Wall clock time and date at job start Wed Apr 1 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 C 1.50701 * 109.47417 * 239.99863 * 2 1 3 5 5 H 1.07996 * 120.00360 * 240.00422 * 4 2 1 6 6 C 1.37883 * 119.99947 * 59.99895 * 4 2 1 7 7 N 1.31512 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99849 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46775 * 120.00554 * 8 6 4 11 11 H 1.48496 * 109.47212 * 240.00107 * 8 6 4 12 12 C 1.53000 * 109.47255 * 120.00080 * 2 1 3 13 13 N 1.46502 * 109.46851 * 300.00199 * 12 2 1 14 14 C 1.34777 * 120.00044 * 180.02562 * 13 12 2 15 15 O 1.21687 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.46774 * 120.00097 * 180.02562 * 14 13 12 17 17 C 1.41485 * 126.51680 * 359.67713 * 16 14 13 18 18 N 1.30286 * 108.18969 * 180.26393 * 17 16 14 19 19 N 1.39898 * 109.23308 * 0.02562 * 18 17 16 20 20 C 1.46496 * 125.74718 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47042 * 269.95092 * 20 19 18 22 22 C 1.38235 * 120.00563 * 269.72793 * 21 20 19 23 23 C 1.38226 * 120.00238 * 179.76209 * 22 21 20 24 24 C 1.38239 * 120.00028 * 0.51384 * 23 22 21 25 25 C 1.38231 * 119.99743 * 359.74311 * 24 23 22 26 26 C 1.38233 * 120.00368 * 359.97438 * 25 24 23 27 27 C 1.34847 * 108.50466 * 359.97438 * 19 18 17 28 28 N 1.38010 * 126.44522 * 179.97438 * 27 19 18 29 29 H 1.08996 * 109.47054 * 300.00460 * 1 2 3 30 30 H 1.09006 * 109.47151 * 60.00069 * 1 2 3 31 31 H 1.08998 * 109.47419 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47447 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47457 * 299.99928 * 3 2 1 34 34 H 1.09002 * 109.47194 * 60.00148 * 3 2 1 35 35 H 0.96997 * 119.99573 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47362 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47186 * 59.99685 * 12 2 1 38 38 H 0.96994 * 120.00246 * 359.97438 * 13 12 2 39 39 H 1.08003 * 125.90742 * 0.23654 * 17 16 14 40 40 H 1.08989 * 109.47181 * 29.95446 * 20 19 18 41 41 H 1.09001 * 109.46964 * 149.95795 * 20 19 18 42 42 H 1.08009 * 119.99525 * 0.02562 * 22 21 20 43 43 H 1.08008 * 120.00169 * 180.22828 * 23 22 21 44 44 H 1.07998 * 120.00138 * 179.71777 * 24 23 22 45 45 H 1.08006 * 119.99932 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00213 * 179.97438 * 26 25 24 47 47 H 0.97008 * 120.00012 * 180.02562 * 28 27 19 48 48 H 0.96991 * 120.00310 * 0.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5772 -1.4801 3.7812 16 6 1.3878 0.2008 4.8679 17 6 0.5755 1.3588 4.8988 18 7 0.3589 1.6705 6.1452 19 7 1.0090 0.7470 6.9708 20 6 1.0042 0.7568 8.4358 21 6 2.1657 1.5761 8.9364 22 6 3.3844 0.9708 9.1802 23 6 4.4512 1.7231 9.6347 24 6 4.2965 3.0790 9.8556 25 6 3.0764 3.6833 9.6168 26 6 2.0112 2.9320 9.1567 27 6 1.6398 -0.1544 6.1911 28 7 2.3939 -1.2266 6.6229 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7096 1.1617 -3.4844 36 1 3.1299 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.2001 1.8924 4.0381 40 1 0.0713 1.1928 8.7931 41 1 1.0934 -0.2644 8.8062 42 1 3.5041 -0.0893 9.0116 43 1 5.4043 1.2508 9.8218 44 1 5.1287 3.6660 10.2150 45 1 2.9554 4.7425 9.7897 46 1 1.0578 3.4041 8.9706 47 1 2.8088 -1.8193 5.9767 48 1 2.5091 -1.3875 7.5724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597763708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:18 Heat of formation + Delta-G solvation = 56.955400 kcal Electronic energy + Delta-G solvation = -29182.819041 eV Core-core repulsion = 25238.783652 eV Total energy + Delta-G solvation = -3944.035389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36608 -39.54786 -38.59382 -36.19823 -35.05513 -34.06767 -33.05866 -31.30100 -31.06516 -30.51016 -28.63382 -26.77945 -25.63434 -25.45018 -24.72215 -23.07615 -22.22526 -22.14139 -20.51999 -19.78277 -18.66837 -18.11365 -17.20369 -16.83732 -16.12768 -15.93432 -15.71048 -15.40189 -15.15872 -14.85091 -14.63706 -14.48181 -14.22083 -13.81172 -13.37092 -13.25228 -13.19886 -12.90911 -12.79483 -12.63692 -12.53419 -12.07688 -11.66136 -11.42344 -11.29707 -11.24620 -11.13894 -10.81389 -10.77805 -10.60710 -10.29978 -10.13921 -9.54270 -9.44438 -9.32228 -9.30149 -9.13262 -9.02263 -8.69720 -8.37159 -8.22016 -7.69886 -5.96053 -4.05544 0.78749 1.01473 1.93640 2.25062 2.42353 3.30939 3.39227 3.39420 3.44106 3.63583 4.00743 4.01557 4.22247 4.23809 4.46426 4.56942 4.60290 4.73284 4.86500 4.98223 5.10507 5.18433 5.30147 5.30644 5.47929 5.52766 5.63060 5.82481 6.02845 6.11011 6.12850 6.27408 6.35919 6.44925 6.56725 6.58389 6.65767 6.90227 6.92849 7.05650 7.12004 7.17717 7.30334 7.38226 7.46943 7.64607 7.76248 7.84010 8.09579 8.19784 8.35930 8.46837 8.92885 8.99664 9.59835 11.05349 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.002129 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.547592 B =13147.850046 C =13250.124250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.136 3.864 13 N -0.713 5.713 14 C 0.594 3.406 15 O -0.581 6.581 16 C -0.363 4.363 17 C 0.114 3.886 18 N -0.307 5.307 19 N -0.396 5.396 20 C 0.177 3.823 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.088 4.088 27 C 0.432 3.568 28 N -0.832 5.832 29 H 0.007 0.993 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.007 0.993 35 H 0.258 0.742 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.396 0.604 39 H 0.188 0.812 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.432 0.568 48 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 3.465 26.831 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.013 3.987 13 N -0.362 5.362 14 C 0.383 3.617 15 O -0.464 6.464 16 C -0.382 4.382 17 C -0.076 4.076 18 N -0.125 5.125 19 N -0.184 5.184 20 C 0.056 3.944 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.106 4.106 27 C 0.198 3.802 28 N -0.382 5.382 29 H 0.026 0.974 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.231 0.769 39 H 0.204 0.796 40 H 0.126 0.874 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.269 0.731 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.216 3.712 27.593 27.868 hybrid contribution 0.731 -0.858 -1.285 1.709 sum 1.947 2.854 26.308 26.534 Atomic orbital electron populations 1.21820 0.97767 0.99153 1.00078 1.18358 0.92799 0.92764 0.90642 1.21822 0.98545 0.98386 1.00075 1.21038 1.31197 1.11976 0.89924 0.92445 1.24883 0.94950 0.94958 0.98812 1.69819 1.36848 1.22794 1.23003 0.86537 0.78603 0.79752 0.83109 1.19805 1.21129 1.21127 1.21644 0.97952 0.95661 0.83416 1.45974 1.52890 1.31785 1.05588 1.16976 0.79300 0.82979 0.82431 1.90622 1.40987 1.27757 1.87030 1.19478 1.20607 1.07034 0.91097 1.23813 0.94562 0.93984 0.95218 1.77086 1.21017 1.13012 1.01414 1.48276 1.42623 1.22212 1.05269 1.20423 0.98378 1.00484 0.75145 1.20045 0.95328 0.95033 1.01507 1.21012 0.92529 0.99727 0.98747 1.21144 0.98731 0.94335 0.99755 1.21248 0.97523 0.94988 0.99134 1.21204 0.93137 1.00082 0.99589 1.21099 0.99445 0.92998 0.97077 1.18046 0.87838 0.84783 0.89495 1.41793 1.56338 1.29362 1.10715 0.97369 0.89694 0.95499 0.95516 0.89675 0.97392 0.93139 0.92950 0.92920 0.76931 0.79552 0.87418 0.88862 0.86398 0.85788 0.85883 0.85736 0.85515 0.73105 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 4 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.86 9.35 55.43 0.52 -23.35 16 8 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.14 2.97 4.50 -4.04 -0.02 2.95 16 13 N -0.71 -13.39 4.95 -61.59 -0.30 -13.69 16 14 C 0.59 11.06 7.79 -12.81 -0.10 10.96 16 15 O -0.58 -12.06 15.14 5.20 0.08 -11.98 16 16 C -0.36 -5.68 6.15 -104.81 -0.64 -6.33 16 17 C 0.11 1.60 11.49 -16.97 -0.20 1.40 16 18 N -0.31 -4.18 12.47 30.88 0.38 -3.80 16 19 N -0.40 -4.66 3.58 -61.22 -0.22 -4.88 16 20 C 0.18 1.41 6.34 -5.20 -0.03 1.38 16 21 C -0.12 -0.99 5.46 -104.62 -0.57 -1.57 16 22 C -0.10 -0.80 9.70 -39.59 -0.38 -1.18 16 23 C -0.12 -0.93 10.05 -39.59 -0.40 -1.32 16 24 C -0.11 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 26 C -0.09 -0.75 9.70 -39.58 -0.38 -1.13 16 27 C 0.43 5.73 7.98 -153.78 -1.23 4.50 16 28 N -0.83 -8.72 9.02 31.40 0.28 -8.44 16 29 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 30 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 34 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.40 6.77 5.11 -40.82 -0.21 6.56 16 39 H 0.19 2.17 7.50 -52.48 -0.39 1.78 16 40 H 0.11 0.74 8.08 -51.94 -0.42 0.32 16 41 H 0.09 0.51 7.40 -51.93 -0.38 0.13 16 42 H 0.12 0.71 7.22 -52.48 -0.38 0.33 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.43 5.22 7.01 -40.82 -0.29 4.94 16 48 H 0.39 2.70 7.21 -40.82 -0.29 2.40 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -31.79 390.71 -9.62 -41.41 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.63 Total: 11.97 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -4.60 Total: -9.07 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.66 Total: -54.16 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.79 -9.62 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.364 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds