Wall clock time and date at job start Wed Apr 1 2020 04:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35970 * 126.06667 * 2 1 4 4 C 1.35708 * 107.55093 * 180.10472 * 3 2 1 5 5 N 1.40794 * 126.06809 * 179.89843 * 4 3 2 6 6 C 1.46954 * 110.99881 * 179.71232 * 5 4 3 7 7 C 1.53053 * 109.36514 * 183.18886 * 6 5 4 8 8 N 1.46955 * 109.36406 * 301.60162 * 7 6 5 9 9 C 1.46902 * 111.00422 * 183.18739 * 8 7 6 10 10 C 1.50696 * 109.47653 * 169.99685 * 9 8 7 11 11 C 1.38300 * 119.92953 * 269.72940 * 10 9 8 12 12 C 1.38100 * 120.06481 * 179.72311 * 11 10 9 13 13 C 1.38879 * 119.93523 * 0.54683 * 12 11 10 14 14 O 1.35750 * 120.07634 * 179.74671 * 13 12 11 15 15 C 1.34827 * 117.00361 * 174.44218 * 14 13 12 16 16 H 1.08002 * 119.99776 * 5.05667 * 15 14 13 17 17 C 1.38644 * 119.99995 * 185.05608 * 15 14 13 18 18 N 1.31558 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46760 * 90.00508 * 19 17 15 21 21 H 1.48497 * 109.47020 * 209.99898 * 19 17 15 22 22 H 1.48496 * 109.47118 * 330.00051 * 19 17 15 23 23 C 1.38885 * 119.85554 * 359.72716 * 13 12 11 24 24 C 1.38100 * 119.93438 * 359.97438 * 23 13 12 25 25 C 1.46954 * 110.88258 * 59.31864 * 8 7 6 26 26 C 1.46955 * 111.00082 * 303.51441 * 5 4 3 27 27 C 1.40221 * 107.86093 * 359.63548 * 4 3 2 28 28 N 1.30859 * 108.36645 * 0.22650 * 27 4 3 29 29 H 1.09000 * 109.46693 * 270.28354 * 1 2 3 30 30 H 1.08996 * 109.47212 * 30.28245 * 1 2 3 31 31 H 1.08995 * 109.47181 * 150.28839 * 1 2 3 32 32 H 1.08001 * 126.22687 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.48860 * 63.22566 * 6 5 4 34 34 H 1.08993 * 109.51096 * 303.16672 * 6 5 4 35 35 H 1.08995 * 109.49280 * 181.63258 * 7 6 5 36 36 H 1.09001 * 109.48833 * 61.56205 * 7 6 5 37 37 H 1.09004 * 109.47197 * 290.00366 * 9 8 7 38 38 H 1.09006 * 109.46647 * 49.99525 * 9 8 7 39 39 H 1.07999 * 119.96721 * 359.97438 * 11 10 9 40 40 H 1.08003 * 120.03649 * 180.27282 * 12 11 10 41 41 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.02888 * 179.97438 * 23 13 12 43 43 H 1.07999 * 119.96459 * 180.02562 * 24 23 13 44 44 H 1.08993 * 109.49319 * 60.64891 * 25 8 7 45 45 H 1.08999 * 109.49010 * 180.71524 * 25 8 7 46 46 H 1.09003 * 109.49105 * 296.77781 * 26 5 4 47 47 H 1.09000 * 109.49178 * 56.82101 * 26 5 4 48 48 H 1.08001 * 125.81373 * 180.23082 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5524 0.6681 -0.0024 5 7 4.6998 1.4840 -0.0052 6 6 5.9240 0.6712 -0.0003 7 6 7.1442 1.5918 0.0767 8 7 7.1321 2.5137 -1.0676 9 6 8.3293 3.3650 -1.0707 10 6 8.4076 4.1173 -2.3741 11 6 9.0842 3.5683 -3.4481 12 6 9.1528 4.2526 -4.6456 13 6 8.5513 5.4984 -4.7673 14 8 8.6213 6.1760 -5.9416 15 6 7.9203 7.3244 -6.0286 16 1 7.4039 7.7087 -5.1614 17 6 7.8624 8.0118 -7.2312 18 7 8.4910 7.5434 -8.2876 19 14 6.8905 9.6026 -7.3518 20 1 7.7754 10.7492 -7.0243 21 1 6.3675 9.7596 -8.7328 22 1 5.7561 9.5634 -6.3944 23 6 7.8774 6.0495 -3.6851 24 6 7.8070 5.3575 -2.4921 25 6 5.9079 3.3266 -1.0725 26 6 4.6877 2.4059 -1.1496 27 6 3.5364 -0.7340 0.0046 28 7 2.2898 -1.1321 0.0061 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5093 32 1 1.9371 2.1279 -0.0004 33 1 5.9717 0.0801 -0.9149 34 1 5.9156 0.0056 0.8628 35 1 8.0543 0.9925 0.0513 36 1 7.1106 2.1633 1.0043 37 1 8.2730 4.0741 -0.2447 38 1 9.2174 2.7434 -0.9560 39 1 9.5559 2.6015 -3.3514 40 1 9.6775 3.8215 -5.4854 41 1 8.4502 8.0242 -9.1291 42 1 7.4090 7.0184 -3.7766 43 1 7.2828 5.7854 -1.6504 44 1 5.8602 3.9177 -0.1581 45 1 5.9165 3.9919 -1.9359 46 1 4.7213 1.8345 -2.0773 47 1 3.7775 3.0051 -1.1244 48 1 4.4049 -1.3759 0.0083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266917983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:14 Heat of formation + Delta-G solvation = 80.334654 kcal Electronic energy + Delta-G solvation = -28821.011925 eV Core-core repulsion = 24877.990336 eV Total energy + Delta-G solvation = -3943.021589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.21842 -40.88015 -39.97519 -38.34986 -36.29860 -34.29580 -33.76421 -32.22491 -31.75916 -31.57168 -30.29706 -28.20477 -27.35940 -26.57743 -24.74165 -24.60170 -23.53160 -22.04863 -21.63251 -21.53559 -20.45604 -19.80404 -18.78331 -18.49922 -16.77027 -16.52463 -16.48146 -16.34475 -16.20223 -15.91387 -15.76659 -15.54754 -15.46825 -15.26053 -15.16716 -14.94060 -14.53783 -14.30273 -14.10473 -13.69687 -13.58338 -13.45252 -13.38223 -13.12604 -12.92427 -12.71545 -12.50257 -12.37775 -12.23540 -12.18460 -12.12147 -11.87298 -11.73467 -11.59432 -11.13903 -10.77536 -10.59058 -10.31383 -9.72347 -9.22240 -8.84899 -8.52841 -8.45470 -6.13450 0.64182 0.71629 0.88110 1.35353 1.44713 1.52976 1.61563 1.75774 2.18734 2.76259 2.95545 3.05498 3.34893 3.56148 3.76845 3.88390 3.96585 4.00525 4.09482 4.19749 4.24214 4.27206 4.35507 4.37893 4.45724 4.50549 4.53489 4.63340 4.65815 4.68490 4.71286 4.80887 4.81807 4.84438 4.90786 4.97983 5.04285 5.11778 5.13119 5.17847 5.34628 5.37819 5.61521 5.74705 5.83827 5.92749 6.05027 6.07172 6.14902 6.23066 6.30035 6.39563 6.69133 6.99367 7.81526 8.77923 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.002208 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.435340 B =12678.645914 C =14111.159772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.380 5.380 3 C 0.036 3.964 4 C -0.062 4.062 5 N -0.462 5.462 6 C 0.060 3.940 7 C 0.060 3.940 8 N -0.546 5.546 9 C 0.117 3.883 10 C -0.151 4.151 11 C -0.048 4.048 12 C -0.207 4.207 13 C 0.113 3.887 14 O -0.235 6.235 15 C -0.411 4.411 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.242 4.242 24 C -0.061 4.061 25 C 0.059 3.941 26 C 0.067 3.933 27 C 0.017 3.983 28 N -0.319 5.319 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.198 0.802 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.272 0.728 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.027 0.973 47 H 0.088 0.912 48 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 -12.926 21.748 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.165 5.165 3 C -0.111 4.111 4 C -0.168 4.168 5 N -0.182 5.182 6 C -0.067 4.067 7 C -0.068 4.068 8 N -0.272 5.272 9 C -0.009 4.009 10 C -0.152 4.152 11 C -0.066 4.066 12 C -0.226 4.226 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.487 4.487 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.176 1.176 23 C -0.261 4.261 24 C -0.079 4.079 25 C -0.069 4.069 26 C -0.060 4.060 27 C -0.170 4.170 28 N -0.142 5.142 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.215 0.785 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.162 0.838 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.152 0.848 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.106 0.894 48 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.119 -13.913 21.346 28.659 hybrid contribution 0.342 1.521 -0.734 1.723 sum -12.777 -12.392 20.611 27.233 Atomic orbital electron populations 1.22156 0.71762 1.05795 1.04563 1.48799 1.07712 1.02897 1.57083 1.22475 0.89727 0.94195 1.04699 1.19183 0.91520 0.91163 1.14926 1.59780 1.00149 1.17811 1.40415 1.22252 0.87770 0.94999 1.01693 1.22210 0.98388 0.94772 0.91418 1.62146 1.01904 1.19968 1.43142 1.20794 0.93313 0.94491 0.92340 1.19574 1.03184 0.95568 0.96857 1.20834 0.96706 0.98611 0.90460 1.20461 1.07771 0.94234 1.00162 1.19941 0.94780 0.92356 0.86653 1.83942 1.63573 1.35318 1.31309 1.21803 1.30065 0.98242 0.98622 0.88124 1.26592 0.98610 1.03513 0.93495 1.70190 1.42938 1.41121 1.01809 0.84594 0.77997 0.75142 0.78525 1.18804 1.19692 1.17573 1.21207 1.07744 1.02613 0.94538 1.20913 0.97065 0.94175 0.95746 1.22144 0.88883 0.94911 1.01004 1.22223 0.98549 0.94478 0.90754 1.24234 0.95760 0.94653 1.02389 1.77199 1.02055 1.10132 1.24827 0.89528 0.87067 0.89179 0.78525 0.94071 0.88515 0.88342 0.93744 0.93418 0.88633 0.83775 0.87257 0.91918 0.86533 0.84759 0.93623 0.91013 0.95486 0.89367 0.78895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.48 127.77 1.47 2.27 16 2 N -0.38 -6.62 4.04 -368.38 -1.49 -8.11 16 3 C 0.04 0.62 10.88 83.47 0.91 1.53 16 4 C -0.06 -1.23 5.74 37.60 0.22 -1.01 16 5 N -0.46 -8.95 4.83 -695.38 -3.36 -12.31 16 6 C 0.06 1.02 4.54 86.31 0.39 1.41 16 7 C 0.06 0.99 5.61 86.31 0.48 1.48 16 8 N -0.55 -11.83 4.70 -900.29 -4.23 -16.06 16 9 C 0.12 2.57 5.12 85.56 0.44 3.01 16 10 C -0.15 -4.54 4.90 -19.84 -0.10 -4.64 16 11 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 12 C -0.21 -8.91 9.99 22.39 0.22 -8.68 16 13 C 0.11 5.66 6.65 22.58 0.15 5.81 16 14 O -0.23 -14.28 9.76 -22.71 -0.22 -14.50 16 15 C -0.41 -24.08 9.49 67.92 0.64 -23.44 16 16 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 17 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 18 N -0.92 -57.11 13.67 21.61 0.30 -56.82 16 19 Si 1.02 42.97 29.55 68.60 2.03 44.99 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 23 C -0.24 -10.43 9.17 22.39 0.21 -10.23 16 24 C -0.06 -2.02 7.91 22.25 0.18 -1.85 16 25 C 0.06 1.31 5.25 86.31 0.45 1.76 16 26 C 0.07 1.41 5.47 86.31 0.47 1.88 16 27 C 0.02 0.34 10.79 85.32 0.92 1.26 16 28 N -0.32 -7.13 12.57 -56.78 -0.71 -7.85 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.20 2.23 7.92 -2.91 -0.02 2.21 16 33 H 0.04 0.78 8.00 -2.38 -0.02 0.76 16 34 H 0.10 1.33 7.63 -2.39 -0.02 1.31 16 35 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.96 8.06 -2.38 -0.02 0.94 16 38 H 0.10 1.77 7.97 -2.38 -0.02 1.75 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16 43 H 0.13 3.65 7.99 -2.91 -0.02 3.63 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 1.89 5.94 -2.39 -0.01 1.88 16 46 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.09 1.61 7.56 -2.39 -0.02 1.59 16 48 H 0.19 3.05 7.26 -2.91 -0.02 3.03 16 Total: -1.00 -76.83 389.10 1.00 -75.82 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.96 Total: 26.61 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 7.73 Total: -31.79 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -9.50 Total: -101.14 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.22 Total: -14.50 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.83 1.00 -75.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266917983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.158 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds