Wall clock time and date at job start Wed Apr 1 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33236 * 125.52728 * 2 1 4 4 C 1.30830 * 109.83110 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.96313 * 179.97438 * 4 3 2 6 6 N 1.34427 * 108.07751 * 0.02562 * 4 3 2 7 7 C 1.46498 * 126.82536 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47213 * 90.00131 * 7 6 4 9 9 C 1.52998 * 109.47431 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47638 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99373 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00027 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99848 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47063 * 179.97438 * 13 12 10 15 15 C 1.38637 * 119.74624 * 269.72684 * 14 13 12 16 16 C 1.37623 * 120.24197 * 179.72268 * 15 14 13 17 17 C 1.40715 * 119.74587 * 0.57306 * 16 15 14 18 18 C 1.41391 * 120.24437 * 179.68124 * 17 16 15 19 19 H 1.08002 * 119.99862 * 204.40630 * 18 17 16 20 20 C 1.39950 * 119.99780 * 24.40781 * 18 17 16 21 21 N 1.30821 * 120.00086 * 17.84862 * 20 18 17 22 22 Si 1.86804 * 119.99600 * 197.84529 * 20 18 17 23 23 H 1.48506 * 109.46883 * 90.00306 * 22 20 18 24 24 H 1.48504 * 109.47147 * 209.99697 * 22 20 18 25 25 H 1.48497 * 109.47321 * 330.00115 * 22 20 18 26 26 C 1.40721 * 119.51049 * 359.70526 * 17 16 15 27 27 C 1.37618 * 119.74494 * 359.97438 * 26 17 16 28 28 N 1.30715 * 125.52628 * 180.28913 * 2 1 3 29 29 H 1.09000 * 109.47368 * 90.02643 * 1 2 3 30 30 H 1.09003 * 109.47012 * 210.02384 * 1 2 3 31 31 H 1.09000 * 109.47190 * 330.01969 * 1 2 3 32 32 H 1.09004 * 109.47473 * 270.03860 * 5 4 3 33 33 H 1.09000 * 109.47593 * 30.03981 * 5 4 3 34 34 H 1.09001 * 109.47309 * 150.04452 * 5 4 3 35 35 H 1.09003 * 109.47100 * 329.99929 * 7 6 4 36 36 H 1.09008 * 109.47414 * 209.99606 * 7 6 4 37 37 H 1.09003 * 109.47252 * 59.99892 * 8 7 6 38 38 H 1.09001 * 109.47320 * 300.00208 * 8 7 6 39 39 H 1.09005 * 109.47580 * 300.00299 * 9 8 7 40 40 H 1.09003 * 109.46935 * 59.99766 * 9 8 7 41 41 H 0.96997 * 120.00509 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.46860 * 300.00443 * 13 12 10 43 43 H 1.09003 * 109.46954 * 59.99989 * 13 12 10 44 44 H 1.08001 * 119.87783 * 359.97438 * 15 14 13 45 45 H 1.07996 * 120.12540 * 180.27811 * 16 15 14 46 46 H 0.97001 * 119.99537 * 179.97438 * 21 20 18 47 47 H 1.07996 * 120.12240 * 179.97438 * 26 17 16 48 48 H 1.08002 * 119.87482 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0843 0.0000 4 6 3.5407 0.7304 0.0006 5 6 4.7227 1.6652 0.0002 6 7 3.5966 -0.6127 0.0003 7 6 4.8047 -1.4413 0.0003 8 6 5.2252 -1.7300 1.4427 9 6 6.4866 -2.5959 1.4427 10 6 6.9012 -2.8798 2.8635 11 8 6.2520 -2.4331 3.7853 12 7 7.9940 -3.6292 3.1096 13 6 8.3974 -3.9047 4.4908 14 6 9.6398 -4.7577 4.4907 15 6 9.5255 -6.1393 4.4974 16 6 10.6533 -6.9281 4.4916 17 6 11.9256 -6.3271 4.4910 18 6 13.0913 -7.1274 4.4919 19 1 14.0185 -6.7304 4.8780 20 6 13.0434 -8.4338 3.9924 21 7 12.0544 -8.8029 3.2196 22 14 14.3919 -9.6506 4.4291 23 1 14.0204 -10.3767 5.6702 24 1 14.5603 -10.6223 3.3188 25 1 15.6666 -8.9203 4.6455 26 6 12.0293 -4.9237 4.4901 27 6 10.8881 -4.1547 4.4892 28 7 2.2665 -1.0638 -0.0054 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 5.0075 1.8905 -1.0276 33 1 4.4557 2.5887 0.5139 34 1 5.5599 1.1926 0.5139 35 1 5.6078 -0.9128 -0.5135 36 1 4.6010 -2.3808 -0.5137 37 1 4.4222 -2.2586 1.9564 38 1 5.4289 -0.7907 1.9567 39 1 6.2826 -3.5353 0.9288 40 1 7.2898 -2.0678 0.9288 41 1 8.5139 -3.9856 2.3723 42 1 8.6014 -2.9649 5.0040 43 1 7.5945 -4.4328 5.0053 44 1 8.5479 -6.5983 4.5031 45 1 10.5621 -8.0042 4.4923 46 1 12.0215 -9.7083 2.8732 47 1 13.0009 -4.4521 4.4901 48 1 10.9652 -3.0775 4.4881 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519715708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:48 Heat of formation + Delta-G solvation = 43.044522 kcal Electronic energy + Delta-G solvation = -27458.325450 eV Core-core repulsion = 23513.686840 eV Total energy + Delta-G solvation = -3944.638610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37050 -39.59590 -37.76721 -36.07184 -34.77550 -33.49119 -33.37740 -32.48686 -30.52864 -29.81970 -29.42309 -28.66249 -27.22437 -26.01151 -23.82903 -22.47453 -21.14013 -20.95877 -20.72276 -20.22479 -20.05082 -17.47188 -17.44296 -16.62224 -16.18418 -16.05488 -15.66371 -15.37209 -14.84805 -14.60813 -14.27005 -13.98825 -13.91208 -13.75589 -13.62999 -13.47017 -13.16163 -13.05678 -12.78549 -12.59865 -12.53845 -12.40008 -12.10194 -12.07247 -11.92989 -11.79638 -11.71008 -11.22272 -11.14337 -11.09987 -10.77284 -10.50981 -10.20897 -9.95964 -9.87330 -9.68586 -9.55252 -9.52705 -9.27788 -8.72954 -7.63484 -7.51293 -6.92548 -4.52169 1.34242 1.99931 2.51853 2.63792 2.78635 2.92138 2.97702 3.01409 3.02233 3.58811 3.74354 3.81195 4.07288 4.36662 4.42505 4.56449 4.57862 4.65507 4.90184 4.97094 4.99831 5.02474 5.13200 5.26599 5.33160 5.37443 5.48544 5.52136 5.53971 5.68981 5.76858 5.84738 5.91228 6.09442 6.17248 6.23126 6.24871 6.28649 6.56773 6.75749 6.81006 6.92310 7.12256 7.20617 7.45220 7.63130 7.84835 7.89113 7.90117 7.95486 8.13566 8.42451 8.48383 8.73245 8.80742 10.01437 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.001500 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.093661 B =18668.085148 C =18910.684179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.218 3.782 3 N -0.546 5.546 4 C 0.279 3.721 5 C -0.079 4.079 6 N -0.374 5.374 7 C 0.126 3.874 8 C -0.118 4.118 9 C -0.139 4.139 10 C 0.505 3.495 11 O -0.554 6.554 12 N -0.717 5.717 13 C 0.184 3.816 14 C -0.247 4.247 15 C -0.082 4.082 16 C -0.169 4.169 17 C 0.116 3.884 18 C -0.458 4.458 19 H 0.080 0.920 20 C 0.076 3.924 21 N -0.787 5.787 22 Si 0.910 3.090 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.230 4.230 27 C -0.070 4.070 28 N -0.318 5.318 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.402 0.598 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.282 0.718 47 H 0.093 0.907 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 12.927 -9.435 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 N -0.275 5.275 4 C 0.003 3.997 5 C -0.138 4.138 6 N -0.165 5.165 7 C 0.004 3.996 8 C -0.157 4.157 9 C -0.180 4.180 10 C 0.291 3.709 11 O -0.432 6.432 12 N -0.368 5.368 13 C 0.062 3.938 14 C -0.249 4.249 15 C -0.101 4.101 16 C -0.188 4.188 17 C 0.113 3.887 18 C -0.487 4.487 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.412 5.412 22 Si 0.734 3.266 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.249 4.249 27 C -0.089 4.089 28 N -0.147 5.147 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.236 0.764 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.111 0.889 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.283 12.576 -8.915 20.349 hybrid contribution 1.223 -0.942 -0.266 1.566 sum -12.061 11.635 -9.181 19.108 Atomic orbital electron populations 1.20075 0.83984 1.04021 1.03571 1.24269 0.98248 0.85769 0.98145 1.70344 0.99878 1.31006 1.26275 1.24357 0.95304 0.83935 0.96142 1.20420 0.91421 0.97593 1.04408 1.50322 1.05926 1.05493 1.54712 1.21904 0.82503 0.96205 0.98996 1.21682 0.97890 1.01517 0.94621 1.21576 0.98647 1.02125 0.95677 1.20513 0.80796 0.78599 0.90994 1.90691 1.53886 1.52152 1.46508 1.46554 1.27801 1.52051 1.10348 1.19951 0.94754 0.97800 0.81262 1.18981 0.92441 0.93309 1.20129 1.20563 0.97112 0.92721 0.99662 1.21315 0.91548 0.99485 1.06452 1.17678 0.93134 0.91092 0.86755 1.19680 0.96851 0.96638 1.35513 0.90220 1.25954 0.96793 0.99072 0.92479 1.69813 1.29941 1.19607 1.21831 0.86283 0.81367 0.79808 0.79155 1.19138 1.20211 1.18505 1.20976 0.96166 0.94031 1.13756 1.20397 0.92465 0.96983 0.99024 1.78032 0.86771 1.22624 1.27255 0.89988 0.90033 0.89642 0.89065 0.88379 0.89699 0.88221 0.88111 0.90056 0.90479 0.88449 0.88531 0.76387 0.92457 0.92426 0.89422 0.86366 0.90662 0.88883 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.22 2.62 8.14 -156.86 -1.28 1.34 16 3 N -0.55 -6.77 11.19 -8.16 -0.09 -6.86 16 4 C 0.28 2.89 7.98 -155.70 -1.24 1.65 16 5 C -0.08 -0.46 10.01 36.00 0.36 -0.10 16 6 N -0.37 -4.03 3.64 -58.34 -0.21 -4.25 16 7 C 0.13 0.94 6.13 -4.04 -0.02 0.92 16 8 C -0.12 -1.11 4.83 -26.73 -0.13 -1.24 16 9 C -0.14 -1.22 5.70 -27.88 -0.16 -1.38 16 10 C 0.51 7.05 7.83 -10.99 -0.09 6.97 16 11 O -0.55 -9.97 15.98 5.56 0.09 -9.88 16 12 N -0.72 -10.46 5.55 -61.47 -0.34 -10.80 16 13 C 0.18 3.19 5.79 -5.19 -0.03 3.16 16 14 C -0.25 -4.92 5.27 -104.33 -0.55 -5.47 16 15 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 16 C -0.17 -4.11 8.70 -38.87 -0.34 -4.45 16 17 C 0.12 2.91 5.57 -106.82 -0.60 2.32 16 18 C -0.46 -11.50 9.05 -37.74 -0.34 -11.84 16 19 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.19 10.95 55.55 0.61 -18.59 16 22 Si 0.91 17.70 29.60 -169.99 -5.03 12.67 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 26 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 27 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 28 N -0.32 -4.13 12.70 32.42 0.41 -3.72 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.38 7.76 -51.93 -0.40 -0.03 16 35 H 0.10 0.44 7.72 -51.93 -0.40 0.04 16 36 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.40 5.31 8.46 -40.82 -0.35 4.97 16 42 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 46 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 47 H 0.09 2.02 8.06 -52.49 -0.42 1.59 16 48 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 408.67 15.07 6.16 6.16 Total: -1.00 -32.05 408.67 -11.03 -43.08 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.35 Total: 8.27 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -5.27 Total: -16.09 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.38 Total: -44.21 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.05 -11.03 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519715708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.126 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds