Wall clock time and date at job start Wed Apr 1 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 126.39026 * 2 1 4 4 N 1.33182 * 108.61748 * 180.02562 * 3 2 1 5 5 C 1.32649 * 109.13220 * 0.02562 * 4 3 2 6 6 C 1.40649 * 132.15652 * 180.31990 * 5 4 3 7 7 C 1.38435 * 119.09009 * 180.20736 * 6 5 4 8 8 C 1.47657 * 120.36692 * 179.73767 * 7 6 5 9 9 O 1.21581 * 120.00600 * 359.72622 * 8 7 6 10 10 N 1.34782 * 119.99512 * 179.72921 * 8 7 6 11 11 C 1.46498 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47235 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.70470 * 299.86259 * 12 11 10 14 14 C 1.52762 * 109.51487 * 179.74659 * 12 11 10 15 15 C 1.53034 * 109.38667 * 185.70741 * 14 12 11 16 16 C 1.53040 * 109.54191 * 61.23595 * 15 14 12 17 17 C 1.53186 * 109.30997 * 298.63797 * 16 15 14 18 18 N 1.46926 * 109.58749 * 60.21381 * 12 11 10 19 19 C 1.36932 * 120.63285 * 353.42527 * 18 12 11 20 20 H 1.07997 * 119.99666 * 30.84275 * 19 18 12 21 21 C 1.38811 * 120.00192 * 210.85252 * 19 18 12 22 22 N 1.31619 * 119.99665 * 13.93423 * 21 19 18 23 23 Si 1.86794 * 120.00026 * 193.93465 * 21 19 18 24 24 H 1.48496 * 109.47296 * 269.99890 * 23 21 19 25 25 H 1.48505 * 109.47318 * 30.00033 * 23 21 19 26 26 H 1.48498 * 109.47332 * 149.99919 * 23 21 19 27 27 C 1.41769 * 119.25777 * 359.46192 * 7 6 5 28 28 C 1.34536 * 120.14781 * 0.25671 * 27 7 6 29 29 N 1.36435 * 126.38838 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47147 * 269.97603 * 1 2 3 31 31 H 1.09004 * 109.47030 * 29.97019 * 1 2 3 32 32 H 1.08999 * 109.47788 * 149.97573 * 1 2 3 33 33 H 1.07995 * 125.69199 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.44961 * 359.96855 * 6 5 4 35 35 H 0.97001 * 120.00331 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47588 * 59.99533 * 11 10 8 37 37 H 1.08997 * 109.46833 * 299.99815 * 11 10 8 38 38 H 1.09007 * 109.56344 * 65.66666 * 14 12 11 39 39 H 1.09004 * 109.38437 * 305.63548 * 14 12 11 40 40 H 1.08998 * 109.45658 * 301.21084 * 15 14 12 41 41 H 1.09010 * 109.44843 * 181.25415 * 15 14 12 42 42 H 1.09001 * 109.49595 * 178.68197 * 16 15 14 43 43 H 1.09000 * 109.49499 * 58.58932 * 16 15 14 44 44 H 1.08996 * 109.58908 * 294.84319 * 17 16 15 45 45 H 1.09008 * 109.70181 * 174.49113 * 17 16 15 46 46 H 0.97007 * 119.99650 * 179.97438 * 22 21 19 47 47 H 1.08001 * 119.92697 * 180.27031 * 27 7 6 48 48 H 1.07999 * 119.52589 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5788 0.6838 -0.0006 5 6 3.6103 -0.6423 -0.0015 6 6 4.6751 -1.5613 0.0035 7 6 4.3942 -2.9168 -0.0035 8 6 5.4902 -3.9062 -0.0044 9 8 6.6471 -3.5321 -0.0040 10 7 5.2082 -5.2242 -0.0058 11 6 6.2956 -6.2059 -0.0061 12 6 5.7075 -7.6184 -0.0070 13 1 5.0944 -7.7618 0.8828 14 6 6.8406 -8.6429 -0.0137 15 6 6.2535 -10.0487 -0.1582 16 6 5.4972 -10.1538 -1.4844 17 6 4.3442 -9.1452 -1.4913 18 7 4.8837 -7.8081 -1.2086 19 6 4.6283 -6.7601 -2.0521 20 1 5.3554 -5.9699 -2.1670 21 6 3.4348 -6.7133 -2.7594 22 7 2.4410 -7.5096 -2.4266 23 14 3.2392 -5.5203 -4.1834 24 1 2.7028 -4.2308 -3.6787 25 1 4.5601 -5.2909 -4.8221 26 1 2.2992 -6.0907 -5.1815 27 6 3.0425 -3.3444 -0.0039 28 6 2.0474 -2.4389 -0.0027 29 7 2.3164 -1.0983 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9783 2.1179 0.0004 34 1 5.6978 -1.2140 0.0087 35 1 4.2853 -5.5228 -0.0057 36 1 6.9093 -6.0688 0.8843 37 1 6.9100 -6.0672 -0.8956 38 1 7.3989 -8.5759 0.9202 39 1 7.5076 -8.4393 -0.8515 40 1 5.5683 -10.2426 0.6671 41 1 7.0597 -10.7823 -0.1407 42 1 5.0992 -11.1622 -1.5973 43 1 6.1762 -9.9358 -2.3087 44 1 3.6176 -9.4155 -0.7251 45 1 3.8616 -9.1454 -2.4688 46 1 1.6068 -7.4766 -2.9207 47 1 2.8111 -4.3993 -0.0049 48 1 1.0213 -2.7758 -0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024440521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:12 Heat of formation + Delta-G solvation = 71.170234 kcal Electronic energy + Delta-G solvation = -30456.689873 eV Core-core repulsion = 26513.270885 eV Total energy + Delta-G solvation = -3943.418988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.84996 -39.54517 -37.91596 -36.82726 -34.34204 -33.88312 -33.16037 -31.63832 -30.70215 -30.01034 -29.91534 -27.16919 -25.98532 -24.95904 -23.47125 -23.04864 -22.21279 -21.17476 -20.80023 -20.06901 -19.17560 -17.61704 -17.35649 -16.64808 -16.22134 -16.09052 -15.66899 -15.33711 -14.64728 -14.44118 -14.24484 -14.06341 -13.81318 -13.62617 -13.48648 -13.33597 -13.23160 -13.07097 -12.90621 -12.61502 -12.50478 -12.12211 -11.91073 -11.73978 -11.70561 -11.27976 -11.04758 -10.83749 -10.68903 -10.62404 -10.35622 -10.21756 -10.14473 -10.06424 -9.72530 -9.54980 -9.38755 -8.84324 -8.68770 -8.35651 -7.71997 -6.75355 -5.94349 -3.40398 0.57405 1.10804 2.52535 2.70542 3.12050 3.24426 3.33702 3.39537 3.54403 3.88266 4.28656 4.34568 4.47804 4.57322 4.83211 4.91410 5.07638 5.15247 5.20031 5.23438 5.30752 5.42048 5.46793 5.50163 5.57703 5.61840 5.63698 5.85176 5.90596 5.97753 6.06178 6.09004 6.14427 6.25844 6.31207 6.35336 6.42722 6.54173 6.55588 6.64614 6.67612 6.79312 6.90127 7.00364 7.04703 7.31059 7.57592 7.70058 7.80125 8.10176 8.30942 8.68680 9.06797 9.68279 10.26479 11.12051 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.003539 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.813898 B = 7908.955463 C = 8981.860004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.069 4.069 3 C 0.031 3.969 4 N -0.483 5.483 5 C 0.210 3.790 6 C -0.013 4.013 7 C -0.109 4.109 8 C 0.555 3.445 9 O -0.554 6.554 10 N -0.683 5.683 11 C 0.133 3.867 12 C 0.160 3.840 13 H 0.033 0.967 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.145 4.145 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.251 4.251 20 H 0.070 0.930 21 C 0.011 3.989 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.286 1.286 25 H -0.279 1.279 26 H -0.289 1.289 27 C -0.103 4.103 28 C 0.042 3.958 29 N -0.349 5.349 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.180 0.820 34 H 0.164 0.836 35 H 0.415 0.585 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.084 0.916 46 H 0.254 0.746 47 H 0.163 0.837 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 5.709 6.831 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.184 4.184 3 C -0.123 4.123 4 N -0.203 5.203 5 C -0.031 4.031 6 C -0.034 4.034 7 C -0.118 4.118 8 C 0.341 3.659 9 O -0.434 6.434 10 N -0.334 5.334 11 C 0.010 3.990 12 C 0.054 3.946 13 H 0.050 0.950 14 C -0.168 4.168 15 C -0.145 4.145 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.088 0.912 21 C -0.188 4.188 22 N -0.542 5.542 23 Si 0.717 3.283 24 H -0.213 1.213 25 H -0.204 1.204 26 H -0.215 1.215 27 C -0.124 4.124 28 C -0.078 4.078 29 N -0.021 5.021 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.197 0.803 34 H 0.181 0.819 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.180 0.820 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.151 6.416 6.752 9.559 hybrid contribution -1.440 -0.196 -1.019 1.775 sum -3.591 6.219 5.733 9.189 Atomic orbital electron populations 1.20179 0.86541 1.03552 1.02704 1.21300 0.94846 0.85342 1.16896 1.22305 0.87941 0.98539 1.03531 1.70646 1.21759 1.06160 1.21690 1.20703 0.83677 0.90863 1.07890 1.20646 0.98140 0.89490 0.95117 1.20083 0.93858 0.93575 1.04326 1.17799 0.87711 0.82757 0.77667 1.90745 1.20574 1.80318 1.51811 1.45916 1.11899 1.04316 1.71274 1.21360 0.89146 0.87459 1.01071 1.20649 0.91878 0.91016 0.91106 0.94994 1.21870 0.98350 0.95903 1.00644 1.21360 0.98752 0.95989 0.98394 1.22193 1.00188 0.99459 0.96539 1.20762 0.91042 0.82078 1.01343 1.44076 1.58792 1.05902 1.22522 1.19209 0.98765 1.01806 1.18317 0.91247 1.25018 0.95150 0.98512 1.00163 1.70008 1.03265 1.40451 1.40487 0.86533 0.77873 0.80823 0.83118 1.21271 1.20400 1.21518 1.21050 0.90808 1.00900 0.99604 1.21416 1.01496 0.79950 1.04978 1.42721 1.08837 1.05790 1.44780 0.90937 0.89794 0.91586 0.80301 0.81887 0.74634 0.92291 0.91257 0.92923 0.92038 0.92863 0.93676 0.93521 0.92817 0.96332 0.89735 0.93583 0.81983 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.30 36.01 0.37 -0.21 16 2 C -0.07 -0.86 7.02 -81.54 -0.57 -1.43 16 3 C 0.03 0.40 11.75 -17.96 -0.21 0.19 16 4 N -0.48 -7.87 11.31 -12.80 -0.14 -8.01 16 5 C 0.21 3.45 7.79 -155.97 -1.22 2.23 16 6 C -0.01 -0.21 9.70 -38.60 -0.37 -0.58 16 7 C -0.11 -1.82 5.90 -104.63 -0.62 -2.44 16 8 C 0.55 10.30 7.77 -12.41 -0.10 10.20 16 9 O -0.55 -11.62 16.36 5.29 0.09 -11.53 16 10 N -0.68 -12.36 3.79 -61.31 -0.23 -12.59 16 11 C 0.13 2.39 4.42 -4.04 -0.02 2.37 16 12 C 0.16 2.91 2.99 -67.82 -0.20 2.70 16 13 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 14 C -0.13 -2.04 5.34 -26.84 -0.14 -2.18 16 15 C -0.11 -1.67 5.88 -26.69 -0.16 -1.83 16 16 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 17 C 0.17 3.70 5.27 -3.71 -0.02 3.68 16 18 N -0.59 -12.68 2.98 -165.03 -0.49 -13.17 16 19 C -0.25 -5.93 6.98 -15.06 -0.11 -6.04 16 20 H 0.07 1.71 5.85 -52.49 -0.31 1.40 16 21 C 0.01 0.27 4.97 -17.43 -0.09 0.18 16 22 N -0.90 -22.88 11.23 55.49 0.62 -22.25 16 23 Si 0.89 20.44 29.58 -169.99 -5.03 15.41 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.10 -1.52 9.48 -39.54 -0.37 -1.90 16 28 C 0.04 0.57 10.80 -16.68 -0.18 0.39 16 29 N -0.35 -5.08 2.94 -58.55 -0.17 -5.25 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.16 2.62 7.67 -52.48 -0.40 2.22 16 35 H 0.41 7.57 5.46 -40.82 -0.22 7.35 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.37 7.42 -51.93 -0.39 0.98 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 2.06 6.19 -51.92 -0.32 1.74 16 46 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 47 H 0.16 2.33 6.46 -52.49 -0.34 1.99 16 48 H 0.17 1.69 8.04 -52.49 -0.42 1.27 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -29.38 383.10 -10.78 -40.16 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.03 Total: 8.84 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -4.17 Total: 2.62 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.42 Total: -61.27 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.38 -10.78 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024440521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.331 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds