Wall clock time and date at job start Wed Apr 1 2020 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46846 * 2 1 4 4 C 1.36934 * 119.99929 * 274.33587 * 3 2 1 5 5 H 1.07993 * 120.00317 * 337.80388 * 4 3 2 6 6 C 1.38814 * 119.99891 * 157.80861 * 4 3 2 7 7 N 1.31627 * 119.99945 * 7.72339 * 6 4 3 8 8 Si 1.86801 * 119.99951 * 187.73175 * 6 4 3 9 9 H 1.48496 * 109.47168 * 89.99496 * 8 6 4 10 10 H 1.48502 * 109.46905 * 209.99531 * 8 6 4 11 11 H 1.48495 * 109.46782 * 329.99191 * 8 6 4 12 12 C 1.46507 * 119.99656 * 94.33433 * 3 2 1 13 13 C 1.50703 * 109.46820 * 269.99727 * 12 3 2 14 14 O 1.21273 * 120.00447 * 0.02562 * 13 12 3 15 15 N 1.34774 * 119.99339 * 180.02562 * 13 12 3 16 16 C 1.46506 * 119.99850 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47187 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.47128 * 179.97438 * 17 16 15 19 19 C 1.39914 * 126.03129 * 269.69271 * 18 17 16 20 20 N 1.30873 * 108.24224 * 179.81540 * 19 18 17 21 21 N 1.40081 * 108.21657 * 0.43852 * 20 19 18 22 22 C 1.40189 * 126.05222 * 179.69659 * 21 20 19 23 23 C 1.38832 * 120.06613 * 179.75165 * 22 21 20 24 24 C 1.38122 * 119.93194 * 179.67928 * 23 22 21 25 25 C 1.38278 * 120.06932 * 0.61654 * 24 23 22 26 26 C 1.38287 * 120.13045 * 359.67951 * 25 24 23 27 27 C 1.38119 * 120.06164 * 0.02562 * 26 25 24 28 28 C 1.35214 * 107.89614 * 359.71873 * 21 20 19 29 29 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47273 * 300.00020 * 1 2 3 31 31 H 1.09004 * 109.47097 * 60.00278 * 1 2 3 32 32 H 1.08997 * 109.47073 * 240.00493 * 2 1 3 33 33 H 1.08993 * 109.46582 * 119.99700 * 2 1 3 34 34 H 0.96997 * 119.99743 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46763 * 150.00406 * 12 3 2 36 36 H 1.08992 * 109.47130 * 29.99943 * 12 3 2 37 37 H 0.96996 * 120.00672 * 359.97438 * 15 13 12 38 38 H 1.09002 * 109.47381 * 59.99381 * 16 15 13 39 39 H 1.09002 * 109.46911 * 299.99488 * 16 15 13 40 40 H 1.09002 * 109.46945 * 299.99673 * 17 16 15 41 41 H 1.09002 * 109.47298 * 59.99535 * 17 16 15 42 42 H 1.08002 * 125.88008 * 359.97438 * 19 18 17 43 43 H 1.08008 * 120.03622 * 359.97298 * 23 22 21 44 44 H 1.07999 * 119.96538 * 180.31602 * 24 23 22 45 45 H 1.08001 * 119.93720 * 179.70275 * 25 24 23 46 46 H 1.07990 * 119.96572 * 180.02562 * 26 25 24 47 47 H 1.08006 * 120.02851 * 180.02562 * 27 26 25 48 48 H 1.08003 * 126.14845 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1620 2.0567 -1.1825 5 1 2.2700 1.5095 -2.1072 6 6 2.1689 3.4448 -1.1926 7 7 2.1907 4.1110 -0.0576 8 14 2.1470 4.3671 -2.8168 9 1 0.7414 4.6185 -3.2244 10 1 2.8562 5.6624 -2.6601 11 1 2.8261 3.5537 -3.8571 12 6 2.3529 2.0399 1.2652 13 6 1.1318 2.7380 1.8063 14 8 0.0851 2.6897 1.1956 15 7 1.2030 3.4159 2.9689 16 6 0.0158 4.0941 3.4954 17 6 0.3653 4.7820 4.8165 18 6 -0.8558 5.4801 5.3577 19 6 -1.2331 6.8013 5.0939 20 7 -2.3472 7.0452 5.7359 21 7 -2.7101 5.8887 6.4381 22 6 -3.8398 5.7398 7.2547 23 6 -4.0834 4.5303 7.8912 24 6 -5.1937 4.3886 8.7005 25 6 -6.0692 5.4460 8.8668 26 6 -5.8325 6.6500 8.2293 27 6 -4.7207 6.7996 7.4236 28 6 -1.7777 4.9417 6.1891 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1951 5.0810 -0.0646 35 1 3.1440 2.7704 1.0964 36 1 2.6937 1.2946 1.9838 37 1 2.0400 3.4542 3.4576 38 1 -0.7750 3.3633 3.6646 39 1 -0.3256 4.8391 2.7767 40 1 0.7065 4.0367 5.5351 41 1 1.1563 5.5127 4.6477 42 1 -0.6985 7.4990 4.4663 43 1 -3.4027 3.7023 7.7575 44 1 -5.3809 3.4496 9.1999 45 1 -6.9393 5.3313 9.4963 46 1 -6.5178 7.4742 8.3614 47 1 -4.5362 7.7404 6.9262 48 1 -1.7703 3.9360 6.5828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121026343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:25 Heat of formation + Delta-G solvation = 100.863981 kcal Electronic energy + Delta-G solvation = -28719.176347 eV Core-core repulsion = 24777.044977 eV Total energy + Delta-G solvation = -3942.131370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.74917 -39.29754 -38.21584 -35.65960 -34.57749 -33.48139 -31.82776 -31.70400 -31.25123 -29.74380 -29.10244 -27.83958 -26.27316 -23.91339 -23.52383 -23.22143 -22.16897 -20.98532 -20.40644 -20.05146 -19.18891 -18.23142 -16.80592 -16.48492 -15.70610 -15.56197 -15.44352 -15.14195 -15.03052 -14.63667 -14.55400 -14.13389 -13.90558 -13.69816 -13.49615 -13.12704 -13.06782 -12.87099 -12.57407 -12.38950 -12.03049 -11.95034 -11.64867 -11.55789 -11.49766 -11.17544 -11.02534 -10.85707 -10.68799 -10.61886 -10.47677 -10.31879 -9.95996 -9.80450 -9.62447 -9.42494 -9.16305 -8.69328 -8.21616 -8.08929 -7.86836 -6.71201 -5.73138 -3.11614 0.54060 0.92898 1.96324 2.17981 2.60645 3.42444 3.44081 3.50260 3.52271 4.14925 4.33303 4.42671 4.44476 4.58959 4.62334 4.67903 4.76002 4.95761 5.06589 5.15189 5.17833 5.39578 5.47025 5.49238 5.53632 5.61663 5.64582 5.81358 5.83698 5.94201 5.98689 6.08589 6.20151 6.31683 6.35039 6.45891 6.49634 6.51888 6.55401 6.62247 6.72900 6.95787 6.96843 7.10870 7.40310 7.45910 7.50720 7.64966 7.81508 8.43173 8.81585 9.28148 9.84502 9.99916 10.37071 11.33892 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002115 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.052024 B =13236.516493 C =13965.718154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 N -0.579 5.579 4 C -0.239 4.239 5 H 0.073 0.927 6 C 0.006 3.994 7 N -0.908 5.908 8 Si 0.908 3.092 9 H -0.290 1.290 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.165 3.835 13 C 0.530 3.470 14 O -0.540 6.540 15 N -0.752 5.752 16 C 0.136 3.864 17 C -0.052 4.052 18 C -0.209 4.209 19 C 0.070 3.930 20 N -0.293 5.293 21 N -0.328 5.328 22 C 0.168 3.832 23 C -0.144 4.144 24 C -0.092 4.092 25 C -0.135 4.135 26 C -0.095 4.095 27 C -0.124 4.124 28 C 0.054 3.946 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.252 0.748 35 H 0.117 0.883 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.191 0.809 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.137 0.863 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 1.998 21.087 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 N -0.300 5.300 4 C -0.368 4.368 5 H 0.090 0.910 6 C -0.191 4.191 7 N -0.555 5.555 8 Si 0.739 3.261 9 H -0.217 1.217 10 H -0.219 1.219 11 H -0.208 1.208 12 C 0.035 3.965 13 C 0.317 3.683 14 O -0.414 6.414 15 N -0.407 5.407 16 C 0.010 3.990 17 C -0.091 4.091 18 C -0.219 4.219 19 C -0.118 4.118 20 N -0.111 5.111 21 N -0.103 5.103 22 C 0.075 3.925 23 C -0.165 4.165 24 C -0.111 4.111 25 C -0.154 4.154 26 C -0.114 4.114 27 C -0.144 4.144 28 C -0.088 4.088 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.042 0.958 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.208 0.792 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.145 0.855 46 H 0.149 0.851 47 H 0.155 0.845 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.624 2.943 20.848 23.584 hybrid contribution 0.662 0.287 -0.867 1.128 sum -9.963 3.231 19.981 22.560 Atomic orbital electron populations 1.22338 0.99210 0.97686 1.02955 1.20842 0.92484 0.86626 0.98131 1.43781 1.74003 1.09816 1.02368 1.19223 1.42448 0.88886 0.86208 0.90960 1.24917 1.00669 0.96562 0.96916 1.69657 1.55744 1.06446 1.23701 0.86189 0.77547 0.79046 0.83295 1.21682 1.21944 1.20765 1.20731 0.94956 0.94921 0.85883 1.22036 0.91530 0.77513 0.77212 1.90484 1.32216 1.61977 1.56764 1.46190 1.11887 1.56903 1.25751 1.20969 0.89282 0.95683 0.93026 1.20131 0.93572 0.98882 0.96489 1.20093 1.01280 0.95233 1.05342 1.24080 0.93324 0.96430 0.97936 1.77415 1.16252 1.05320 1.12089 1.45742 1.18293 1.09938 1.36356 1.17595 0.86404 0.95436 0.93019 1.20862 1.00050 0.95845 0.99757 1.20981 0.93461 0.99264 0.97347 1.21226 1.00026 0.93365 1.00781 1.21081 0.96516 0.97898 0.95910 1.20930 0.94337 0.98716 1.00373 1.22379 0.90331 0.95809 1.00284 0.95786 0.92434 0.93118 0.94120 0.94680 0.93674 0.86501 0.95837 0.78260 0.93396 0.92652 0.90960 0.90304 0.79216 0.85151 0.85010 0.85492 0.85150 0.84501 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.65 37.16 0.36 -3.17 16 2 C 0.15 3.16 6.44 -4.04 -0.03 3.14 16 3 N -0.58 -14.62 2.07 -174.61 -0.36 -14.98 16 4 C -0.24 -6.59 9.70 -15.06 -0.15 -6.73 16 5 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 6 C 0.01 0.16 5.41 -17.43 -0.09 0.07 16 7 N -0.91 -25.21 8.21 55.49 0.46 -24.76 16 8 Si 0.91 22.51 29.56 -169.99 -5.02 17.49 16 9 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.17 3.83 5.47 -5.19 -0.03 3.80 16 13 C 0.53 12.38 5.79 -10.99 -0.06 12.31 16 14 O -0.54 -14.96 13.89 5.56 0.08 -14.88 16 15 N -0.75 -13.72 5.56 -60.29 -0.33 -14.05 16 16 C 0.14 2.24 5.66 -4.04 -0.02 2.21 16 17 C -0.05 -0.61 5.81 -27.88 -0.16 -0.77 16 18 C -0.21 -2.56 5.35 -105.03 -0.56 -3.12 16 19 C 0.07 0.89 11.96 -17.33 -0.21 0.68 16 20 N -0.29 -4.08 11.87 30.64 0.36 -3.72 16 21 N -0.33 -4.18 3.80 -10.70 -0.04 -4.22 16 22 C 0.17 1.88 6.69 -83.59 -0.56 1.32 16 23 C -0.14 -1.28 9.46 -39.40 -0.37 -1.65 16 24 C -0.09 -0.66 10.04 -39.61 -0.40 -1.05 16 25 C -0.14 -0.93 10.04 -39.55 -0.40 -1.33 16 26 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 27 C -0.12 -1.27 9.66 -39.40 -0.38 -1.65 16 28 C 0.05 0.62 10.71 -17.10 -0.18 0.43 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.36 6.38 -51.93 -0.33 1.02 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 33 H 0.03 0.68 7.84 -51.93 -0.41 0.27 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.12 2.90 6.24 -51.93 -0.32 2.58 16 36 H 0.02 0.48 7.86 -51.93 -0.41 0.07 16 37 H 0.39 5.83 8.47 -40.82 -0.35 5.49 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 43 H 0.13 0.93 6.74 -52.48 -0.35 0.58 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.14 1.45 7.70 -52.48 -0.40 1.05 16 48 H 0.18 1.49 7.04 -52.48 -0.37 1.12 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -34.76 397.74 -9.65 -44.41 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.14 Total: 5.37 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.64 Total: 3.35 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.08 Total: -61.73 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.76 -9.65 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121026343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.272 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds