Wall clock time and date at job start Wed Apr 1 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 C 1.50701 * 109.47417 * 239.99863 * 2 1 3 5 5 H 1.07996 * 120.00360 * 240.00422 * 4 2 1 6 6 C 1.37883 * 119.99947 * 59.99895 * 4 2 1 7 7 N 1.31512 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99849 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46775 * 120.00554 * 8 6 4 11 11 H 1.48496 * 109.47212 * 240.00107 * 8 6 4 12 12 C 1.53000 * 109.47255 * 120.00080 * 2 1 3 13 13 N 1.46502 * 109.46851 * 300.00199 * 12 2 1 14 14 C 1.34777 * 120.00044 * 180.02562 * 13 12 2 15 15 O 1.21687 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.46774 * 120.00097 * 180.02562 * 14 13 12 17 17 C 1.41485 * 126.51680 * 359.67713 * 16 14 13 18 18 N 1.30286 * 108.18969 * 180.26393 * 17 16 14 19 19 N 1.39898 * 109.23308 * 0.02562 * 18 17 16 20 20 C 1.46496 * 125.74718 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47042 * 269.95092 * 20 19 18 22 22 C 1.38235 * 120.00563 * 269.72793 * 21 20 19 23 23 C 1.38226 * 120.00238 * 179.76209 * 22 21 20 24 24 C 1.38239 * 120.00028 * 0.51384 * 23 22 21 25 25 C 1.38231 * 119.99743 * 359.74311 * 24 23 22 26 26 C 1.38233 * 120.00368 * 359.97438 * 25 24 23 27 27 C 1.34847 * 108.50466 * 359.97438 * 19 18 17 28 28 N 1.38010 * 126.44522 * 179.97438 * 27 19 18 29 29 H 1.08996 * 109.47054 * 300.00460 * 1 2 3 30 30 H 1.09006 * 109.47151 * 60.00069 * 1 2 3 31 31 H 1.08998 * 109.47419 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47447 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47457 * 299.99928 * 3 2 1 34 34 H 1.09002 * 109.47194 * 60.00148 * 3 2 1 35 35 H 0.96997 * 119.99573 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47362 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47186 * 59.99685 * 12 2 1 38 38 H 0.96994 * 120.00246 * 359.97438 * 13 12 2 39 39 H 1.08003 * 125.90742 * 0.23654 * 17 16 14 40 40 H 1.08989 * 109.47181 * 29.95446 * 20 19 18 41 41 H 1.09001 * 109.46964 * 149.95795 * 20 19 18 42 42 H 1.08009 * 119.99525 * 0.02562 * 22 21 20 43 43 H 1.08008 * 120.00169 * 180.22828 * 23 22 21 44 44 H 1.07998 * 120.00138 * 179.71777 * 24 23 22 45 45 H 1.08006 * 119.99932 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00213 * 179.97438 * 26 25 24 47 47 H 0.97008 * 120.00012 * 180.02562 * 28 27 19 48 48 H 0.96991 * 120.00310 * 0.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5772 -1.4801 3.7812 16 6 1.3878 0.2008 4.8679 17 6 0.5755 1.3588 4.8988 18 7 0.3589 1.6705 6.1452 19 7 1.0090 0.7470 6.9708 20 6 1.0042 0.7568 8.4358 21 6 2.1657 1.5761 8.9364 22 6 3.3844 0.9708 9.1802 23 6 4.4512 1.7231 9.6347 24 6 4.2965 3.0790 9.8556 25 6 3.0764 3.6833 9.6168 26 6 2.0112 2.9320 9.1567 27 6 1.6398 -0.1544 6.1911 28 7 2.3939 -1.2266 6.6229 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7096 1.1617 -3.4844 36 1 3.1299 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.2001 1.8924 4.0381 40 1 0.0713 1.1928 8.7931 41 1 1.0934 -0.2644 8.8062 42 1 3.5041 -0.0893 9.0116 43 1 5.4043 1.2508 9.8218 44 1 5.1287 3.6660 10.2150 45 1 2.9554 4.7425 9.7897 46 1 1.0578 3.4041 8.9706 47 1 2.8088 -1.8193 5.9767 48 1 2.5091 -1.3875 7.5724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597763708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:17 Heat of formation + Delta-G solvation = 38.730568 kcal Electronic energy + Delta-G solvation = -29183.609329 eV Core-core repulsion = 25238.783652 eV Total energy + Delta-G solvation = -3944.825677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36191 -40.31897 -39.90839 -37.95635 -36.00953 -34.85037 -34.77407 -32.71109 -31.85254 -31.50749 -29.76292 -27.70616 -27.50654 -27.27440 -26.35483 -23.74688 -23.32440 -22.88673 -21.45253 -21.05972 -20.46515 -19.14057 -18.18417 -17.76214 -17.57954 -17.05222 -16.69334 -16.57972 -16.32124 -16.09275 -15.98816 -15.71029 -15.36018 -14.80970 -14.62098 -14.37891 -14.34503 -14.16807 -13.92257 -13.89637 -13.52309 -13.31794 -13.14226 -13.05357 -12.64610 -12.53769 -12.26907 -12.19343 -12.16308 -12.10962 -11.96630 -11.83796 -11.42642 -11.17872 -10.76122 -10.61253 -10.36099 -10.08917 -9.88250 -9.84794 -9.75272 -8.79219 -7.98359 -6.13663 0.17631 0.44438 0.88436 1.29775 1.39425 1.43263 1.47224 1.56786 2.45075 2.66932 2.67426 2.69525 2.92203 3.24998 3.49379 3.63615 3.88859 4.06635 4.08133 4.22322 4.23363 4.36747 4.44906 4.48401 4.57136 4.59983 4.69405 4.70388 4.79757 4.98395 5.07983 5.08255 5.12519 5.19375 5.26272 5.37268 5.45516 5.48435 5.53917 5.56683 5.61149 5.71505 5.72718 5.74412 6.02815 6.20294 6.26741 6.28642 6.48467 6.52610 6.81166 6.90994 6.97377 7.52869 7.53686 9.00769 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.002129 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.547592 B =13147.850046 C =13250.124250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.525 4.525 5 H 0.044 0.956 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.153 3.847 13 N -0.710 5.710 14 C 0.592 3.408 15 O -0.609 6.609 16 C -0.394 4.394 17 C 0.112 3.888 18 N -0.316 5.316 19 N -0.388 5.388 20 C 0.169 3.831 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.133 4.133 26 C -0.103 4.103 27 C 0.437 3.563 28 N -0.817 5.817 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.405 0.595 39 H 0.204 0.796 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.427 0.573 48 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 3.713 28.647 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.030 3.970 13 N -0.359 5.359 14 C 0.383 3.617 15 O -0.494 6.494 16 C -0.413 4.413 17 C -0.078 4.078 18 N -0.134 5.134 19 N -0.176 5.176 20 C 0.050 3.950 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.151 4.151 24 C -0.137 4.137 25 C -0.151 4.151 26 C -0.121 4.121 27 C 0.200 3.800 28 N -0.368 5.368 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.241 0.759 39 H 0.221 0.779 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.146 0.854 47 H 0.263 0.737 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.241 3.976 29.466 29.759 hybrid contribution 0.757 -0.925 -1.707 2.084 sum 1.998 3.051 27.759 27.998 Atomic orbital electron populations 1.21665 0.97143 0.98641 1.00373 1.18354 0.93238 0.92981 0.90382 1.21669 0.97844 0.97973 1.00364 1.21307 1.31454 1.12033 0.91559 0.93748 1.25463 0.95233 0.95644 1.00968 1.69922 1.37145 1.23334 1.23447 0.85708 0.78091 0.78724 0.80279 1.19990 1.20776 1.20790 1.21195 0.96766 0.94937 0.84142 1.45772 1.53268 1.32000 1.04907 1.17368 0.78693 0.82670 0.82926 1.90598 1.42276 1.29056 1.87438 1.19314 1.22779 1.08388 0.90855 1.24072 0.94189 0.93551 0.95969 1.77036 1.21258 1.13631 1.01448 1.48493 1.41604 1.21155 1.06335 1.20806 0.98938 1.02352 0.72898 1.20118 0.95706 0.95089 1.02019 1.21285 0.92368 1.00732 0.98488 1.21458 0.99500 0.94596 0.99529 1.21555 0.97994 0.95359 0.98761 1.21462 0.93218 1.00938 0.99514 1.21282 0.99863 0.93430 0.97572 1.18083 0.87484 0.85186 0.89221 1.41757 1.55066 1.28150 1.11791 0.94421 0.91920 0.96355 0.96436 0.91876 0.94480 0.93102 0.94611 0.94492 0.75877 0.77936 0.86304 0.86062 0.84737 0.84187 0.84155 0.84396 0.85379 0.73716 0.75660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.51 8.08 71.98 0.58 -4.93 16 4 C -0.52 -28.22 8.01 25.60 0.21 -28.01 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.41 5.15 84.66 0.44 1.85 16 7 N -0.90 -48.62 9.35 21.45 0.20 -48.42 16 8 Si 0.94 43.18 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.15 6.77 4.50 86.38 0.39 7.16 16 13 N -0.71 -26.23 4.95 -466.98 -2.31 -28.54 16 14 C 0.59 21.74 7.79 86.47 0.67 22.42 16 15 O -0.61 -25.25 15.14 -4.31 -0.07 -25.31 16 16 C -0.39 -11.88 6.15 -19.99 -0.12 -12.00 16 17 C 0.11 2.97 11.49 85.72 0.99 3.96 16 18 N -0.32 -8.04 12.47 -56.22 -0.70 -8.74 16 19 N -0.39 -8.31 3.58 -347.61 -1.24 -9.55 16 20 C 0.17 2.29 6.34 85.63 0.54 2.83 16 21 C -0.13 -1.91 5.46 -19.86 -0.11 -2.02 16 22 C -0.11 -1.49 9.70 22.27 0.22 -1.27 16 23 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 24 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 25 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 26 C -0.10 -1.61 9.70 22.27 0.22 -1.40 16 27 C 0.44 10.80 7.98 132.69 1.06 11.86 16 28 N -0.82 -15.53 9.02 -54.57 -0.49 -16.02 16 29 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 30 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 34 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 35 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.40 13.28 5.11 -92.71 -0.47 12.81 16 39 H 0.20 4.36 7.50 -2.91 -0.02 4.34 16 40 H 0.12 1.36 8.08 -2.39 -0.02 1.34 16 41 H 0.12 0.92 7.40 -2.39 -0.02 0.91 16 42 H 0.13 1.23 7.22 -2.91 -0.02 1.21 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 46 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 47 H 0.43 9.76 7.01 -92.70 -0.65 9.11 16 48 H 0.41 4.51 7.21 -92.71 -0.67 3.84 16 Total: -1.00 -68.20 390.71 2.93 -65.27 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.78 Total: 32.76 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.30 Total: -6.63 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.55 Total: -111.28 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.07 Total: -25.31 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.20 2.93 -65.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.996 kcal (2) G-P(sol) polarization free energy of solvation -68.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds