Wall clock time and date at job start Wed Apr 1 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36090 * 126.30163 * 2 1 4 4 N 1.30072 * 110.12614 * 179.74596 * 3 2 1 5 5 C 1.35862 * 109.55709 * 0.41792 * 4 3 2 6 6 C 1.39411 * 133.51606 * 179.88151 * 5 4 3 7 7 C 1.39119 * 119.51248 * 179.68055 * 6 5 4 8 8 C 1.47675 * 119.90746 * 179.97438 * 7 6 5 9 9 O 1.21581 * 119.99651 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00648 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00690 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47569 * 180.02562 * 11 10 8 13 13 C 1.53036 * 109.46104 * 295.03204 * 12 11 10 14 14 C 1.53196 * 109.31242 * 178.59798 * 13 12 11 15 15 N 1.46927 * 108.76173 * 54.65376 * 14 13 12 16 16 C 1.36942 * 120.62616 * 126.40849 * 15 14 13 17 17 H 1.07996 * 119.99970 * 332.60013 * 16 15 14 18 18 C 1.38812 * 119.99760 * 152.60643 * 16 15 14 19 19 N 1.31625 * 120.00011 * 159.34049 * 18 16 15 20 20 Si 1.86798 * 120.00194 * 339.34205 * 18 16 15 21 21 H 1.48505 * 109.47406 * 92.94283 * 20 18 16 22 22 H 1.48501 * 109.47166 * 212.94551 * 20 18 16 23 23 H 1.48501 * 109.46972 * 332.94607 * 20 18 16 24 24 C 1.46927 * 118.74222 * 306.37993 * 15 14 13 25 25 C 1.53041 * 109.46123 * 174.97191 * 12 11 10 26 26 C 1.40139 * 120.18882 * 359.97438 * 7 6 5 27 27 C 1.36431 * 120.46251 * 0.02562 * 26 7 6 28 28 C 1.37794 * 126.30344 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47155 * 270.00397 * 1 2 3 30 30 H 1.09001 * 109.47310 * 29.99650 * 1 2 3 31 31 H 1.08998 * 109.47263 * 150.00100 * 1 2 3 32 32 H 1.07993 * 124.93981 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.24347 * 359.66219 * 6 5 4 34 34 H 0.97006 * 119.99884 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47025 * 300.00354 * 11 10 8 36 36 H 1.09001 * 109.47208 * 60.00208 * 11 10 8 37 37 H 1.09002 * 109.45428 * 55.00491 * 12 11 10 38 38 H 1.08998 * 109.49637 * 298.56373 * 13 12 11 39 39 H 1.08996 * 109.49711 * 58.65806 * 13 12 11 40 40 H 1.08998 * 109.59910 * 294.86853 * 14 13 12 41 41 H 1.08996 * 109.70317 * 174.50220 * 14 13 12 42 42 H 0.97001 * 119.99496 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.58488 * 293.82933 * 24 15 14 44 44 H 1.09004 * 109.70217 * 173.46681 * 24 15 14 45 45 H 1.09004 * 109.50030 * 301.34002 * 25 12 11 46 46 H 1.09005 * 109.49427 * 61.40414 * 25 12 11 47 47 H 1.08006 * 119.76802 * 179.97438 * 26 7 6 48 48 H 1.07996 * 119.92501 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0968 0.0000 4 7 3.5199 0.7344 0.0054 5 6 3.6001 -0.6218 -0.0001 6 6 4.6660 -1.5204 -0.0001 7 6 4.4096 -2.8878 -0.0001 8 6 5.5320 -3.8474 -0.0007 9 8 6.6782 -3.4421 -0.0008 10 7 5.2859 -5.1725 -0.0002 11 6 6.3994 -6.1244 -0.0003 12 6 5.8497 -7.5523 -0.0002 13 6 5.0969 -7.8088 1.3072 14 6 4.5183 -9.2272 1.2888 15 7 5.6064 -10.1780 1.0227 16 6 5.8282 -11.2370 1.8621 17 1 5.5492 -11.1686 2.9031 18 6 6.4119 -12.3984 1.3748 19 7 6.9935 -13.2402 2.2028 20 14 6.3721 -12.7666 -0.4561 21 1 7.6096 -12.2479 -1.0924 22 1 6.2863 -14.2344 -0.6641 23 1 5.1887 -12.1100 -1.0674 24 6 6.4514 -9.9713 -0.1613 25 6 7.0080 -8.5445 -0.1267 26 6 3.0891 -3.3571 0.0005 27 6 2.0435 -2.4807 0.0006 28 6 2.2808 -1.1105 -0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9234 2.1193 -0.0004 33 1 5.6833 -1.1577 -0.0005 34 1 4.3713 -5.4959 0.0002 35 1 7.0092 -5.9702 -0.8905 36 1 7.0097 -5.9697 0.8895 37 1 5.1692 -7.6794 -0.8421 38 1 5.7828 -7.7063 2.1481 39 1 4.2866 -7.0868 1.4081 40 1 3.7653 -9.3048 0.5045 41 1 4.0648 -9.4516 2.2542 42 1 7.4016 -14.0515 1.8622 43 1 5.8560 -10.1095 -1.0637 44 1 7.2752 -10.6852 -0.1540 45 1 7.5581 -8.3463 -1.0467 46 1 7.6761 -8.4346 0.7275 47 1 2.8978 -4.4201 0.0001 48 1 1.0294 -2.8520 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130346492.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:38 Heat of formation + Delta-G solvation = 38.373384 kcal Electronic energy + Delta-G solvation = -28787.203007 eV Core-core repulsion = 24842.361841 eV Total energy + Delta-G solvation = -3944.841166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.17974 -41.03476 -39.58309 -37.95106 -36.51703 -35.26105 -34.53410 -32.94565 -31.86209 -31.66390 -30.66027 -28.58261 -27.82297 -25.83849 -24.73972 -24.02282 -23.78664 -22.73603 -21.71391 -21.57306 -20.81497 -19.06961 -18.63578 -18.14608 -17.76287 -17.12816 -16.92431 -16.81802 -16.37822 -15.88011 -15.80010 -15.32821 -15.14414 -15.10420 -15.02344 -14.74177 -14.62988 -14.37825 -14.09717 -13.99647 -13.89672 -13.62563 -13.38916 -13.36715 -12.94856 -12.60737 -12.57953 -12.51645 -12.22135 -12.09395 -11.71888 -11.56243 -11.40448 -11.32815 -11.17562 -11.08795 -10.99845 -10.64547 -10.14655 -9.46376 -9.20351 -8.88974 -8.14241 -5.45107 -0.22240 0.04255 1.32517 1.42803 1.52370 1.68063 1.70058 1.94083 2.10524 2.44187 2.85507 3.08367 3.25344 3.40777 3.56997 3.73760 3.80771 3.89882 3.90441 3.98080 4.01238 4.24959 4.32882 4.40800 4.42010 4.47070 4.50478 4.58208 4.64272 4.66729 4.76278 4.78338 4.80824 4.92009 5.01912 5.04718 5.12672 5.19875 5.24114 5.24400 5.29554 5.31420 5.34453 5.41264 5.63039 5.69844 5.90202 6.15348 6.15998 6.53657 6.81257 6.96272 7.19359 7.67071 8.06843 9.05816 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.001953 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.559161 B =14333.849269 C =14926.484083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.491 5.491 3 C 0.272 3.728 4 N -0.542 5.542 5 C 0.004 3.996 6 C -0.021 4.021 7 C -0.152 4.152 8 C 0.559 3.441 9 O -0.587 6.587 10 N -0.705 5.705 11 C 0.134 3.866 12 C -0.079 4.079 13 C -0.120 4.120 14 C 0.142 3.858 15 N -0.622 5.622 16 C -0.246 4.246 17 H 0.049 0.951 18 C -0.041 4.041 19 N -0.960 5.960 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.314 1.314 23 H -0.256 1.256 24 C 0.120 3.880 25 C -0.122 4.122 26 C -0.069 4.069 27 C -0.103 4.103 28 C 0.060 3.940 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.260 0.740 33 H 0.117 0.883 34 H 0.415 0.585 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.260 0.740 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.166 0.834 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.851 29.933 -8.679 36.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.180 5.180 3 C -0.014 4.014 4 N -0.261 5.261 5 C -0.113 4.113 6 C -0.041 4.041 7 C -0.158 4.158 8 C 0.348 3.652 9 O -0.469 6.469 10 N -0.357 5.357 11 C 0.010 3.990 12 C -0.098 4.098 13 C -0.158 4.158 14 C 0.017 3.983 15 N -0.347 5.347 16 C -0.376 4.376 17 H 0.066 0.934 18 C -0.236 4.236 19 N -0.607 5.607 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.243 1.243 23 H -0.180 1.180 24 C -0.005 4.005 25 C -0.161 4.161 26 C -0.089 4.089 27 C -0.123 4.123 28 C -0.052 4.052 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.276 0.724 33 H 0.135 0.865 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.183 0.817 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.460 30.597 -8.644 36.765 hybrid contribution -0.191 -1.365 -0.265 1.403 sum -18.651 29.232 -8.909 35.801 Atomic orbital electron populations 1.22422 0.72688 1.06833 1.05135 1.45659 1.09160 1.04367 1.58788 1.26312 0.84070 0.95198 0.95798 1.70451 1.21018 1.10881 1.23759 1.19079 0.92999 0.90893 1.08341 1.20313 0.97822 0.91046 0.94948 1.19501 0.94012 0.92262 1.09995 1.18416 0.88283 0.82935 0.75551 1.90764 1.24259 1.79587 1.52253 1.45751 1.11197 1.04636 1.74141 1.21325 0.88781 0.87189 1.01729 1.21185 0.97512 0.91778 0.99297 1.21975 1.00080 0.97105 0.96689 1.21145 0.89153 0.88598 0.99372 1.44514 1.33822 1.28472 1.27884 1.18868 1.36004 0.91857 0.90831 0.93358 1.25961 0.99620 0.96243 1.01728 1.69989 1.39919 1.14137 1.36636 0.85853 0.78955 0.75162 0.82098 1.20349 1.24309 1.17989 1.21385 0.93587 0.96268 0.89225 1.21895 0.97682 0.94522 1.02022 1.21009 0.89495 1.01327 0.97112 1.19959 1.01394 0.87628 1.03342 1.19316 0.90755 0.90942 1.04229 0.89274 0.86449 0.88567 0.72418 0.86450 0.74600 0.91477 0.92796 0.88789 0.93695 0.88965 0.93808 0.92970 0.93112 0.94325 0.93729 0.90020 0.93095 0.81713 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.07 11.17 127.77 1.43 1.36 16 2 N -0.49 -4.61 3.20 -543.47 -1.74 -6.35 16 3 C 0.27 3.05 12.50 180.05 2.25 5.30 16 4 N -0.54 -11.91 11.28 -192.08 -2.17 -14.07 16 5 C 0.00 0.10 7.22 39.40 0.28 0.38 16 6 C -0.02 -0.53 9.64 22.76 0.22 -0.32 16 7 C -0.15 -3.36 5.87 -20.11 -0.12 -3.48 16 8 C 0.56 14.73 7.76 86.74 0.67 15.41 16 9 O -0.59 -20.83 16.32 -3.97 -0.06 -20.89 16 10 N -0.70 -14.54 5.22 -466.14 -2.43 -16.98 16 11 C 0.13 3.24 5.06 86.38 0.44 3.67 16 12 C -0.08 -1.97 2.19 -10.77 -0.02 -1.99 16 13 C -0.12 -3.22 5.25 30.67 0.16 -3.06 16 14 C 0.14 4.93 6.52 86.36 0.56 5.50 16 15 N -0.62 -28.23 2.77 -699.09 -1.94 -30.16 16 16 C -0.25 -13.89 10.04 84.03 0.84 -13.05 16 17 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 18 C -0.04 -2.42 5.23 84.86 0.44 -1.98 16 19 N -0.96 -61.01 13.97 21.65 0.30 -60.71 16 20 Si 0.95 46.41 24.35 68.60 1.67 48.08 16 21 H -0.28 -12.83 6.62 99.48 0.66 -12.18 16 22 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 23 H -0.26 -11.67 6.63 99.48 0.66 -11.01 16 24 C 0.12 4.87 4.20 86.36 0.36 5.23 16 25 C -0.12 -3.86 5.36 30.67 0.16 -3.69 16 26 C -0.07 -0.96 9.47 22.31 0.21 -0.75 16 27 C -0.10 -1.20 9.97 22.05 0.22 -0.98 16 28 C 0.06 0.95 6.87 39.00 0.27 1.22 16 29 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.26 0.04 8.06 -2.91 -0.02 0.02 16 33 H 0.12 3.48 7.63 -2.91 -0.02 3.45 16 34 H 0.42 5.71 5.65 -92.70 -0.52 5.19 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.76 7.15 -2.39 -0.02 1.74 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 42 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.04 1.47 7.07 -2.39 -0.02 1.45 16 44 H 0.04 2.06 4.50 -2.39 -0.01 2.05 16 45 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.17 1.15 6.36 -2.91 -0.02 1.14 16 48 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -86.78 381.96 2.38 -84.40 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.36 Total: 7.91 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 8.39 Total: 8.77 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -7.97 Total: -128.27 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -86.78 2.38 -84.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130346492.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.773 kcal (2) G-P(sol) polarization free energy of solvation -86.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds