0.05 -0.69 5.89 -19.78 -0.12 -0.81 16 3 C -0.14 -0.89 9.67 22.05 0.21 -0.68 16 4 C 0.07 0.45 10.95 83.22 0.91 1.36 16 5 N -0.37 -6.01 2.94 -350.65 -1.03 -7.04 16 6 C 0.16 2.51 12.73 179.97 2.29 4.80 16 7 N -0.44 -11.29 10.90 -187.24 -2.04 -13.33 16 8 C -0.12 -3.64 7.05 41.23 0.29 -3.35 16 9 C 0.60 21.76 7.74 86.34 0.67 22.42 16 10 O -0.59 -24.63 15.42 -4.58 -0.07 -24.70 16 11 N -0.70 -23.55 4.57 -446.47 -2.04 -25.59 16 12 C 0.15 5.55 1.99 45.07 0.09 5.64 16 13 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 14 C -0.11 -3.88 5.46 30.62 0.17 -3.71 16 15 C -0.12 -4.64 6.08 30.67 0.19 -4.45 16 16 C 0.12 5.18 4.19 86.36 0.36 5.55 16 17 N -0.61 -29.80 2.76 -675.21 -1.86 -31.66 16 18 C -0.24 -13.98 9.07 84.03 0.76 -13.22 16 19 H 0.06 3.83 6.36 -2.91 -0.02 3.81 16 20 C -0.04 -2.14 5.24 84.86 0.45 -1.70 16 21 N -0.96 -61.75 13.97 21.65 0.30 -61.45 16 22 Si 0.95 47.52 24.35 68.60 1.67 49.19 16 23 H -0.28 -13.31 6.72 99.48 0.67 -12.64 16 24 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 25 H -0.26 -12.11 6.44 99.48 0.64 -11.47 16 26 C 0.17 6.94 3.03 44.98 0.14 7.08 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 C -0.13 -5.13 7.83 71.98 0.56 -4.57 16 29 C 0.08 2.07 6.72 39.23 0.26 2.34 16 30 C -0.13 -3.05 9.38 22.30 0.21 -2.84 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 33 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 34 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 35 H 0.22 -0.88 8.06 -2.91 -0.02 -0.91 16 36 H 0.27 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.41 12.39 8.30 -92.71 -0.77 11.62 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.73 6.95 -2.38 -0.02 1.71 16 43 H 0.05 2.51 4.61 -2.39 -0.01 2.50 16 44 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 45 H 0.07 2.42 7.78 -2.39 -0.02 2.40 16 46 H 0.05 2.25 7.65 -2.39 -0.02 2.23 16 47 H 0.03 1.52 7.41 -2.38 -0.02 1.50 16 48 H 0.13 3.66 7.17 -2.91 -0.02 3.64 16 Total: -1.00 -84.12 379.56 3.20 -80.92 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.11 Total: 20.08 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 8.16 Total: 13.58 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -6.67 Total: -139.07 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.07 Total: -24.70 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.67 Total: 49.19 kcal Total: -84.12 3.20 -80.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993516632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.487 kcal (2) G-P(sol) polarization free energy of solvation -84.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds