Wall clock time and date at job start Wed Apr 1 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30183 * 125.08887 * 2 1 4 4 C 1.34890 * 109.73030 * 180.12642 * 3 2 1 5 5 C 1.46283 * 126.49608 * 179.85909 * 4 3 2 6 6 O 1.21777 * 120.00187 * 179.69335 * 5 4 3 7 7 N 1.34780 * 120.00120 * 359.68831 * 5 4 3 8 8 C 1.46495 * 120.00440 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47442 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47138 * 180.02562 * 9 8 7 11 11 H 1.09000 * 110.88826 * 57.42335 * 10 9 8 12 12 C 1.55159 * 111.03830 * 181.32899 * 10 9 8 13 13 C 1.54318 * 102.94169 * 153.58739 * 12 10 9 14 14 N 1.47292 * 107.31103 * 337.81949 * 13 12 10 15 15 C 1.36935 * 125.79485 * 178.92456 * 14 13 12 16 16 H 1.08000 * 119.99782 * 174.82802 * 15 14 13 17 17 C 1.38813 * 119.99748 * 354.82496 * 15 14 13 18 18 N 1.31620 * 120.00341 * 7.02995 * 17 15 14 19 19 Si 1.86808 * 119.99539 * 187.02565 * 17 15 14 20 20 H 1.48502 * 109.46896 * 94.99260 * 19 17 15 21 21 H 1.48501 * 109.46951 * 214.98619 * 19 17 15 22 22 H 1.48492 * 109.47136 * 334.98799 * 19 17 15 23 23 C 1.47424 * 108.55382 * 358.92245 * 14 13 12 24 24 C 1.40143 * 107.00816 * 359.59914 * 4 3 2 25 25 C 1.40180 * 133.58129 * 180.24305 * 24 4 3 26 26 C 1.36327 * 119.20190 * 180.02562 * 25 24 4 27 27 C 1.40387 * 119.55976 * 359.95613 * 26 25 24 28 28 C 1.35031 * 120.44078 * 0.02562 * 27 26 25 29 29 N 1.36249 * 125.08742 * 179.67050 * 2 1 3 30 30 H 1.08994 * 109.46526 * 270.33094 * 1 2 3 31 31 H 1.09003 * 109.46851 * 30.33054 * 1 2 3 32 32 H 1.08991 * 109.46973 * 150.32704 * 1 2 3 33 33 H 0.97000 * 119.99803 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.47208 * 59.99749 * 8 7 5 35 35 H 1.09000 * 109.47180 * 300.00159 * 8 7 5 36 36 H 1.08992 * 109.46983 * 59.99798 * 9 8 7 37 37 H 1.09003 * 109.46760 * 299.99588 * 9 8 7 38 38 H 1.08999 * 110.71715 * 271.95309 * 12 10 9 39 39 H 1.08997 * 110.71630 * 35.04670 * 12 10 9 40 40 H 1.09004 * 109.88141 * 97.22592 * 13 12 10 41 41 H 1.09001 * 109.88609 * 218.23118 * 13 12 10 42 42 H 0.96997 * 119.99818 * 179.97438 * 18 17 15 43 43 H 1.08992 * 110.36982 * 265.26424 * 23 14 13 44 44 H 1.09001 * 110.36388 * 143.04866 * 23 14 13 45 45 H 1.07999 * 120.39801 * 359.97438 * 25 24 4 46 46 H 1.08004 * 120.22346 * 180.02562 * 26 25 24 47 47 H 1.08003 * 119.78406 * 180.02562 * 27 26 25 48 48 H 1.08004 * 119.69906 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 -0.0028 5 6 4.7066 1.6115 -0.0066 6 8 5.8368 1.1582 -0.0033 7 7 4.5156 2.9457 -0.0140 8 6 5.6677 3.8506 -0.0184 9 6 5.1778 5.3000 -0.0258 10 6 6.3810 6.2450 -0.0311 11 1 7.0251 6.0494 -0.8884 12 6 5.9248 7.7278 -0.0051 13 6 7.1203 8.4457 0.6559 14 7 7.8657 7.4363 1.4273 15 6 9.0086 7.6616 2.1470 16 1 9.4334 6.8706 2.7473 17 6 9.6212 8.9065 2.1049 18 7 9.0328 9.9090 1.4875 19 14 11.2806 9.1590 2.9248 20 1 12.3604 8.9873 1.9198 21 1 11.3480 10.5287 3.4945 22 1 11.4526 8.1618 4.0116 23 6 7.1748 6.1406 1.2951 24 6 3.5965 -0.6929 0.0047 25 6 4.6394 -1.6296 0.0103 26 6 4.3390 -2.9593 0.0168 27 6 2.9953 -3.3658 0.0186 28 6 2.0034 -2.4496 0.0135 29 7 2.2903 -1.1149 0.0064 30 1 -0.3632 0.0059 1.0276 31 1 -0.3633 0.8870 -0.5190 32 1 -0.3633 -0.8928 -0.5087 33 1 3.6153 3.3067 -0.0164 34 1 6.2713 3.6661 -0.9071 35 1 6.2704 3.6758 0.8728 36 1 4.5745 5.4842 0.8630 37 1 4.5749 5.4751 -0.9169 38 1 5.7634 8.0993 -1.0171 39 1 5.0223 7.8431 0.5951 40 1 7.7647 8.8757 -0.1109 41 1 6.7599 9.2312 1.3201 42 1 9.4608 10.7790 1.4585 43 1 6.4950 5.9860 2.1329 44 1 7.8995 5.3282 1.2405 45 1 5.6684 -1.3017 0.0088 46 1 5.1295 -3.6952 0.0216 47 1 2.7532 -4.4183 0.0241 48 1 0.9737 -2.7757 0.0145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494031321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:31 Heat of formation + Delta-G solvation = 65.393431 kcal Electronic energy + Delta-G solvation = -28435.922072 eV Core-core repulsion = 24492.252583 eV Total energy + Delta-G solvation = -3943.669489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.27279 -39.40017 -37.93467 -37.65597 -35.07818 -33.98327 -32.89923 -32.01835 -30.95608 -30.35539 -28.95130 -27.53372 -26.33524 -24.80276 -24.31267 -23.61956 -22.02871 -21.59893 -20.54368 -19.89747 -19.38519 -18.12989 -17.35956 -16.76584 -16.63702 -16.59261 -15.98989 -15.59948 -15.47532 -14.96416 -14.71169 -14.48588 -14.16297 -13.70293 -13.66511 -13.59374 -13.49580 -13.09072 -12.67941 -12.37414 -12.24846 -12.13439 -12.05258 -11.82790 -11.75129 -11.44920 -11.06930 -10.94672 -10.87763 -10.80301 -10.69925 -10.15010 -10.05472 -9.86782 -9.80674 -9.76244 -9.65368 -9.54699 -8.95937 -8.49192 -7.85819 -6.72227 -5.63765 -2.95011 0.21462 0.64840 2.00417 2.02231 2.83543 3.23394 3.46397 3.48458 3.51515 3.53443 3.82655 3.93283 4.14818 4.32263 4.43814 4.58198 4.60488 4.86938 4.87354 5.01477 5.06106 5.15949 5.23465 5.31824 5.36821 5.41305 5.57201 5.59613 5.72505 5.77641 5.78740 5.85751 5.94279 6.02846 6.07745 6.13699 6.26087 6.33691 6.49180 6.55272 6.63673 6.65986 6.70817 6.84328 7.08660 7.23557 7.65028 7.66173 7.73507 7.91586 8.28263 8.35349 9.31099 9.92165 10.59956 11.48763 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.001834 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.473447 B =15267.221253 C =16245.768402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.415 5.415 4 C -0.058 4.058 5 C 0.603 3.397 6 O -0.545 6.545 7 N -0.714 5.714 8 C 0.119 3.881 9 C -0.116 4.116 10 C -0.100 4.100 11 H 0.076 0.924 12 C -0.138 4.138 13 C 0.176 3.824 14 N -0.607 5.607 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.139 3.861 24 C 0.076 3.924 25 C -0.066 4.066 26 C -0.116 4.116 27 C -0.130 4.130 28 C 0.047 3.953 29 N -0.362 5.362 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.406 0.594 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.251 0.749 43 H 0.017 0.983 44 H 0.038 0.962 45 H 0.161 0.839 46 H 0.143 0.857 47 H 0.152 0.848 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.881 -27.761 -5.962 35.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 N -0.130 5.130 4 C -0.192 4.192 5 C 0.390 3.610 6 O -0.423 6.423 7 N -0.364 5.364 8 C -0.004 4.004 9 C -0.154 4.154 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.051 3.949 14 N -0.334 5.334 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.207 1.207 23 C 0.013 3.987 24 C -0.037 4.037 25 C -0.086 4.086 26 C -0.137 4.137 27 C -0.150 4.150 28 C -0.074 4.074 29 N -0.033 5.033 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.179 0.821 46 H 0.161 0.839 47 H 0.169 0.831 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.339 -26.989 -5.901 34.306 hybrid contribution 0.659 -0.475 0.444 0.926 sum -19.680 -27.464 -5.457 34.225 Atomic orbital electron populations 1.20200 0.83803 1.04343 1.03832 1.23337 0.95695 0.78844 1.11158 1.70011 1.01418 1.27526 1.14080 1.20518 0.91539 0.89689 1.17462 1.16456 0.86345 0.81768 0.76468 1.90822 1.23167 1.76839 1.51489 1.45819 1.10950 1.05311 1.74310 1.21517 0.87728 0.88313 1.02863 1.21737 0.98706 0.92653 1.02313 1.22261 0.95437 0.94565 0.99693 0.90590 1.22888 0.99755 0.94906 1.00085 1.21174 0.89071 0.90393 0.94252 1.44553 1.27576 1.03397 1.57825 1.19082 0.98729 0.96967 1.20562 0.90462 1.24820 0.98931 0.95967 1.00908 1.69985 1.37802 1.00985 1.48153 0.86127 0.84190 0.77042 0.78632 1.21675 1.21861 1.20659 1.21617 0.93985 0.89847 0.93266 1.19285 0.84003 0.94318 1.06082 1.20868 0.99294 0.91216 0.97219 1.21255 0.96640 0.95976 0.99869 1.20941 0.92328 1.00043 1.01727 1.21664 1.01573 0.80239 1.03972 1.42852 1.07913 1.06535 1.46012 0.89935 0.88596 0.90774 0.75872 0.91331 0.90807 0.91277 0.91632 0.92376 0.92569 0.93579 0.94322 0.93878 0.96537 0.94370 0.82123 0.83937 0.83059 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.32 36.01 0.37 0.07 16 2 C 0.17 1.56 7.94 -154.56 -1.23 0.33 16 3 N -0.41 -5.05 10.90 -6.74 -0.07 -5.12 16 4 C -0.06 -0.78 7.05 -82.58 -0.58 -1.36 16 5 C 0.60 9.17 7.77 -13.03 -0.10 9.07 16 6 O -0.55 -9.59 15.75 5.12 0.08 -9.51 16 7 N -0.71 -9.69 5.55 -61.73 -0.34 -10.04 16 8 C 0.12 1.70 5.52 -4.04 -0.02 1.68 16 9 C -0.12 -1.60 4.85 -26.73 -0.13 -1.73 16 10 C -0.10 -1.76 3.07 -88.47 -0.27 -2.03 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 12 C -0.14 -2.63 6.42 -24.90 -0.16 -2.79 16 13 C 0.18 4.43 5.39 -2.92 -0.02 4.41 16 14 N -0.61 -16.22 3.40 -169.86 -0.58 -16.80 16 15 C -0.22 -6.55 10.27 -15.06 -0.15 -6.70 16 16 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 17 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 18 N -0.92 -27.97 10.38 55.49 0.58 -27.39 16 19 Si 0.91 22.86 29.56 -169.99 -5.02 17.83 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 C 0.14 3.00 5.89 -2.53 -0.01 2.98 16 24 C 0.08 0.89 6.72 -83.99 -0.56 0.32 16 25 C -0.07 -0.65 9.73 -39.54 -0.38 -1.04 16 26 C -0.12 -0.74 10.08 -39.46 -0.40 -1.14 16 27 C -0.13 -0.60 9.98 -39.91 -0.40 -1.00 16 28 C 0.05 0.25 10.77 -16.60 -0.18 0.08 16 29 N -0.36 -3.29 2.94 -57.93 -0.17 -3.46 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.18 7.98 -51.93 -0.41 -0.24 16 33 H 0.41 4.85 8.17 -40.82 -0.33 4.52 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.17 7.45 -51.93 -0.39 0.78 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 40 H 0.05 1.28 7.31 -51.93 -0.38 0.90 16 41 H 0.04 1.07 7.62 -51.93 -0.40 0.67 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 44 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 45 H 0.16 1.69 7.17 -52.49 -0.38 1.31 16 46 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.15 0.19 8.06 -52.48 -0.42 -0.23 16 48 H 0.17 0.27 7.94 -52.48 -0.42 -0.15 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -36.55 394.03 -11.23 -47.77 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.30 Total: 0.03 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.33 Total: 0.75 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.59 Total: -62.82 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.55 -11.23 -47.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494031321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.168 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds