Wall clock time and date at job start Wed Apr 1 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35443 * 126.39186 * 2 1 4 4 N 1.33185 * 108.62231 * 180.02562 * 3 2 1 5 5 C 1.32651 * 109.12745 * 359.97438 * 4 3 2 6 6 C 1.40654 * 132.15422 * 180.02562 * 5 4 3 7 7 C 1.38440 * 119.08693 * 179.97438 * 6 5 4 8 8 C 1.47654 * 120.36745 * 180.02562 * 7 6 5 9 9 O 1.21585 * 119.99874 * 172.89321 * 8 7 6 10 10 N 1.34768 * 120.00291 * 352.89168 * 8 7 6 11 11 C 1.47028 * 125.64813 * 5.73284 * 10 8 7 12 12 C 1.54325 * 107.27131 * 178.90287 * 11 10 8 13 13 C 1.55162 * 102.94381 * 337.80553 * 12 11 10 14 14 H 1.08992 * 111.03463 * 277.41399 * 13 12 11 15 15 C 1.52992 * 111.00394 * 153.57445 * 13 12 11 16 16 H 1.09001 * 109.47730 * 312.46233 * 15 13 12 17 17 C 1.52995 * 109.47494 * 192.45751 * 15 13 12 18 18 N 1.46505 * 109.47001 * 72.45732 * 15 13 12 19 19 C 1.36939 * 119.99943 * 204.99355 * 18 15 13 20 20 H 1.08001 * 119.99847 * 0.02562 * 19 18 15 21 21 C 1.38811 * 119.99984 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00441 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99724 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47096 * 89.99872 * 23 21 19 25 25 H 1.48507 * 109.46760 * 209.99656 * 23 21 19 26 26 H 1.48494 * 109.47311 * 329.99508 * 23 21 19 27 27 C 1.47424 * 125.65186 * 185.68899 * 10 8 7 28 28 C 1.41773 * 119.25810 * 0.27537 * 7 6 5 29 29 C 1.34542 * 120.14710 * 359.47276 * 28 7 6 30 30 N 1.36442 * 126.38771 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47056 * 90.02620 * 1 2 3 32 32 H 1.08998 * 109.47500 * 210.02296 * 1 2 3 33 33 H 1.08996 * 109.47016 * 330.02836 * 1 2 3 34 34 H 1.07997 * 125.69201 * 0.03821 * 3 2 1 35 35 H 1.08000 * 120.45416 * 359.93810 * 6 5 4 36 36 H 1.08999 * 109.88028 * 298.32046 * 11 10 8 37 37 H 1.08998 * 109.88346 * 59.48440 * 11 10 8 38 38 H 1.08998 * 110.71878 * 219.44369 * 12 11 10 39 39 H 1.09000 * 110.71630 * 96.16789 * 12 11 10 40 40 H 1.08997 * 109.47938 * 175.09268 * 17 15 13 41 41 H 1.09008 * 109.46762 * 55.09302 * 17 15 13 42 42 H 1.09004 * 109.46985 * 295.10210 * 17 15 13 43 43 H 0.96998 * 120.00110 * 25.00567 * 18 15 13 44 44 H 0.96995 * 120.00153 * 179.97438 * 22 21 19 45 45 H 1.08995 * 110.36868 * 85.32371 * 27 10 8 46 46 H 1.09009 * 110.45651 * 323.04691 * 27 10 8 47 47 H 1.08008 * 119.92575 * 179.72293 * 28 7 6 48 48 H 1.07999 * 119.52053 * 180.26097 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0903 0.0000 4 7 3.5789 0.6838 -0.0006 5 6 3.6103 -0.6423 -0.0004 6 6 4.6751 -1.5613 -0.0003 7 6 4.3942 -2.9169 0.0005 8 6 5.4901 -3.9064 0.0012 9 8 5.2411 -5.0892 0.1321 10 7 6.7664 -3.4984 -0.1434 11 6 7.2190 -2.1004 -0.1911 12 6 8.7551 -2.1208 -0.3381 13 6 9.1375 -3.5236 0.2036 14 1 9.2011 -3.5188 1.2916 15 6 10.4473 -4.0129 -0.4174 16 1 10.4147 -3.8663 -1.4971 17 6 10.6333 -5.5000 -0.1100 18 7 11.5675 -3.2542 0.1446 19 6 12.7300 -3.1215 -0.5669 20 1 12.8209 -3.5758 -1.5425 21 6 13.7912 -2.4023 -0.0346 22 7 14.9085 -2.2743 -0.7185 23 14 13.6337 -1.6159 1.6525 24 1 14.0875 -2.5761 2.6905 25 1 14.4737 -0.3925 1.7088 26 1 12.2149 -1.2540 1.8995 27 6 7.9402 -4.3801 -0.2789 28 6 3.0424 -3.3444 -0.0048 29 6 2.0474 -2.4389 0.0002 30 7 2.3164 -1.0984 -0.0005 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 1.9783 2.1179 0.0006 35 1 5.6978 -1.2142 -0.0014 36 1 6.7714 -1.5949 -1.0468 37 1 6.9415 -1.5892 0.7308 38 1 9.2107 -1.3366 0.2665 39 1 9.0437 -2.0195 -1.3843 40 1 11.5204 -5.8693 -0.6245 41 1 9.7585 -6.0537 -0.4512 42 1 10.7532 -5.6366 0.9648 43 1 11.4858 -2.8460 1.0207 44 1 15.6498 -1.7714 -0.3467 45 1 8.0775 -4.6716 -1.3201 46 1 7.8279 -5.2633 0.3500 47 1 2.8109 -4.3993 -0.0088 48 1 1.0213 -2.7758 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754792509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:18 Heat of formation + Delta-G solvation = 94.077744 kcal Electronic energy + Delta-G solvation = -29303.242793 eV Core-core repulsion = 25360.817149 eV Total energy + Delta-G solvation = -3942.425644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.25315 -40.52747 -38.24381 -37.19276 -35.61173 -34.40738 -32.58518 -31.78356 -30.85845 -30.53975 -29.68646 -27.87731 -27.17791 -25.15127 -24.16441 -23.41204 -22.67162 -21.74884 -21.24259 -19.93370 -19.81495 -18.26749 -17.61941 -17.39812 -16.84925 -16.52388 -16.22391 -15.68383 -15.19071 -14.98990 -14.43198 -14.24666 -14.01520 -13.85780 -13.67187 -13.58095 -13.51057 -13.27134 -13.12206 -12.82455 -12.73039 -12.52684 -12.42528 -12.15243 -12.12902 -11.79474 -11.39962 -11.20624 -11.00841 -10.87741 -10.61315 -10.52230 -10.44580 -10.24986 -10.19136 -9.96252 -9.60224 -9.24121 -8.95773 -8.82455 -8.15343 -7.29969 -5.78393 -3.14235 0.07496 0.68513 2.13335 2.25686 2.65440 2.69412 3.29820 3.35360 3.38721 3.44683 3.69426 3.99797 4.16425 4.21754 4.47104 4.54420 4.57298 4.59440 4.65112 4.82472 4.87385 4.98617 5.00583 5.06279 5.10503 5.22798 5.27845 5.37694 5.43196 5.52721 5.55387 5.60771 5.63539 5.73816 5.79395 5.86944 5.96166 6.06834 6.07633 6.17194 6.20630 6.31835 6.36321 6.44755 6.61240 6.76409 6.97910 7.27211 7.44200 7.88700 7.97363 8.40415 9.18647 9.91099 10.10510 11.39880 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002371 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.003465 B =11805.682078 C =13044.641669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.064 4.064 3 C 0.035 3.965 4 N -0.476 5.476 5 C 0.206 3.794 6 C -0.063 4.063 7 C -0.114 4.114 8 C 0.577 3.423 9 O -0.535 6.535 10 N -0.607 5.607 11 C 0.081 3.919 12 C -0.121 4.121 13 C -0.107 4.107 14 H 0.082 0.918 15 C 0.191 3.809 16 H 0.059 0.941 17 C -0.169 4.169 18 N -0.746 5.746 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.115 3.885 28 C -0.092 4.092 29 C 0.043 3.957 30 N -0.352 5.352 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.047 0.953 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.163 0.837 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.183 2.434 1.489 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.179 4.179 3 C -0.119 4.119 4 N -0.195 5.195 5 C -0.035 4.035 6 C -0.083 4.083 7 C -0.123 4.123 8 C 0.366 3.634 9 O -0.413 6.413 10 N -0.340 5.340 11 C -0.041 4.041 12 C -0.159 4.159 13 C -0.127 4.127 14 H 0.101 0.899 15 C 0.081 3.919 16 H 0.077 0.923 17 C -0.229 4.229 18 N -0.389 5.389 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.007 4.007 28 C -0.113 4.113 29 C -0.078 4.078 30 N -0.025 5.025 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.200 0.800 35 H 0.206 0.794 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.180 0.820 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -30.550 2.276 1.374 30.666 hybrid contribution -0.707 0.186 1.263 1.459 sum -31.257 2.463 2.637 31.464 Atomic orbital electron populations 1.20203 0.86327 1.03625 1.02918 1.21371 0.94936 0.85290 1.16301 1.22398 0.87810 0.98771 1.02919 1.70689 1.21866 1.06020 1.20903 1.20784 0.83614 0.90998 1.08081 1.22422 1.00314 0.90285 0.95318 1.19947 0.94283 0.92700 1.05418 1.17507 0.81056 0.87636 0.77205 1.90797 1.83040 1.17151 1.50346 1.48422 1.06008 1.08533 1.71028 1.22696 0.97187 0.82827 1.01409 1.22711 0.91303 0.98354 1.03540 1.22724 0.94726 0.94200 1.01033 0.89939 1.20102 0.84745 0.90306 0.96750 0.92292 1.22492 1.00681 0.98365 1.01389 1.42748 1.12968 1.63217 1.19968 1.19041 0.89165 1.27897 1.00992 0.89207 1.24667 0.96011 1.00528 0.97940 1.69694 1.04380 1.46069 1.37998 0.86564 0.77132 0.79209 0.85653 1.21215 1.21840 1.20312 1.22399 0.82785 0.93652 1.01908 1.20753 0.89984 1.00805 0.99748 1.21425 1.01314 0.80097 1.04999 1.42778 1.08972 1.05759 1.44983 0.90756 0.91654 0.89546 0.80005 0.79371 0.90160 0.90288 0.89351 0.89574 0.92344 0.93952 0.93374 0.80679 0.93073 0.90604 0.89886 0.82000 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.30 36.00 0.37 0.07 16 2 C -0.06 -0.53 7.02 -81.54 -0.57 -1.10 16 3 C 0.03 0.33 11.75 -17.96 -0.21 0.12 16 4 N -0.48 -5.89 11.31 -12.80 -0.14 -6.03 16 5 C 0.21 2.41 7.79 -155.96 -1.22 1.20 16 6 C -0.06 -0.68 8.73 -38.60 -0.34 -1.02 16 7 C -0.11 -1.26 5.90 -104.63 -0.62 -1.88 16 8 C 0.58 7.56 7.81 -12.42 -0.10 7.46 16 9 O -0.54 -8.48 16.65 5.29 0.09 -8.39 16 10 N -0.61 -7.44 3.33 -174.52 -0.58 -8.02 16 11 C 0.08 0.85 4.87 -3.06 -0.01 0.83 16 12 C -0.12 -1.51 6.36 -24.89 -0.16 -1.67 16 13 C -0.11 -1.48 2.69 -88.47 -0.24 -1.72 16 14 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 15 C 0.19 3.30 2.48 -67.93 -0.17 3.13 16 16 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 17 C -0.17 -2.77 9.31 37.16 0.35 -2.43 16 18 N -0.75 -16.34 4.87 -53.43 -0.26 -16.60 16 19 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 20 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 23 Si 0.88 21.54 27.74 -169.99 -4.71 16.82 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 27 C 0.11 1.47 5.05 -2.53 -0.01 1.45 16 28 C -0.09 -0.83 9.54 -39.54 -0.38 -1.20 16 29 C 0.04 0.33 10.80 -16.68 -0.18 0.15 16 30 N -0.35 -3.42 2.94 -58.55 -0.17 -3.59 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.22 8.12 -51.93 -0.42 -0.20 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.19 1.84 2.80 -56.15 -0.16 1.68 16 36 H 0.08 0.74 6.75 -51.93 -0.35 0.39 16 37 H 0.08 0.74 6.75 -51.93 -0.35 0.39 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.58 6.85 -51.92 -0.36 0.22 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.36 7.82 5.66 -40.82 -0.23 7.58 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 46 H 0.08 1.11 7.79 -51.92 -0.40 0.70 16 47 H 0.16 1.27 7.72 -52.48 -0.41 0.87 16 48 H 0.17 0.67 8.04 -52.49 -0.42 0.25 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -34.66 385.47 -9.82 -44.49 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.89 Total: 6.71 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.74 Total: -3.22 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.38 Total: -62.22 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.66 -9.82 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754792509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.567 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds