Wall clock time and date at job start Wed Apr 1 2020 04:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35970 * 126.06667 * 2 1 4 4 C 1.35708 * 107.55093 * 180.10472 * 3 2 1 5 5 N 1.40794 * 126.06809 * 179.89843 * 4 3 2 6 6 C 1.46954 * 110.99881 * 179.71232 * 5 4 3 7 7 C 1.53053 * 109.36514 * 183.18886 * 6 5 4 8 8 N 1.46955 * 109.36406 * 301.60162 * 7 6 5 9 9 C 1.46902 * 111.00422 * 183.18739 * 8 7 6 10 10 C 1.50696 * 109.47653 * 169.99685 * 9 8 7 11 11 C 1.38300 * 119.92953 * 269.72940 * 10 9 8 12 12 C 1.38100 * 120.06481 * 179.72311 * 11 10 9 13 13 C 1.38879 * 119.93523 * 0.54683 * 12 11 10 14 14 O 1.35750 * 120.07634 * 179.74671 * 13 12 11 15 15 C 1.34827 * 117.00361 * 174.44218 * 14 13 12 16 16 H 1.08002 * 119.99776 * 5.05667 * 15 14 13 17 17 C 1.38644 * 119.99995 * 185.05608 * 15 14 13 18 18 N 1.31558 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46760 * 90.00508 * 19 17 15 21 21 H 1.48497 * 109.47020 * 209.99898 * 19 17 15 22 22 H 1.48496 * 109.47118 * 330.00051 * 19 17 15 23 23 C 1.38885 * 119.85554 * 359.72716 * 13 12 11 24 24 C 1.38100 * 119.93438 * 359.97438 * 23 13 12 25 25 C 1.46954 * 110.88258 * 59.31864 * 8 7 6 26 26 C 1.46955 * 111.00082 * 303.51441 * 5 4 3 27 27 C 1.40221 * 107.86093 * 359.63548 * 4 3 2 28 28 N 1.30859 * 108.36645 * 0.22650 * 27 4 3 29 29 H 1.09000 * 109.46693 * 270.28354 * 1 2 3 30 30 H 1.08996 * 109.47212 * 30.28245 * 1 2 3 31 31 H 1.08995 * 109.47181 * 150.28839 * 1 2 3 32 32 H 1.08001 * 126.22687 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.48860 * 63.22566 * 6 5 4 34 34 H 1.08993 * 109.51096 * 303.16672 * 6 5 4 35 35 H 1.08995 * 109.49280 * 181.63258 * 7 6 5 36 36 H 1.09001 * 109.48833 * 61.56205 * 7 6 5 37 37 H 1.09004 * 109.47197 * 290.00366 * 9 8 7 38 38 H 1.09006 * 109.46647 * 49.99525 * 9 8 7 39 39 H 1.07999 * 119.96721 * 359.97438 * 11 10 9 40 40 H 1.08003 * 120.03649 * 180.27282 * 12 11 10 41 41 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.02888 * 179.97438 * 23 13 12 43 43 H 1.07999 * 119.96459 * 180.02562 * 24 23 13 44 44 H 1.08993 * 109.49319 * 60.64891 * 25 8 7 45 45 H 1.08999 * 109.49010 * 180.71524 * 25 8 7 46 46 H 1.09003 * 109.49105 * 296.77781 * 26 5 4 47 47 H 1.09000 * 109.49178 * 56.82101 * 26 5 4 48 48 H 1.08001 * 125.81373 * 180.23082 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5524 0.6681 -0.0024 5 7 4.6998 1.4840 -0.0052 6 6 5.9240 0.6712 -0.0003 7 6 7.1442 1.5918 0.0767 8 7 7.1321 2.5137 -1.0676 9 6 8.3293 3.3650 -1.0707 10 6 8.4076 4.1173 -2.3741 11 6 9.0842 3.5683 -3.4481 12 6 9.1528 4.2526 -4.6456 13 6 8.5513 5.4984 -4.7673 14 8 8.6213 6.1760 -5.9416 15 6 7.9203 7.3244 -6.0286 16 1 7.4039 7.7087 -5.1614 17 6 7.8624 8.0118 -7.2312 18 7 8.4910 7.5434 -8.2876 19 14 6.8905 9.6026 -7.3518 20 1 7.7754 10.7492 -7.0243 21 1 6.3675 9.7596 -8.7328 22 1 5.7561 9.5634 -6.3944 23 6 7.8774 6.0495 -3.6851 24 6 7.8070 5.3575 -2.4921 25 6 5.9079 3.3266 -1.0725 26 6 4.6877 2.4059 -1.1496 27 6 3.5364 -0.7340 0.0046 28 7 2.2898 -1.1321 0.0061 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5093 32 1 1.9371 2.1279 -0.0004 33 1 5.9717 0.0801 -0.9149 34 1 5.9156 0.0056 0.8628 35 1 8.0543 0.9925 0.0513 36 1 7.1106 2.1633 1.0043 37 1 8.2730 4.0741 -0.2447 38 1 9.2174 2.7434 -0.9560 39 1 9.5559 2.6015 -3.3514 40 1 9.6775 3.8215 -5.4854 41 1 8.4502 8.0242 -9.1291 42 1 7.4090 7.0184 -3.7766 43 1 7.2828 5.7854 -1.6504 44 1 5.8602 3.9177 -0.1581 45 1 5.9165 3.9919 -1.9359 46 1 4.7213 1.8345 -2.0773 47 1 3.7775 3.0051 -1.1244 48 1 4.4049 -1.3759 0.0083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266917983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:16 Heat of formation + Delta-G solvation = 102.850553 kcal Electronic energy + Delta-G solvation = -28820.035562 eV Core-core repulsion = 24877.990336 eV Total energy + Delta-G solvation = -3942.045226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.48091 -39.48436 -38.73039 -36.82976 -35.22795 -33.11449 -32.31263 -31.25026 -30.52985 -30.12849 -29.32026 -27.24261 -25.93009 -25.28158 -23.88430 -23.44528 -21.93939 -21.03859 -20.80081 -20.29372 -19.62059 -17.96466 -17.76687 -16.93097 -15.92586 -15.72818 -15.23812 -15.15985 -14.96225 -14.85978 -14.57246 -14.45550 -14.27866 -14.14980 -13.76870 -13.53748 -13.35001 -13.10442 -12.89328 -12.80038 -12.66549 -12.57343 -12.10657 -11.84675 -11.51232 -11.44097 -11.34450 -11.27644 -11.01380 -10.94799 -10.67064 -10.61295 -10.47966 -10.41021 -9.77919 -9.60728 -9.32051 -8.83099 -8.25841 -8.12892 -7.74835 -7.15803 -6.44589 -4.03449 1.60338 2.21829 2.23882 2.29706 2.52387 3.12113 3.13103 3.17939 3.72059 3.96077 3.99584 4.36005 4.56900 4.64897 4.78854 4.80817 4.85168 4.97579 5.03812 5.05077 5.10476 5.18850 5.29494 5.33295 5.35545 5.40220 5.45425 5.52483 5.57023 5.68754 5.75878 5.79692 5.81447 5.91071 5.96261 6.02483 6.14636 6.23348 6.44281 6.64071 6.72532 6.82444 6.91562 7.02825 7.06143 7.17052 7.20497 7.29369 7.41875 7.43346 7.46066 7.84845 8.00458 9.01096 9.71929 10.73489 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.002208 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.435340 B =12678.645914 C =14111.159772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.378 5.378 3 C 0.032 3.968 4 C -0.039 4.039 5 N -0.463 5.463 6 C 0.060 3.940 7 C 0.056 3.944 8 N -0.534 5.534 9 C 0.114 3.886 10 C -0.178 4.178 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.234 4.234 24 C -0.066 4.066 25 C 0.055 3.945 26 C 0.061 3.939 27 C 0.024 3.976 28 N -0.286 5.286 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.038 0.962 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 -12.462 18.322 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.164 5.164 3 C -0.114 4.114 4 C -0.145 4.145 5 N -0.183 5.183 6 C -0.068 4.068 7 C -0.072 4.072 8 N -0.259 5.259 9 C -0.012 4.012 10 C -0.180 4.180 11 C -0.071 4.071 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.085 4.085 25 C -0.073 4.073 26 C -0.065 4.065 27 C -0.164 4.164 28 N -0.108 5.108 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.789 -13.398 17.854 25.244 hybrid contribution -0.029 1.654 0.032 1.655 sum -11.819 -11.744 17.886 24.444 Atomic orbital electron populations 1.21812 0.73928 1.04485 1.03219 1.48411 1.06401 1.03421 1.58128 1.22028 0.89894 0.93196 1.06273 1.19012 0.91029 0.91050 1.13431 1.59717 0.99735 1.17615 1.41184 1.22209 0.88180 0.95001 1.01392 1.22152 0.97490 0.95186 0.92404 1.62216 1.02327 1.19917 1.41425 1.20775 0.91982 0.93937 0.94513 1.19059 1.06767 0.96397 0.95734 1.20449 0.97220 0.97769 0.91704 1.20219 1.07766 0.94702 0.98669 1.19400 0.92628 0.91056 0.86753 1.83979 1.61248 1.34139 1.28831 1.21308 1.29766 0.97847 0.97813 0.89121 1.25282 0.97511 0.99525 0.94232 1.70038 1.40063 1.38723 1.00961 0.85725 0.79319 0.80315 0.78144 1.19902 1.20271 1.19222 1.21116 1.07924 1.02520 0.93800 1.20592 0.97568 0.94020 0.96328 1.22226 0.88407 0.94923 1.01711 1.22312 0.98402 0.94525 0.91305 1.23968 0.95479 0.94252 1.02736 1.77253 1.01360 1.08703 1.23469 0.90914 0.89442 0.89359 0.80823 0.93144 0.90151 0.90112 0.94205 0.94891 0.90792 0.87116 0.86632 0.92044 0.85697 0.87931 0.94374 0.88922 0.93292 0.90467 0.80144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 11.48 59.85 0.69 1.25 16 2 N -0.38 -3.63 4.04 -67.79 -0.27 -3.91 16 3 C 0.03 0.31 10.88 -16.62 -0.18 0.13 16 4 C -0.04 -0.43 5.74 -83.90 -0.48 -0.91 16 5 N -0.46 -5.05 4.83 -171.15 -0.83 -5.87 16 6 C 0.06 0.59 4.54 -3.77 -0.02 0.57 16 7 C 0.06 0.57 5.61 -3.77 -0.02 0.55 16 8 N -0.53 -6.73 4.70 -235.91 -1.11 -7.84 16 9 C 0.11 1.51 5.12 -4.98 -0.03 1.48 16 10 C -0.18 -2.95 4.90 -104.58 -0.51 -3.46 16 11 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 12 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16 13 C 0.16 3.73 6.65 -39.10 -0.26 3.47 16 14 O -0.18 -5.09 9.76 0.06 0.00 -5.09 16 15 C -0.39 -10.88 9.49 30.88 0.29 -10.59 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.29 13.67 55.48 0.76 -24.54 16 19 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.23 -4.99 9.17 -39.39 -0.36 -5.36 16 24 C -0.07 -1.17 7.91 -39.61 -0.31 -1.49 16 25 C 0.06 0.69 5.25 -3.77 -0.02 0.67 16 26 C 0.06 0.70 5.47 -3.77 -0.02 0.68 16 27 C 0.02 0.25 10.79 -17.22 -0.19 0.07 16 28 N -0.29 -3.35 12.57 30.70 0.39 -2.96 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.17 1.24 7.92 -52.49 -0.42 0.83 16 33 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.08 0.67 7.63 -51.93 -0.40 0.27 16 35 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 38 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 43 H 0.10 1.57 7.99 -52.49 -0.42 1.15 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 1.32 5.94 -51.93 -0.31 1.01 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.79 7.56 -51.93 -0.39 0.39 16 48 H 0.18 1.54 7.26 -52.49 -0.38 1.16 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -32.94 389.10 -9.58 -42.52 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.07 Total: 4.17 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.29 Total: -17.75 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -1.06 Total: -45.12 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.94 -9.58 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266917983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.374 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds