Wall clock time and date at job start Wed Apr 1 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35452 * 126.39268 * 2 1 4 4 N 1.33176 * 108.62450 * 180.02562 * 3 2 1 5 5 C 1.32654 * 109.12424 * 0.02562 * 4 3 2 6 6 C 1.40653 * 132.14520 * 180.32404 * 5 4 3 7 7 C 1.38442 * 119.08546 * 180.19082 * 6 5 4 8 8 C 1.47656 * 120.37113 * 179.72997 * 7 6 5 9 9 O 1.21586 * 119.99623 * 186.91950 * 8 7 6 10 10 N 1.34773 * 120.00029 * 6.92896 * 8 7 6 11 11 C 1.47487 * 125.59296 * 354.35517 * 10 8 7 12 12 C 1.54318 * 107.03600 * 181.07218 * 11 10 8 13 13 C 1.55160 * 103.10473 * 22.24038 * 12 11 10 14 14 H 1.09002 * 111.00505 * 82.51653 * 13 12 11 15 15 C 1.52991 * 111.00954 * 206.33722 * 13 12 11 16 16 H 1.09001 * 109.47228 * 59.99495 * 15 13 12 17 17 C 1.53006 * 109.46905 * 300.00172 * 15 13 12 18 18 N 1.46495 * 109.47456 * 179.97438 * 15 13 12 19 19 C 1.36935 * 120.00554 * 204.99488 * 18 15 13 20 20 H 1.08000 * 119.99647 * 0.02562 * 19 18 15 21 21 C 1.38812 * 120.00395 * 180.02562 * 19 18 15 22 22 N 1.31618 * 119.99871 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99809 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47185 * 90.00258 * 23 21 19 25 25 H 1.48501 * 109.46804 * 210.00240 * 23 21 19 26 26 H 1.48503 * 109.47227 * 329.99916 * 23 21 19 27 27 C 1.47419 * 125.64896 * 174.41097 * 10 8 7 28 28 C 1.41780 * 119.25497 * 359.45667 * 7 6 5 29 29 C 1.34539 * 120.14634 * 0.27659 * 28 7 6 30 30 N 1.36443 * 126.38966 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47068 * 269.99795 * 1 2 3 32 32 H 1.09002 * 109.47111 * 29.99760 * 1 2 3 33 33 H 1.09000 * 109.47085 * 149.99741 * 1 2 3 34 34 H 1.08002 * 125.68477 * 0.02562 * 3 2 1 35 35 H 1.07994 * 120.46120 * 359.94187 * 6 5 4 36 36 H 1.09006 * 110.03276 * 61.70957 * 11 10 8 37 37 H 1.08995 * 109.96652 * 300.39784 * 11 10 8 38 38 H 1.09001 * 110.72396 * 263.79004 * 12 11 10 39 39 H 1.09000 * 110.72533 * 140.69394 * 12 11 10 40 40 H 1.08992 * 109.47332 * 59.99849 * 17 15 13 41 41 H 1.08999 * 109.47022 * 180.02562 * 17 15 13 42 42 H 1.09001 * 109.46624 * 299.99692 * 17 15 13 43 43 H 0.97001 * 119.99951 * 25.00206 * 18 15 13 44 44 H 0.97003 * 120.00232 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.36926 * 37.00437 * 27 10 8 46 46 H 1.09010 * 110.46105 * 274.73372 * 27 10 8 47 47 H 1.08005 * 119.92441 * 180.25182 * 28 7 6 48 48 H 1.08005 * 119.52019 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0903 0.0000 4 7 3.5789 0.6839 -0.0006 5 6 3.6103 -0.6422 -0.0015 6 6 4.6752 -1.5611 0.0035 7 6 4.3944 -2.9167 -0.0031 8 6 5.4904 -3.9061 -0.0041 9 8 5.2415 -5.0888 -0.1368 10 7 6.7666 -3.4983 0.1423 11 6 7.2188 -2.0954 0.1942 12 6 8.7546 -2.1207 0.3426 13 6 9.1378 -3.5216 -0.2033 14 1 9.2023 -3.5128 -1.2913 15 6 10.4473 -4.0126 0.4169 16 1 10.3348 -4.0780 1.4991 17 6 11.5711 -3.0305 0.0795 18 7 10.7764 -5.3352 -0.1202 19 6 11.5636 -6.1914 0.6027 20 1 11.9416 -5.8916 1.5689 21 6 11.8758 -7.4444 0.0935 22 7 12.6321 -8.2674 0.7886 23 14 11.2226 -7.9626 -1.5781 24 1 12.1910 -7.5672 -2.6322 25 1 11.0384 -9.4359 -1.6025 26 1 9.9191 -7.2966 -1.8284 27 6 7.9404 -4.3800 0.2756 28 6 3.0426 -3.3443 -0.0031 29 6 2.0475 -2.4388 -0.0023 30 7 2.3165 -1.0984 -0.0005 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.9783 2.1180 0.0004 35 1 5.6978 -1.2140 0.0084 36 1 6.7719 -1.5905 1.0507 37 1 6.9437 -1.5813 -0.7267 38 1 9.0427 -2.0227 1.3892 39 1 9.2131 -1.3345 -0.2573 40 1 11.3261 -2.0467 0.4794 41 1 12.5042 -3.3805 0.5209 42 1 11.6836 -2.9652 -1.0027 43 1 10.4367 -5.6046 -0.9879 44 1 12.8500 -9.1432 0.4330 45 1 7.8276 -5.2603 -0.3572 46 1 8.0781 -4.6765 1.3156 47 1 2.8112 -4.3993 -0.0042 48 1 1.0214 -2.7758 -0.0027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754792506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:07 Heat of formation + Delta-G solvation = 94.176460 kcal Electronic energy + Delta-G solvation = -29380.493488 eV Core-core repulsion = 25438.072125 eV Total energy + Delta-G solvation = -3942.421363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.24703 -40.44534 -38.21233 -37.15601 -35.57830 -34.38783 -32.59883 -31.78684 -30.86699 -30.54505 -29.05663 -28.52412 -27.18291 -24.83001 -24.13395 -23.49833 -22.72176 -21.73691 -21.24278 -19.91150 -19.75277 -18.24024 -17.59867 -17.37431 -16.82029 -16.50419 -16.14137 -15.63277 -15.12489 -14.91293 -14.51226 -14.25976 -14.05681 -13.93024 -13.75553 -13.57908 -13.51904 -13.11757 -13.00606 -12.85778 -12.65512 -12.54261 -12.30971 -12.19059 -12.10981 -11.77176 -11.31625 -11.18534 -11.00599 -10.88685 -10.64323 -10.58089 -10.48607 -10.26051 -10.09316 -9.95417 -9.57647 -9.23174 -8.93982 -8.73759 -8.14163 -7.27933 -5.76203 -3.12081 0.09575 0.70451 2.14276 2.28755 2.68229 2.75892 3.33703 3.39801 3.43048 3.48034 3.70539 4.01163 4.17768 4.23334 4.43271 4.55375 4.58159 4.60583 4.65373 4.78130 4.86139 4.99280 5.01404 5.08888 5.10266 5.21821 5.27217 5.40956 5.41199 5.52616 5.59934 5.63313 5.66070 5.74459 5.80060 5.89791 5.98703 6.03748 6.11024 6.18123 6.21956 6.27627 6.35536 6.45364 6.61907 6.75637 6.96960 7.35524 7.43549 7.98437 7.99018 8.42569 9.20724 9.93471 10.12358 11.42011 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.002360 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.253400 B =11863.863632 C =12824.944144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.065 4.065 3 C 0.034 3.966 4 N -0.478 5.478 5 C 0.207 3.793 6 C -0.067 4.067 7 C -0.110 4.110 8 C 0.573 3.427 9 O -0.529 6.529 10 N -0.610 5.610 11 C 0.084 3.916 12 C -0.125 4.125 13 C -0.106 4.106 14 H 0.082 0.918 15 C 0.190 3.810 16 H 0.059 0.941 17 C -0.165 4.165 18 N -0.749 5.749 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.276 1.276 27 C 0.117 3.883 28 C -0.092 4.092 29 C 0.043 3.957 30 N -0.352 5.352 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.163 0.837 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.299 20.339 -1.693 31.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.180 4.180 3 C -0.120 4.120 4 N -0.197 5.197 5 C -0.034 4.034 6 C -0.087 4.087 7 C -0.119 4.119 8 C 0.362 3.638 9 O -0.407 6.407 10 N -0.343 5.343 11 C -0.039 4.039 12 C -0.163 4.163 13 C -0.126 4.126 14 H 0.100 0.900 15 C 0.080 3.920 16 H 0.076 0.924 17 C -0.225 4.225 18 N -0.392 5.392 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.202 1.202 27 C -0.004 4.004 28 C -0.113 4.113 29 C -0.078 4.078 30 N -0.024 5.024 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.199 0.801 35 H 0.206 0.794 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.181 0.819 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.719 20.036 -1.578 31.090 hybrid contribution -1.164 -0.983 -1.245 1.967 sum -24.884 19.054 -2.822 31.468 Atomic orbital electron populations 1.20204 0.86357 1.03619 1.02915 1.21368 0.94939 0.85288 1.16377 1.22376 0.87839 0.98722 1.03031 1.70667 1.21856 1.06005 1.21211 1.20780 0.83636 0.90983 1.07989 1.22372 1.00199 0.90246 0.95915 1.20003 0.94338 0.92744 1.04809 1.17527 0.81117 0.87672 0.77479 1.90830 1.82908 1.17138 1.49787 1.48564 1.06207 1.08306 1.71190 1.22691 0.96597 0.83206 1.01370 1.22740 0.92422 0.98145 1.03013 1.22731 0.95339 0.93577 1.00963 0.89970 1.20122 0.89389 0.85592 0.96891 0.92351 1.22415 1.00981 0.98107 1.00973 1.42793 1.61616 1.13518 1.21224 1.19029 1.22182 0.94491 1.01464 0.89186 1.24660 0.99788 0.96615 0.97986 1.69696 1.41336 1.08912 1.38171 0.86582 0.78803 0.77874 0.85468 1.21194 1.21796 1.20228 1.22372 0.81999 0.93545 1.02525 1.20790 0.90019 1.00908 0.99535 1.21432 1.01338 0.80058 1.04991 1.42768 1.08975 1.05764 1.44938 0.90765 0.89573 0.91644 0.80051 0.79448 0.90163 0.90267 0.89784 0.89527 0.93940 0.92247 0.93586 0.80663 0.93083 0.89775 0.90314 0.81932 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.30 36.01 0.37 0.06 16 2 C -0.07 -0.53 7.02 -81.54 -0.57 -1.11 16 3 C 0.03 0.31 11.75 -17.96 -0.21 0.10 16 4 N -0.48 -5.67 11.31 -12.80 -0.14 -5.82 16 5 C 0.21 2.38 7.79 -155.97 -1.22 1.16 16 6 C -0.07 -0.72 8.73 -38.60 -0.34 -1.06 16 7 C -0.11 -1.27 5.90 -104.62 -0.62 -1.89 16 8 C 0.57 8.27 7.81 -12.42 -0.10 8.18 16 9 O -0.53 -9.54 16.65 5.29 0.09 -9.45 16 10 N -0.61 -8.08 3.34 -174.55 -0.58 -8.66 16 11 C 0.08 0.80 4.89 -2.81 -0.01 0.79 16 12 C -0.12 -1.24 5.28 -24.90 -0.13 -1.37 16 13 C -0.11 -1.47 2.66 -88.47 -0.23 -1.70 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.19 3.28 2.43 -67.93 -0.16 3.11 16 16 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 17 C -0.16 -2.59 9.27 37.16 0.34 -2.24 16 18 N -0.75 -16.78 4.78 -53.43 -0.26 -17.04 16 19 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 23 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 27 C 0.12 1.80 6.26 -2.53 -0.02 1.79 16 28 C -0.09 -0.89 9.54 -39.54 -0.38 -1.27 16 29 C 0.04 0.35 10.80 -16.68 -0.18 0.17 16 30 N -0.35 -3.44 2.94 -58.54 -0.17 -3.62 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.23 8.12 -51.93 -0.42 -0.19 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.19 1.71 2.78 -56.69 -0.16 1.56 16 36 H 0.08 0.66 6.76 -51.93 -0.35 0.31 16 37 H 0.08 0.66 6.76 -51.93 -0.35 0.31 16 38 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 39 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.04 0.53 7.27 -51.93 -0.38 0.15 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.08 1.52 7.99 -51.93 -0.41 1.11 16 46 H 0.08 1.28 7.98 -51.92 -0.41 0.86 16 47 H 0.16 1.45 7.72 -52.48 -0.40 1.05 16 48 H 0.17 0.75 8.04 -52.48 -0.42 0.33 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -35.68 386.15 -9.82 -45.50 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.93 Total: 6.14 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.71 Total: -1.99 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -0.38 Total: -63.53 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.68 -9.82 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754792506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.673 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds