Wall clock time and date at job start Wed Apr 1 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35443 * 126.38923 * 2 1 4 4 N 1.33182 * 108.62316 * 180.02562 * 3 2 1 5 5 C 1.32652 * 109.12406 * 359.97438 * 4 3 2 6 6 C 1.40650 * 132.15340 * 180.02562 * 5 4 3 7 7 C 1.38438 * 119.09205 * 179.97438 * 6 5 4 8 8 C 1.47658 * 120.37293 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99475 * 187.89768 * 8 7 6 10 10 N 1.34770 * 119.99980 * 7.89787 * 8 7 6 11 11 C 1.47022 * 125.64720 * 354.92773 * 10 8 7 12 12 C 1.54329 * 107.39902 * 178.98326 * 11 10 8 13 13 C 1.55156 * 102.94066 * 337.72727 * 12 11 10 14 14 H 1.09007 * 111.00278 * 277.42714 * 13 12 11 15 15 C 1.53004 * 111.00328 * 153.62180 * 13 12 11 16 16 H 1.09006 * 109.46765 * 299.99617 * 15 13 12 17 17 C 1.52994 * 109.47598 * 59.99600 * 15 13 12 18 18 N 1.46497 * 109.47073 * 180.02562 * 15 13 12 19 19 C 1.36940 * 120.00063 * 154.99715 * 18 15 13 20 20 H 1.08000 * 119.99955 * 359.97438 * 19 18 15 21 21 C 1.38811 * 120.00172 * 179.97438 * 19 18 15 22 22 N 1.31616 * 120.00133 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00234 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46881 * 60.00125 * 23 21 19 25 25 H 1.48495 * 109.47380 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47309 * 300.00398 * 23 21 19 27 27 C 1.47740 * 125.81919 * 174.82240 * 10 8 7 28 28 C 1.41777 * 119.25250 * 0.27344 * 7 6 5 29 29 C 1.34540 * 120.14849 * 359.47177 * 28 7 6 30 30 N 1.36433 * 126.38917 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47401 * 90.02261 * 1 2 3 32 32 H 1.09002 * 109.46980 * 210.02654 * 1 2 3 33 33 H 1.09000 * 109.46611 * 330.02009 * 1 2 3 34 34 H 1.08000 * 125.69272 * 0.04269 * 3 2 1 35 35 H 1.08000 * 120.45577 * 359.94350 * 6 5 4 36 36 H 1.08997 * 109.88380 * 59.49047 * 11 10 8 37 37 H 1.08999 * 109.88200 * 298.47448 * 11 10 8 38 38 H 1.09001 * 110.72237 * 96.09399 * 12 11 10 39 39 H 1.09001 * 110.71798 * 219.19095 * 12 11 10 40 40 H 1.08994 * 109.47146 * 180.02562 * 17 15 13 41 41 H 1.09003 * 109.47030 * 300.00592 * 17 15 13 42 42 H 1.08998 * 109.47019 * 60.00488 * 17 15 13 43 43 H 0.96997 * 120.00360 * 334.99099 * 18 15 13 44 44 H 0.96996 * 120.00632 * 179.97438 * 22 21 19 45 45 H 1.09007 * 110.28520 * 85.26101 * 27 10 8 46 46 H 1.09000 * 110.46848 * 323.03170 * 27 10 8 47 47 H 1.08004 * 119.91944 * 179.72497 * 28 7 6 48 48 H 1.07998 * 119.51973 * 180.25450 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3106 1.0903 0.0000 4 7 3.5789 0.6839 -0.0006 5 6 3.6103 -0.6422 -0.0004 6 6 4.6751 -1.5612 -0.0003 7 6 4.3943 -2.9168 0.0005 8 6 5.4903 -3.9062 0.0012 9 8 5.2425 -5.0879 -0.1429 10 7 6.7652 -3.4996 0.1614 11 6 7.2154 -2.1022 0.2397 12 6 8.7442 -2.1210 0.4495 13 6 8.9958 -3.5311 1.0459 14 1 8.8073 -3.5405 2.1195 15 6 10.4152 -4.0119 0.7372 16 1 10.5559 -4.0590 -0.3427 17 6 11.4270 -3.0361 1.3412 18 7 10.6159 -5.3435 1.3139 19 6 11.5519 -6.1876 0.7784 20 1 12.1418 -5.8717 -0.0693 21 6 11.7425 -7.4492 1.3252 22 7 11.0240 -7.8340 2.3586 23 14 13.0188 -8.6008 0.5943 24 1 14.3601 -7.9685 0.6750 25 1 13.0271 -9.8767 1.3540 26 1 12.6844 -8.8725 -0.8268 27 6 7.9441 -4.3807 0.2900 28 6 3.0425 -3.3442 -0.0048 29 6 2.0475 -2.4388 0.0003 30 7 2.3165 -1.0983 -0.0005 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3632 0.8902 0.5135 34 1 1.9783 2.1179 0.0007 35 1 5.6978 -1.2140 -0.0013 36 1 6.7321 -1.6035 1.0799 37 1 6.9749 -1.5827 -0.6878 38 1 9.2654 -2.0056 -0.5009 39 1 9.0469 -1.3432 1.1506 40 1 12.4380 -3.3784 1.1209 41 1 11.2774 -2.0455 0.9118 42 1 11.2863 -2.9890 2.4211 43 1 10.0859 -5.6274 2.0751 44 1 11.1569 -8.7156 2.7404 45 1 8.3179 -4.6582 -0.6956 46 1 7.6927 -5.2723 0.8645 47 1 2.8112 -4.3992 -0.0087 48 1 1.0214 -2.7757 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754792507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:11 Heat of formation + Delta-G solvation = 89.958426 kcal Electronic energy + Delta-G solvation = -29291.458529 eV Core-core repulsion = 25348.854258 eV Total energy + Delta-G solvation = -3942.604271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.19922 -40.35540 -38.10790 -37.08580 -35.41631 -34.32061 -32.58256 -31.73464 -30.66621 -30.43839 -28.72711 -28.23460 -27.12152 -24.76219 -24.16306 -23.55154 -22.66176 -21.80072 -21.27159 -19.73408 -19.61158 -18.14613 -17.42493 -17.06889 -16.71422 -16.44658 -16.10052 -15.67761 -14.91745 -14.81988 -14.51350 -14.12909 -13.97805 -13.81870 -13.68538 -13.53283 -13.50067 -13.18113 -12.92209 -12.74645 -12.70251 -12.44859 -12.16384 -12.06604 -12.01507 -11.38550 -11.23239 -11.09560 -10.86329 -10.78235 -10.58605 -10.56008 -10.43526 -10.23062 -10.02600 -9.87682 -9.61902 -9.18275 -8.90137 -8.64213 -8.09200 -6.95869 -5.74794 -3.03965 0.15419 0.75621 2.19107 2.34310 2.74081 2.85089 3.40103 3.45453 3.50055 3.50935 3.76419 4.06877 4.22407 4.31462 4.50750 4.57421 4.60270 4.65068 4.77500 4.89332 4.92307 5.03592 5.07188 5.14501 5.21861 5.29899 5.34170 5.46202 5.54249 5.58834 5.67642 5.71471 5.86120 5.86961 5.91247 5.99138 6.04743 6.15164 6.22749 6.24974 6.32208 6.39048 6.51868 6.62126 6.66752 6.84823 7.06777 7.46214 7.48197 7.70923 8.07235 8.43215 9.54556 10.11081 10.45409 11.47608 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.002207 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.148421 B =12686.599121 C =13623.950690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.066 4.066 3 C 0.034 3.966 4 N -0.479 5.479 5 C 0.208 3.792 6 C -0.068 4.068 7 C -0.109 4.109 8 C 0.573 3.427 9 O -0.529 6.529 10 N -0.609 5.609 11 C 0.084 3.916 12 C -0.125 4.125 13 C -0.101 4.101 14 H 0.083 0.917 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.120 3.880 28 C -0.091 4.091 29 C 0.042 3.958 30 N -0.352 5.352 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.046 0.954 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.163 0.837 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.720 19.003 -4.588 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.181 4.181 3 C -0.120 4.120 4 N -0.198 5.198 5 C -0.033 4.033 6 C -0.088 4.088 7 C -0.118 4.118 8 C 0.361 3.639 9 O -0.406 6.406 10 N -0.342 5.342 11 C -0.039 4.039 12 C -0.164 4.164 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.074 3.926 16 H 0.068 0.932 17 C -0.224 4.224 18 N -0.365 5.365 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.001 4.001 28 C -0.112 4.112 29 C -0.079 4.079 30 N -0.024 5.024 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.199 0.801 35 H 0.205 0.795 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.181 0.819 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.156 18.715 -4.774 27.916 hybrid contribution -0.234 -1.231 -0.045 1.254 sum -20.390 17.484 -4.819 27.289 Atomic orbital electron populations 1.20201 0.86383 1.03611 1.02870 1.21355 0.94925 0.85304 1.16473 1.22367 0.87857 0.98701 1.03079 1.70667 1.21838 1.06023 1.21274 1.20782 0.83636 0.90973 1.07933 1.22350 1.00156 0.90250 0.96011 1.20025 0.94380 0.92766 1.04628 1.17504 0.81042 0.87640 0.77666 1.90834 1.82889 1.17164 1.49697 1.48546 1.06359 1.08361 1.70919 1.22598 0.96752 0.83419 1.01129 1.22749 0.92798 0.98383 1.02449 1.22684 0.96339 0.93093 1.00036 0.89870 1.20148 0.89184 0.86564 0.96655 0.93242 1.22445 1.01231 0.98018 1.00751 1.42412 1.45368 1.11051 1.37713 1.19151 1.12341 0.94660 1.10837 0.91264 1.24731 0.99945 0.97802 0.98377 1.69640 1.42917 1.20254 1.25174 0.86296 0.81309 0.80441 0.78292 1.21352 1.21764 1.21283 1.22409 0.82754 0.93610 1.01290 1.20798 0.90025 1.00921 0.99448 1.21429 1.01327 0.80052 1.05081 1.42766 1.08968 1.05764 1.44935 0.90810 0.91642 0.89595 0.80087 0.79495 0.90402 0.90431 0.90022 0.89633 0.92758 0.94295 0.93486 0.78267 0.93470 0.90706 0.89487 0.81908 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.30 36.01 0.37 0.04 16 2 C -0.07 -0.56 7.02 -81.54 -0.57 -1.14 16 3 C 0.03 0.32 11.75 -17.96 -0.21 0.11 16 4 N -0.48 -5.87 11.31 -12.80 -0.14 -6.02 16 5 C 0.21 2.48 7.79 -155.97 -1.22 1.26 16 6 C -0.07 -0.76 8.71 -38.60 -0.34 -1.09 16 7 C -0.11 -1.32 5.90 -104.63 -0.62 -1.94 16 8 C 0.57 8.66 7.81 -12.42 -0.10 8.56 16 9 O -0.53 -9.89 16.74 5.29 0.09 -9.81 16 10 N -0.61 -8.54 3.34 -173.73 -0.58 -9.12 16 11 C 0.08 0.87 4.87 -3.06 -0.01 0.85 16 12 C -0.13 -1.35 5.29 -24.89 -0.13 -1.48 16 13 C -0.10 -1.51 2.65 -88.47 -0.23 -1.74 16 14 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 15 C 0.18 3.36 2.43 -67.93 -0.16 3.19 16 16 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 17 C -0.16 -2.72 9.27 37.15 0.34 -2.37 16 18 N -0.72 -17.29 4.97 -53.43 -0.27 -17.55 16 19 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.12 1.97 6.23 -2.36 -0.01 1.95 16 28 C -0.09 -0.93 9.54 -39.54 -0.38 -1.31 16 29 C 0.04 0.36 10.80 -16.68 -0.18 0.18 16 30 N -0.35 -3.59 2.94 -58.55 -0.17 -3.76 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.19 1.82 2.82 -55.46 -0.16 1.67 16 36 H 0.08 0.72 6.69 -51.93 -0.35 0.37 16 37 H 0.08 0.68 6.79 -51.93 -0.35 0.33 16 38 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 39 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.51 7.28 -51.93 -0.38 0.13 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 46 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 47 H 0.16 1.53 7.72 -52.48 -0.41 1.13 16 48 H 0.17 0.82 8.04 -52.49 -0.42 0.40 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -34.58 389.45 -10.18 -44.76 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.97 Total: 7.51 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.70 Total: -1.97 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.44 Total: -63.71 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.58 -10.18 -44.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754792507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.719 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds