Wall clock time and date at job start Wed Apr 1 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35443 * 126.38994 * 2 1 4 4 N 1.33192 * 108.62211 * 179.97438 * 3 2 1 5 5 C 1.32659 * 109.12203 * 0.02562 * 4 3 2 6 6 C 1.40652 * 132.14500 * 180.31590 * 5 4 3 7 7 C 1.38436 * 119.08311 * 180.19645 * 6 5 4 8 8 C 1.47654 * 120.36878 * 179.73703 * 7 6 5 9 9 O 1.21579 * 119.99996 * 171.80695 * 8 7 6 10 10 N 1.34782 * 119.99956 * 351.80651 * 8 7 6 11 11 C 1.47024 * 125.64772 * 5.13762 * 10 8 7 12 12 C 1.54320 * 107.26884 * 181.11085 * 11 10 8 13 13 C 1.55155 * 102.94706 * 22.19136 * 12 11 10 14 14 H 1.08991 * 111.00466 * 82.60970 * 13 12 11 15 15 C 1.53007 * 111.00520 * 206.42987 * 13 12 11 16 16 H 1.08990 * 109.47077 * 55.16390 * 15 13 12 17 17 C 1.52999 * 109.46810 * 175.16410 * 15 13 12 18 18 N 1.46504 * 109.46653 * 295.15968 * 15 13 12 19 19 C 1.36939 * 119.99296 * 155.27891 * 18 15 13 20 20 H 1.08000 * 120.00015 * 359.72008 * 19 18 15 21 21 C 1.38813 * 119.99496 * 179.72472 * 19 18 15 22 22 N 1.31618 * 120.00017 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99905 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47358 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46978 * 120.00038 * 23 21 19 26 26 H 1.48500 * 109.47572 * 240.00127 * 23 21 19 27 27 C 1.47421 * 125.64715 * 185.19701 * 10 8 7 28 28 C 1.41770 * 119.25983 * 359.46151 * 7 6 5 29 29 C 1.34539 * 120.14656 * 0.27892 * 28 7 6 30 30 N 1.36442 * 126.38568 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46888 * 269.99662 * 1 2 3 32 32 H 1.08996 * 109.46905 * 29.99594 * 1 2 3 33 33 H 1.09000 * 109.47104 * 150.00017 * 1 2 3 34 34 H 1.07995 * 125.69377 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.45387 * 359.95474 * 6 5 4 36 36 H 1.08996 * 109.88387 * 61.68910 * 11 10 8 37 37 H 1.09000 * 109.87959 * 300.52522 * 11 10 8 38 38 H 1.09007 * 110.71606 * 263.82770 * 12 11 10 39 39 H 1.08997 * 110.87639 * 140.62777 * 12 11 10 40 40 H 1.08995 * 109.47324 * 64.94575 * 17 15 13 41 41 H 1.09000 * 109.46698 * 184.94672 * 17 15 13 42 42 H 1.08996 * 109.46962 * 304.94485 * 17 15 13 43 43 H 0.96995 * 120.00117 * 335.00441 * 18 15 13 44 44 H 0.97001 * 119.99930 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36971 * 36.98135 * 27 10 8 46 46 H 1.09007 * 110.36365 * 274.66185 * 27 10 8 47 47 H 1.08001 * 119.92999 * 180.29705 * 28 7 6 48 48 H 1.08001 * 119.52256 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0903 0.0000 4 7 3.5789 0.6839 0.0006 5 6 3.6103 -0.6424 0.0004 6 6 4.6752 -1.5612 0.0065 7 6 4.3943 -2.9168 0.0003 8 6 5.4903 -3.9062 0.0006 9 8 5.2426 -5.0877 0.1452 10 7 6.7653 -3.4996 -0.1594 11 6 7.2157 -2.1022 -0.2370 12 6 8.7441 -2.1247 -0.4491 13 6 8.9917 -3.5357 -1.0449 14 1 8.8023 -3.5453 -2.1181 15 6 10.4101 -4.0199 -0.7368 16 1 10.5802 -3.9851 0.3392 17 6 10.5772 -5.4575 -1.2332 18 7 11.3793 -3.1540 -1.4129 19 6 12.6537 -3.0409 -0.9246 20 1 12.9429 -3.5866 -0.0386 21 6 13.5737 -2.2249 -1.5685 22 7 13.2210 -1.5595 -2.6479 23 14 15.3119 -2.0700 -0.9021 24 1 15.4534 -2.9129 0.3124 25 1 16.2796 -2.5226 -1.9337 26 1 15.5848 -0.6520 -0.5556 27 6 7.9390 -4.3825 -0.2868 28 6 3.0426 -3.3444 -0.0005 29 6 2.0475 -2.4389 -0.0009 30 7 2.3164 -1.0984 -0.0005 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9783 2.1179 0.0004 35 1 5.6978 -1.2140 0.0120 36 1 6.9778 -1.5839 0.6918 37 1 6.7322 -1.6031 -1.0768 38 1 9.2668 -2.0098 0.5006 39 1 9.0501 -1.3501 -1.1522 40 1 10.4941 -5.4786 -2.3198 41 1 11.5566 -5.8327 -0.9364 42 1 9.8002 -6.0851 -0.7971 43 1 11.1194 -2.6639 -2.2086 44 1 13.8640 -0.9895 -3.0980 45 1 7.6835 -5.2729 -0.8611 46 1 8.3136 -4.6601 0.6985 47 1 2.8111 -4.3993 -0.0005 48 1 1.0214 -2.7758 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754792508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:14 Heat of formation + Delta-G solvation = 88.974712 kcal Electronic energy + Delta-G solvation = -29241.579278 eV Core-core repulsion = 25298.932350 eV Total energy + Delta-G solvation = -3942.646928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.20033 -40.43867 -38.13203 -37.12953 -35.44341 -34.33885 -32.55841 -31.73277 -30.68741 -30.45007 -29.24017 -27.69914 -27.11253 -25.05208 -24.15046 -23.48625 -22.63715 -21.79407 -21.23684 -19.77916 -19.67698 -18.17280 -17.44948 -17.08077 -16.77389 -16.46242 -16.15524 -15.74631 -15.01802 -14.84584 -14.41361 -14.11638 -13.97009 -13.83707 -13.57189 -13.52997 -13.44099 -13.20068 -13.14941 -12.75548 -12.66511 -12.49077 -12.24117 -12.07569 -12.03217 -11.50445 -11.20380 -11.11607 -10.90728 -10.74245 -10.61168 -10.45500 -10.33943 -10.19540 -10.12693 -9.86212 -9.65597 -9.18944 -8.93526 -8.74699 -8.10065 -6.98129 -5.78380 -3.06898 0.13404 0.73671 2.18403 2.31102 2.71066 2.77423 3.35686 3.42290 3.48498 3.50294 3.75429 4.05374 4.21157 4.29016 4.54980 4.55319 4.59987 4.67991 4.78317 4.90898 5.00553 5.03714 5.06715 5.14167 5.21844 5.28825 5.35881 5.43827 5.51406 5.60306 5.65620 5.67551 5.83265 5.83533 5.93214 6.01248 6.02878 6.16305 6.18249 6.25790 6.35062 6.41615 6.55085 6.61057 6.66395 6.84839 7.07604 7.35431 7.49508 7.69670 7.95672 8.40029 9.51741 10.08339 10.43228 11.44216 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018185 B = 0.002249 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.337313 B =12446.396319 C =13736.029870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.065 4.065 3 C 0.035 3.965 4 N -0.475 5.475 5 C 0.207 3.793 6 C -0.062 4.062 7 C -0.115 4.115 8 C 0.576 3.424 9 O -0.537 6.537 10 N -0.606 5.606 11 C 0.081 3.919 12 C -0.117 4.117 13 C -0.103 4.103 14 H 0.083 0.917 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.168 4.168 18 N -0.722 5.722 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.115 3.885 28 C -0.092 4.092 29 C 0.042 3.958 30 N -0.352 5.352 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.162 0.838 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.193 0.892 5.483 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.180 4.180 3 C -0.119 4.119 4 N -0.194 5.194 5 C -0.034 4.034 6 C -0.082 4.082 7 C -0.124 4.124 8 C 0.365 3.635 9 O -0.415 6.415 10 N -0.339 5.339 11 C -0.041 4.041 12 C -0.155 4.155 13 C -0.123 4.123 14 H 0.101 0.899 15 C 0.075 3.925 16 H 0.068 0.932 17 C -0.228 4.228 18 N -0.363 5.363 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.007 4.007 28 C -0.113 4.113 29 C -0.079 4.079 30 N -0.025 5.025 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.200 0.800 35 H 0.206 0.794 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.180 0.820 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -26.582 0.738 5.678 27.191 hybrid contribution 0.161 -0.161 -0.036 0.230 sum -26.421 0.577 5.642 27.023 Atomic orbital electron populations 1.20199 0.86357 1.03612 1.02872 1.21363 0.94918 0.85304 1.16402 1.22396 0.87826 0.98755 1.02929 1.70700 1.21834 1.06018 1.20879 1.20789 0.83605 0.90999 1.08044 1.22414 1.00317 0.90273 0.95219 1.19948 0.94281 0.92724 1.05411 1.17511 0.81052 0.87596 0.77329 1.90790 1.83084 1.17252 1.50408 1.48446 1.06053 1.08656 1.70695 1.22714 0.97534 0.82687 1.01211 1.22647 0.91325 0.98434 1.03109 1.22685 0.95578 0.94083 0.99914 0.89900 1.20130 0.86251 0.89830 0.96282 0.93197 1.22506 1.00571 0.98671 1.01088 1.42374 1.08722 1.52747 1.32455 1.19256 0.87568 1.21914 1.07941 0.91167 1.24721 0.98286 1.00061 0.97884 1.69662 1.34437 1.33350 1.20617 0.86157 0.85006 0.77315 0.77941 1.20600 1.21976 1.21908 1.22399 0.83858 0.93552 1.00917 1.20747 0.90000 1.00780 0.99727 1.21415 1.01286 0.80107 1.05104 1.42775 1.08974 1.05749 1.44988 0.90800 0.89562 0.91668 0.80024 0.79358 0.90330 0.90280 0.89893 0.89017 0.93292 0.92858 0.94335 0.78267 0.93593 0.90192 0.90828 0.82033 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.30 36.01 0.37 0.04 16 2 C -0.07 -0.56 7.02 -81.54 -0.57 -1.14 16 3 C 0.03 0.34 11.75 -17.96 -0.21 0.13 16 4 N -0.48 -6.12 11.31 -12.80 -0.14 -6.26 16 5 C 0.21 2.52 7.79 -155.96 -1.22 1.31 16 6 C -0.06 -0.71 8.70 -38.60 -0.34 -1.04 16 7 C -0.11 -1.33 5.90 -104.63 -0.62 -1.94 16 8 C 0.58 7.91 7.80 -12.41 -0.10 7.81 16 9 O -0.54 -8.80 16.72 5.30 0.09 -8.71 16 10 N -0.61 -7.88 3.33 -173.81 -0.58 -8.46 16 11 C 0.08 0.92 4.88 -3.07 -0.01 0.90 16 12 C -0.12 -1.60 6.21 -24.90 -0.15 -1.76 16 13 C -0.10 -1.52 2.64 -88.47 -0.23 -1.75 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C 0.19 3.37 2.40 -67.92 -0.16 3.20 16 16 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 17 C -0.17 -2.89 9.38 37.16 0.35 -2.54 16 18 N -0.72 -16.79 4.91 -53.42 -0.26 -17.06 16 19 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 23 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C 0.11 1.56 5.36 -2.53 -0.01 1.55 16 28 C -0.09 -0.87 9.54 -39.54 -0.38 -1.24 16 29 C 0.04 0.34 10.80 -16.68 -0.18 0.16 16 30 N -0.35 -3.58 2.94 -58.54 -0.17 -3.75 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.24 8.12 -51.93 -0.42 -0.18 16 34 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.19 1.97 2.83 -55.24 -0.16 1.82 16 36 H 0.08 0.78 6.79 -51.93 -0.35 0.43 16 37 H 0.08 0.83 6.70 -51.93 -0.35 0.48 16 38 H 0.08 1.19 8.03 -51.92 -0.42 0.77 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.56 7.09 -51.93 -0.37 0.19 16 43 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.08 1.11 7.88 -51.93 -0.41 0.71 16 46 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 47 H 0.16 1.34 7.72 -52.49 -0.41 0.94 16 48 H 0.17 0.74 8.04 -52.49 -0.42 0.31 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -33.47 389.21 -10.18 -43.65 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.96 Total: 7.55 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.71 Total: -3.18 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.43 Total: -62.12 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.47 -10.18 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754792508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.620 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds