Wall clock time and date at job start Wed Apr 1 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47299 * 2 1 4 4 N 1.46496 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99999 * 250.37804 * 4 3 2 6 6 O 1.21632 * 119.99760 * 182.94503 * 5 4 3 7 7 C 1.47256 * 119.99982 * 2.94628 * 5 4 3 8 8 C 1.38935 * 120.90269 * 30.60435 * 7 5 4 9 9 C 1.39773 * 119.18465 * 179.71842 * 8 7 5 10 10 C 1.35063 * 121.27850 * 0.60531 * 9 8 7 11 11 N 1.36232 * 121.76842 * 359.67637 * 10 9 8 12 12 N 1.40077 * 132.48821 * 180.02562 * 11 10 9 13 13 C 1.31358 * 108.88220 * 179.97438 * 12 11 10 14 14 C 1.38878 * 108.94860 * 359.97438 * 13 12 11 15 15 C 1.37191 * 120.18706 * 0.02562 * 11 10 9 16 16 C 1.46504 * 119.99969 * 70.37505 * 4 3 2 17 17 H 1.08991 * 110.88400 * 30.81445 * 16 4 3 18 18 C 1.55160 * 111.03532 * 266.91032 * 16 4 3 19 19 C 1.54326 * 102.94221 * 277.41181 * 18 16 4 20 20 N 1.47021 * 107.27253 * 337.80966 * 19 18 16 21 21 C 1.36934 * 125.64732 * 178.97417 * 20 19 18 22 22 H 1.08003 * 120.00233 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00101 * 359.96053 * 21 20 19 24 24 N 1.31621 * 120.00002 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00156 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47248 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47293 * 119.99943 * 25 23 21 28 28 H 1.48498 * 109.47415 * 240.00089 * 25 23 21 29 29 C 1.47429 * 108.70339 * 358.94213 * 20 19 18 30 30 H 1.08997 * 109.47325 * 300.00332 * 1 2 3 31 31 H 1.09004 * 109.46898 * 60.00269 * 1 2 3 32 32 H 1.08998 * 109.47003 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47325 * 239.99668 * 2 1 3 34 34 H 1.09004 * 109.46898 * 119.99731 * 2 1 3 35 35 H 1.08997 * 109.47203 * 59.99593 * 3 2 1 36 36 H 1.08998 * 109.46541 * 299.99702 * 3 2 1 37 37 H 1.07999 * 120.40913 * 359.97438 * 8 7 5 38 38 H 1.08001 * 119.35959 * 180.26289 * 9 8 7 39 39 H 1.07997 * 119.12129 * 179.65267 * 10 9 8 40 40 H 1.07999 * 125.52616 * 179.97438 * 13 12 11 41 41 H 1.07994 * 126.22121 * 179.97438 * 14 13 12 42 42 H 1.08991 * 110.72283 * 35.77765 * 18 16 4 43 43 H 1.09002 * 110.71442 * 159.05590 * 18 16 4 44 44 H 1.08998 * 109.87850 * 97.22789 * 19 18 16 45 45 H 1.09003 * 109.88260 * 218.39067 * 19 18 16 46 46 H 0.97003 * 119.99821 * 179.97438 * 24 23 21 47 47 H 1.08998 * 110.36288 * 265.28755 * 29 20 19 48 48 H 1.08995 * 110.36340 * 142.96695 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.8346 1.1003 6 8 5.3935 1.8858 1.0832 7 6 3.4431 2.2011 2.3224 8 6 2.2259 1.6052 2.6284 9 6 1.5614 1.9757 3.8009 10 6 2.0739 2.9083 4.6327 11 7 3.2605 3.5255 4.3741 12 7 3.9887 4.5029 5.0643 13 6 5.0863 4.7684 4.3932 14 6 5.1171 3.9812 3.2495 15 6 3.9715 3.2080 3.2446 16 6 4.2380 1.0162 -1.1941 17 1 3.6752 1.2475 -2.0984 18 6 4.5840 -0.4948 -1.1256 19 6 5.8632 -0.5176 -0.2626 20 7 6.4712 0.8183 -0.3477 21 6 7.6133 1.2177 0.2935 22 1 7.9804 2.2253 0.1653 23 6 8.2992 0.3276 1.1085 24 7 7.8514 -0.9001 1.2653 25 14 9.8576 0.8722 1.9826 26 1 10.1459 2.2891 1.6438 27 1 9.6731 0.7425 3.4504 28 1 10.9926 0.0184 1.5490 29 6 5.6479 1.6565 -1.2383 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8900 37 1 1.8004 0.8618 1.9706 38 1 0.6171 1.5111 4.0438 39 1 1.5282 3.1721 5.5265 40 1 5.8422 5.4829 4.6837 41 1 5.8941 3.9754 2.4995 42 1 3.7824 -1.0524 -0.6416 43 1 4.7837 -0.8901 -2.1215 44 1 5.6079 -0.7434 0.7727 45 1 6.5566 -1.2656 -0.6472 46 1 8.3309 -1.5222 1.8346 47 1 6.0434 1.6332 -2.2537 48 1 5.6111 2.6810 -0.8680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714857708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:40 Heat of formation + Delta-G solvation = 170.421804 kcal Electronic energy + Delta-G solvation = -32094.716422 eV Core-core repulsion = 28155.601305 eV Total energy + Delta-G solvation = -3939.115117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.76519 -39.96278 -37.26138 -36.18175 -35.76470 -32.88691 -32.50855 -31.44349 -30.49914 -29.04185 -28.44414 -27.24190 -26.06510 -24.49168 -24.01953 -22.56993 -21.92503 -21.56369 -20.61840 -19.83356 -18.57809 -17.45624 -17.08093 -16.58009 -16.39934 -15.68160 -15.52832 -15.13612 -14.89560 -14.35799 -14.28716 -14.11289 -13.67099 -13.60121 -13.43360 -13.05864 -12.76473 -12.51399 -12.30291 -12.03659 -11.90883 -11.80639 -11.72463 -11.62019 -11.38690 -11.25498 -10.84734 -10.70992 -10.68553 -10.64454 -10.59618 -10.14892 -9.91768 -9.86463 -9.71691 -9.39064 -9.21816 -8.67992 -8.22057 -7.98030 -7.41541 -6.32069 -5.39909 -2.63179 0.56779 1.22165 2.32750 2.88880 3.11121 3.39299 3.57574 3.62864 3.64902 3.89805 4.31782 4.54968 4.70180 4.76724 4.79164 4.84509 4.94997 4.96129 5.20140 5.30607 5.40639 5.46503 5.51295 5.55957 5.59732 5.71550 5.73460 5.75703 5.84575 5.88800 5.92032 5.95126 6.08074 6.10381 6.20341 6.24366 6.29114 6.40361 6.53726 6.64932 6.68537 6.84006 6.86296 6.96159 7.27850 7.67879 7.78287 7.81980 7.97128 8.06772 8.54528 9.04613 9.52971 10.14195 10.79810 11.73932 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008670 B = 0.006197 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.757364 B = 4517.240008 C = 6921.534358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.088 3.912 4 N -0.603 5.603 5 C 0.515 3.485 6 O -0.404 6.404 7 C -0.095 4.095 8 C -0.086 4.086 9 C -0.174 4.174 10 C 0.119 3.881 11 N -0.284 5.284 12 N -0.325 5.325 13 C 0.075 3.925 14 C -0.249 4.249 15 C 0.126 3.874 16 C 0.133 3.867 17 H 0.078 0.922 18 C -0.163 4.163 19 C 0.184 3.816 20 N -0.564 5.564 21 C -0.165 4.165 22 H 0.070 0.930 23 C -0.020 4.020 24 N -0.932 5.932 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.297 1.297 28 H -0.297 1.297 29 C 0.141 3.859 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.192 0.808 41 H 0.165 0.835 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.243 0.757 47 H 0.020 0.980 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.026 5.152 -0.450 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C -0.035 4.035 4 N -0.339 5.339 5 C 0.299 3.701 6 O -0.269 6.269 7 C -0.101 4.101 8 C -0.109 4.109 9 C -0.197 4.197 10 C -0.006 4.006 11 N -0.052 5.052 12 N -0.148 5.148 13 C -0.103 4.103 14 C -0.278 4.278 15 C 0.007 3.993 16 C 0.029 3.971 17 H 0.096 0.904 18 C -0.203 4.203 19 C 0.059 3.941 20 N -0.289 5.289 21 C -0.294 4.294 22 H 0.088 0.912 23 C -0.214 4.214 24 N -0.583 5.583 25 Si 0.734 3.266 26 H -0.208 1.208 27 H -0.224 1.224 28 H -0.225 1.225 29 C 0.014 3.986 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.209 0.791 41 H 0.182 0.818 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.697 5.529 0.818 19.515 hybrid contribution 1.045 -0.191 0.090 1.066 sum -17.652 5.339 0.908 18.464 Atomic orbital electron populations 1.21743 0.95381 1.01919 1.01838 1.22122 0.95704 0.97702 1.03415 1.22162 0.81123 0.96731 1.03529 1.47479 1.05035 1.67919 1.13489 1.17950 0.88449 0.81631 0.82120 1.91512 1.09879 1.44358 1.81186 1.20914 0.95108 0.97339 0.96695 1.22348 0.93158 0.98988 0.96405 1.20601 1.02803 1.00342 0.95904 1.21348 0.84793 0.93818 1.00654 1.46148 1.15127 1.27559 1.16390 1.77769 1.08485 1.08865 1.19721 1.23883 0.95054 0.98313 0.93001 1.21520 1.00310 1.02782 1.03182 1.20185 0.93712 0.97163 0.88198 1.22246 0.93908 0.95494 0.85436 0.90383 1.23463 1.00839 0.95130 1.00859 1.21027 0.88721 0.87829 0.96523 1.44223 1.25932 1.07170 1.51578 1.18849 0.96088 0.95696 1.18813 0.91176 1.24589 0.99357 0.96354 1.01067 1.69948 1.40313 1.04541 1.43485 0.86152 0.83527 0.77310 0.79572 1.20835 1.22431 1.22511 1.21673 0.87921 0.95623 0.93431 0.92696 0.92557 0.92457 0.90621 0.91278 0.88706 0.91591 0.82198 0.82932 0.81981 0.79123 0.81754 0.92002 0.91949 0.94203 0.94443 0.94622 0.96244 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.15 -1.47 4.39 -26.73 -0.12 -1.59 16 3 C 0.09 0.98 4.93 -4.04 -0.02 0.96 16 4 N -0.60 -9.50 2.63 -164.99 -0.43 -9.94 16 5 C 0.51 9.92 6.88 -12.59 -0.09 9.83 16 6 O -0.40 -9.69 8.65 5.25 0.05 -9.65 16 7 C -0.09 -1.60 5.62 -102.69 -0.58 -2.18 16 8 C -0.09 -1.09 7.50 -38.75 -0.29 -1.38 16 9 C -0.17 -1.77 9.90 -40.14 -0.40 -2.17 16 10 C 0.12 1.41 11.12 -16.73 -0.19 1.23 16 11 N -0.28 -4.55 3.89 -9.42 -0.04 -4.59 16 12 N -0.33 -5.37 12.66 30.51 0.39 -4.99 16 13 C 0.07 1.17 11.95 -17.52 -0.21 0.96 16 14 C -0.25 -4.56 10.34 -39.36 -0.41 -4.96 16 15 C 0.13 2.27 6.82 -82.19 -0.56 1.71 16 16 C 0.13 2.23 3.45 -65.78 -0.23 2.01 16 17 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 18 C -0.16 -2.96 6.34 -24.89 -0.16 -3.12 16 19 C 0.18 4.55 4.63 -3.06 -0.01 4.53 16 20 N -0.56 -14.50 1.77 -170.07 -0.30 -14.80 16 21 C -0.17 -4.77 8.30 -15.06 -0.13 -4.89 16 22 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 23 C -0.02 -0.60 5.49 -17.43 -0.10 -0.69 16 24 N -0.93 -28.85 10.31 55.49 0.57 -28.28 16 25 Si 0.90 23.83 29.55 -169.99 -5.02 18.80 16 26 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 28 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 29 C 0.14 2.94 5.94 -2.53 -0.02 2.93 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.79 6.64 -51.93 -0.35 0.45 16 34 H 0.07 0.76 6.91 -51.93 -0.36 0.40 16 35 H 0.10 1.00 4.08 -51.93 -0.21 0.79 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.16 1.72 3.39 -52.49 -0.18 1.54 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.16 3.22 7.61 -52.49 -0.40 2.82 16 42 H 0.06 1.02 6.15 -51.93 -0.32 0.70 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 1.13 7.36 -51.93 -0.38 0.75 16 45 H 0.04 1.04 7.51 -51.93 -0.39 0.65 16 46 H 0.24 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.99 7.00 -51.93 -0.36 0.63 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -36.29 368.20 -9.08 -45.37 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.72 Total: 0.04 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.12 Total: 2.48 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.19 Total: -62.60 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.05 Total: -9.65 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.02 Total: 18.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.29 -9.08 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714857708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.794 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds