Wall clock time and date at job start Wed Apr 1 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46846 * 2 1 4 4 C 1.36934 * 119.99929 * 274.33587 * 3 2 1 5 5 H 1.07993 * 120.00317 * 337.80388 * 4 3 2 6 6 C 1.38814 * 119.99891 * 157.80861 * 4 3 2 7 7 N 1.31627 * 119.99945 * 7.72339 * 6 4 3 8 8 Si 1.86801 * 119.99951 * 187.73175 * 6 4 3 9 9 H 1.48496 * 109.47168 * 89.99496 * 8 6 4 10 10 H 1.48502 * 109.46905 * 209.99531 * 8 6 4 11 11 H 1.48495 * 109.46782 * 329.99191 * 8 6 4 12 12 C 1.46507 * 119.99656 * 94.33433 * 3 2 1 13 13 C 1.50703 * 109.46820 * 269.99727 * 12 3 2 14 14 O 1.21273 * 120.00447 * 0.02562 * 13 12 3 15 15 N 1.34774 * 119.99339 * 180.02562 * 13 12 3 16 16 C 1.46506 * 119.99850 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47187 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.47128 * 179.97438 * 17 16 15 19 19 C 1.39914 * 126.03129 * 269.69271 * 18 17 16 20 20 N 1.30873 * 108.24224 * 179.81540 * 19 18 17 21 21 N 1.40081 * 108.21657 * 0.43852 * 20 19 18 22 22 C 1.40189 * 126.05222 * 179.69659 * 21 20 19 23 23 C 1.38832 * 120.06613 * 179.75165 * 22 21 20 24 24 C 1.38122 * 119.93194 * 179.67928 * 23 22 21 25 25 C 1.38278 * 120.06932 * 0.61654 * 24 23 22 26 26 C 1.38287 * 120.13045 * 359.67951 * 25 24 23 27 27 C 1.38119 * 120.06164 * 0.02562 * 26 25 24 28 28 C 1.35214 * 107.89614 * 359.71873 * 21 20 19 29 29 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47273 * 300.00020 * 1 2 3 31 31 H 1.09004 * 109.47097 * 60.00278 * 1 2 3 32 32 H 1.08997 * 109.47073 * 240.00493 * 2 1 3 33 33 H 1.08993 * 109.46582 * 119.99700 * 2 1 3 34 34 H 0.96997 * 119.99743 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46763 * 150.00406 * 12 3 2 36 36 H 1.08992 * 109.47130 * 29.99943 * 12 3 2 37 37 H 0.96996 * 120.00672 * 359.97438 * 15 13 12 38 38 H 1.09002 * 109.47381 * 59.99381 * 16 15 13 39 39 H 1.09002 * 109.46911 * 299.99488 * 16 15 13 40 40 H 1.09002 * 109.46945 * 299.99673 * 17 16 15 41 41 H 1.09002 * 109.47298 * 59.99535 * 17 16 15 42 42 H 1.08002 * 125.88008 * 359.97438 * 19 18 17 43 43 H 1.08008 * 120.03622 * 359.97298 * 23 22 21 44 44 H 1.07999 * 119.96538 * 180.31602 * 24 23 22 45 45 H 1.08001 * 119.93720 * 179.70275 * 25 24 23 46 46 H 1.07990 * 119.96572 * 180.02562 * 26 25 24 47 47 H 1.08006 * 120.02851 * 180.02562 * 27 26 25 48 48 H 1.08003 * 126.14845 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1620 2.0567 -1.1825 5 1 2.2700 1.5095 -2.1072 6 6 2.1689 3.4448 -1.1926 7 7 2.1907 4.1110 -0.0576 8 14 2.1470 4.3671 -2.8168 9 1 0.7414 4.6185 -3.2244 10 1 2.8562 5.6624 -2.6601 11 1 2.8261 3.5537 -3.8571 12 6 2.3529 2.0399 1.2652 13 6 1.1318 2.7380 1.8063 14 8 0.0851 2.6897 1.1956 15 7 1.2030 3.4159 2.9689 16 6 0.0158 4.0941 3.4954 17 6 0.3653 4.7820 4.8165 18 6 -0.8558 5.4801 5.3577 19 6 -1.2331 6.8013 5.0939 20 7 -2.3472 7.0452 5.7359 21 7 -2.7101 5.8887 6.4381 22 6 -3.8398 5.7398 7.2547 23 6 -4.0834 4.5303 7.8912 24 6 -5.1937 4.3886 8.7005 25 6 -6.0692 5.4460 8.8668 26 6 -5.8325 6.6500 8.2293 27 6 -4.7207 6.7996 7.4236 28 6 -1.7777 4.9417 6.1891 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1951 5.0810 -0.0646 35 1 3.1440 2.7704 1.0964 36 1 2.6937 1.2946 1.9838 37 1 2.0400 3.4542 3.4576 38 1 -0.7750 3.3633 3.6646 39 1 -0.3256 4.8391 2.7767 40 1 0.7065 4.0367 5.5351 41 1 1.1563 5.5127 4.6477 42 1 -0.6985 7.4990 4.4663 43 1 -3.4027 3.7023 7.7575 44 1 -5.3809 3.4496 9.1999 45 1 -6.9393 5.3313 9.4963 46 1 -6.5178 7.4742 8.3614 47 1 -4.5362 7.7404 6.9262 48 1 -1.7703 3.9360 6.5828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121026343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:24 Heat of formation + Delta-G solvation = 80.370507 kcal Electronic energy + Delta-G solvation = -28720.065011 eV Core-core repulsion = 24777.044977 eV Total energy + Delta-G solvation = -3943.020034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.63348 -40.06835 -39.88128 -37.36311 -36.00416 -34.51586 -33.70341 -32.91118 -32.02759 -30.96378 -30.47094 -29.19533 -27.87527 -25.50111 -24.56915 -24.16966 -23.22276 -22.20131 -21.77649 -21.18701 -20.68895 -19.07617 -18.73798 -17.34361 -17.12482 -17.01256 -16.59478 -16.31642 -16.16703 -15.99173 -15.66379 -15.50857 -15.20338 -14.88670 -14.57058 -14.47385 -14.34513 -13.92706 -13.87439 -13.78080 -13.61591 -13.25828 -12.99763 -12.87691 -12.81016 -12.62782 -12.55368 -12.34387 -12.21395 -12.08882 -11.93087 -11.72719 -11.56716 -11.39210 -11.32245 -10.71883 -10.12878 -10.04665 -9.99602 -9.50921 -9.00103 -8.66514 -7.81008 -5.18997 -0.18768 0.31007 1.15903 1.36547 1.43629 1.49458 1.53582 1.64481 2.48419 2.64793 2.77928 2.92549 3.39926 3.43626 3.75444 3.79344 3.92350 3.93619 4.16024 4.22349 4.26849 4.33800 4.41272 4.42955 4.48469 4.63018 4.66453 4.71299 4.75067 4.79972 4.83109 4.90723 4.99716 5.04368 5.11050 5.23564 5.31452 5.33416 5.34905 5.36066 5.48318 5.52837 5.58516 5.67126 5.73820 5.78314 6.11304 6.17865 6.42156 6.54373 7.14004 7.32132 7.91507 8.20977 8.35571 9.22081 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002115 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.052024 B =13236.516493 C =13965.718154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 N -0.596 5.596 4 C -0.249 4.249 5 H 0.069 0.931 6 C -0.042 4.042 7 N -0.915 5.915 8 Si 0.959 3.041 9 H -0.307 1.307 10 H -0.291 1.291 11 H -0.269 1.269 12 C 0.163 3.837 13 C 0.528 3.472 14 O -0.590 6.590 15 N -0.736 5.736 16 C 0.143 3.857 17 C -0.031 4.031 18 C -0.226 4.226 19 C 0.057 3.943 20 N -0.326 5.326 21 N -0.332 5.332 22 C 0.131 3.869 23 C -0.148 4.148 24 C -0.091 4.091 25 C -0.129 4.129 26 C -0.099 4.099 27 C -0.144 4.144 28 C 0.058 3.942 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.016 0.984 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.404 0.596 38 H 0.038 0.962 39 H 0.018 0.982 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.202 0.798 43 H 0.146 0.854 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.151 0.849 47 H 0.120 0.880 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 0.287 23.355 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 N -0.317 5.317 4 C -0.379 4.379 5 H 0.087 0.913 6 C -0.237 4.237 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.236 1.236 10 H -0.218 1.218 11 H -0.193 1.193 12 C 0.034 3.966 13 C 0.316 3.684 14 O -0.469 6.469 15 N -0.390 5.390 16 C 0.018 3.982 17 C -0.070 4.070 18 C -0.237 4.237 19 C -0.130 4.130 20 N -0.145 5.145 21 N -0.107 5.107 22 C 0.039 3.961 23 C -0.169 4.169 24 C -0.109 4.109 25 C -0.148 4.148 26 C -0.117 4.117 27 C -0.164 4.164 28 C -0.085 4.085 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.239 0.761 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.219 0.781 43 H 0.164 0.836 44 H 0.180 0.820 45 H 0.176 0.824 46 H 0.169 0.831 47 H 0.138 0.862 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.838 1.235 23.168 25.607 hybrid contribution 0.618 0.754 -1.460 1.755 sum -10.219 1.989 21.708 24.076 Atomic orbital electron populations 1.22174 0.99374 0.99160 1.00147 1.21028 0.92249 0.85235 0.99961 1.44009 1.74442 1.10982 1.02284 1.19425 1.41963 0.89260 0.87242 0.91301 1.25521 1.01443 0.97435 0.99290 1.69817 1.56355 1.05675 1.24456 0.85384 0.76335 0.78247 0.81095 1.23555 1.21778 1.19332 1.20740 0.94325 0.95451 0.86110 1.22067 0.90803 0.77611 0.77941 1.90464 1.33879 1.63884 1.58624 1.45919 1.13317 1.55342 1.24470 1.20941 0.88287 0.94510 0.94430 1.19952 0.93627 0.99252 0.94171 1.20155 1.02020 0.95162 1.06382 1.24404 0.93274 0.97294 0.97981 1.77354 1.17058 1.06803 1.13297 1.45940 1.18857 1.09702 1.36221 1.18013 0.86707 0.96903 0.94434 1.21158 1.00955 0.95286 0.99499 1.21411 0.92493 1.00565 0.96471 1.21654 1.00597 0.92548 0.99954 1.21377 0.95885 0.99277 0.95170 1.21007 0.95639 0.98234 1.01564 1.22903 0.89452 0.96681 0.99427 0.92026 0.94628 0.96434 0.93306 0.91657 0.94672 0.88328 0.92177 0.76117 0.94375 0.96368 0.88143 0.89457 0.78099 0.83640 0.82002 0.82442 0.83108 0.86165 0.77619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.35 9.65 71.98 0.69 -5.65 16 2 C 0.14 5.88 6.44 86.38 0.56 6.43 16 3 N -0.60 -29.78 2.07 -706.33 -1.46 -31.24 16 4 C -0.25 -13.80 9.70 84.03 0.81 -12.98 16 5 H 0.07 3.76 7.84 -2.91 -0.02 3.74 16 6 C -0.04 -2.38 5.41 84.86 0.46 -1.92 16 7 N -0.92 -51.55 8.21 21.65 0.18 -51.37 16 8 Si 0.96 46.96 29.56 68.60 2.03 48.99 16 9 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.16 7.44 5.47 85.63 0.47 7.91 16 13 C 0.53 24.65 5.79 87.66 0.51 25.16 16 14 O -0.59 -33.37 13.89 -3.01 -0.04 -33.41 16 15 N -0.74 -26.34 5.56 -463.05 -2.57 -28.91 16 16 C 0.14 4.73 5.66 86.38 0.49 5.22 16 17 C -0.03 -0.70 5.81 29.85 0.17 -0.52 16 18 C -0.23 -5.46 5.35 -20.13 -0.11 -5.57 16 19 C 0.06 1.50 11.96 85.24 1.02 2.52 16 20 N -0.33 -9.53 11.87 -56.97 -0.68 -10.20 16 21 N -0.33 -8.56 3.80 -187.77 -0.71 -9.27 16 22 C 0.13 2.92 6.69 38.09 0.25 3.18 16 23 C -0.15 -2.37 9.46 22.38 0.21 -2.16 16 24 C -0.09 -1.04 10.04 22.25 0.22 -0.81 16 25 C -0.13 -1.41 10.04 22.29 0.22 -1.19 16 26 C -0.10 -1.42 10.04 22.25 0.22 -1.19 16 27 C -0.14 -3.03 9.66 22.38 0.22 -2.81 16 28 C 0.06 1.28 10.71 83.50 0.89 2.18 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.03 1.66 6.38 -2.39 -0.02 1.64 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.07 2.32 7.84 -2.39 -0.02 2.30 16 34 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.10 4.87 6.24 -2.39 -0.01 4.86 16 36 H 0.06 2.26 7.86 -2.39 -0.02 2.25 16 37 H 0.40 11.50 8.47 -92.71 -0.79 10.71 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.20 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.15 1.74 6.74 -2.91 -0.02 1.72 16 44 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 46 H 0.15 1.41 8.06 -2.92 -0.02 1.39 16 47 H 0.12 2.80 7.70 -2.91 -0.02 2.78 16 48 H 0.21 3.02 7.04 -2.91 -0.02 3.00 16 Total: -1.00 -78.39 397.74 4.24 -74.14 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.18 Total: 23.48 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 7.32 Total: 17.79 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -5.25 Total: -130.99 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.04 Total: -33.41 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -78.39 4.24 -74.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121026343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.513 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds