Wall clock time and date at job start Wed Apr 1 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46948 * 2 1 4 4 C 1.46501 * 120.00033 * 269.99989 * 3 2 1 5 5 C 1.50706 * 109.46862 * 270.00118 * 4 3 2 6 6 H 1.08000 * 119.99804 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99977 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99598 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99771 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47728 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46938 * 120.00404 * 9 7 5 12 12 H 1.48503 * 109.47091 * 240.00064 * 9 7 5 13 13 C 1.34781 * 120.00296 * 89.99824 * 3 2 1 14 14 O 1.21679 * 120.00119 * 179.97438 * 13 3 2 15 15 C 1.46777 * 119.99402 * 359.97438 * 13 3 2 16 16 C 1.41481 * 126.51750 * 269.97029 * 15 13 3 17 17 C 1.50702 * 125.90493 * 0.04069 * 16 15 13 18 18 N 1.30288 * 108.19216 * 180.02562 * 16 15 13 19 19 N 1.39902 * 109.22917 * 0.02562 * 18 16 15 20 20 C 1.46500 * 125.74290 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.46887 * 90.02932 * 20 19 18 22 22 C 1.38234 * 120.00257 * 89.99927 * 21 20 19 23 23 C 1.38238 * 119.99675 * 180.27927 * 22 21 20 24 24 C 1.38228 * 120.00120 * 359.47825 * 23 22 21 25 25 C 1.38234 * 120.00000 * 0.52176 * 24 23 22 26 26 C 1.38234 * 119.99503 * 270.01528 * 21 20 19 27 27 C 1.34847 * 108.50377 * 0.24409 * 19 18 16 28 28 N 1.38008 * 126.44500 * 179.72767 * 27 19 18 29 29 H 1.08994 * 109.46736 * 60.00500 * 1 2 3 30 30 H 1.09002 * 109.46573 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47342 * 300.00041 * 1 2 3 32 32 H 1.08996 * 109.46939 * 239.99647 * 2 1 3 33 33 H 1.09005 * 109.46963 * 119.99935 * 2 1 3 34 34 H 1.09000 * 109.47313 * 29.99546 * 4 3 2 35 35 H 1.08997 * 109.47244 * 150.00296 * 4 3 2 36 36 H 0.97007 * 119.99505 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47251 * 270.01881 * 17 16 15 38 38 H 1.08992 * 109.47268 * 30.02408 * 17 16 15 39 39 H 1.09007 * 109.47107 * 150.02191 * 17 16 15 40 40 H 1.08988 * 109.47441 * 330.02315 * 20 19 18 41 41 H 1.09000 * 109.46440 * 210.02237 * 20 19 18 42 42 H 1.08002 * 119.99744 * 359.97438 * 22 21 20 43 43 H 1.08004 * 119.99577 * 179.72816 * 23 22 21 44 44 H 1.07999 * 119.99932 * 180.24104 * 24 23 22 45 45 H 1.08001 * 120.00310 * 179.72161 * 25 24 23 46 46 H 1.07997 * 120.00460 * 0.02562 * 26 21 20 47 47 H 0.97003 * 119.99735 * 0.02562 * 28 27 19 48 48 H 0.96999 * 120.00407 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3896 -2.8780 8 7 3.3489 3.1248 -3.6185 9 14 5.9136 2.0966 -3.4167 10 1 6.6013 1.2414 -2.4162 11 1 5.9216 1.4170 -4.7371 12 1 6.6205 3.3980 -3.5256 13 6 2.2430 2.0167 1.1672 14 8 2.6490 3.1637 1.1672 15 6 1.9978 1.3249 2.4383 16 6 0.7854 1.3079 3.1674 17 6 -0.4929 2.0017 2.7728 18 7 0.9651 0.5886 4.2387 19 7 2.2801 0.1117 4.2583 20 6 2.8685 -0.7335 5.3003 21 6 2.6605 -2.1839 4.9475 22 6 3.6057 -2.8543 4.1939 23 6 3.4120 -4.1831 3.8654 24 6 2.2784 -4.8443 4.2997 25 6 1.3333 -4.1738 5.0534 26 6 1.5243 -2.8436 5.3773 27 6 2.9165 0.5659 3.1597 28 7 4.2300 0.3221 2.8135 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6750 3.5153 -4.4445 37 1 -0.5040 3.0083 3.1908 38 1 -0.5549 2.0588 1.6862 39 1 -1.3446 1.4398 3.1563 40 1 2.3891 -0.5195 6.2554 41 1 3.9362 -0.5274 5.3753 42 1 4.4930 -2.3386 3.8575 43 1 4.1484 -4.7057 3.2729 44 1 2.1291 -5.8835 4.0464 45 1 0.4454 -4.6891 5.3889 46 1 0.7855 -2.3196 5.9656 47 1 4.7891 -0.2253 3.3869 48 1 4.5942 0.6980 1.9968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285190425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:23 Heat of formation + Delta-G solvation = 67.234942 kcal Electronic energy + Delta-G solvation = -30539.006474 eV Core-core repulsion = 26595.416839 eV Total energy + Delta-G solvation = -3943.589635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21431 -39.44589 -38.31866 -35.14308 -34.97918 -34.01843 -32.71618 -31.45864 -31.18775 -29.91733 -28.98708 -28.37872 -26.85119 -25.51316 -23.20268 -22.90749 -22.79713 -21.77423 -20.75695 -19.88330 -18.45592 -17.50206 -16.86347 -16.64214 -16.26177 -15.93044 -15.77409 -15.47971 -15.18437 -14.90378 -14.46887 -14.23313 -13.71574 -13.66272 -13.52664 -13.22754 -13.04480 -12.85603 -12.71595 -12.60874 -12.46309 -12.16503 -12.02086 -11.78042 -11.54913 -11.40712 -11.30942 -11.14643 -10.83487 -10.75188 -10.56502 -10.40986 -10.37162 -10.07301 -9.56014 -9.21704 -9.19186 -8.82139 -8.58256 -8.39818 -7.51412 -7.42785 -6.00083 -4.04419 0.90898 1.12118 2.21090 2.44728 2.92962 3.30229 3.37304 3.39751 3.50343 3.56691 3.77319 4.23137 4.33970 4.36201 4.49409 4.68091 4.71372 4.83053 4.97568 5.08965 5.21768 5.26527 5.33324 5.36313 5.55429 5.62322 5.64644 5.72589 5.77349 5.83464 5.86504 5.99122 6.04580 6.12905 6.13994 6.21978 6.25709 6.31852 6.42254 6.50834 6.67864 6.68712 6.91557 7.22985 7.43001 7.53997 7.59002 7.70143 7.98347 8.08707 8.29947 8.63124 8.96155 9.31926 9.61083 11.07838 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003504 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.183367 B = 7989.077236 C = 8891.035649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 N -0.589 5.589 4 C 0.245 3.755 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.590 3.410 14 O -0.544 6.544 15 C -0.337 4.337 16 C 0.140 3.860 17 C -0.079 4.079 18 N -0.313 5.313 19 N -0.392 5.392 20 C 0.179 3.821 21 C -0.114 4.114 22 C -0.100 4.100 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.088 4.088 27 C 0.402 3.598 28 N -0.843 5.843 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.395 0.605 48 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -15.412 18.285 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.006 4.006 3 N -0.320 5.320 4 C 0.126 3.874 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.376 3.624 14 O -0.421 6.421 15 C -0.357 4.357 16 C -0.027 4.027 17 C -0.137 4.137 18 N -0.135 5.135 19 N -0.179 5.179 20 C 0.057 3.943 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.107 4.107 27 C 0.172 3.828 28 N -0.392 5.392 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.224 0.776 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.660 -15.183 19.240 24.782 hybrid contribution 1.896 -0.152 -1.253 2.278 sum -1.764 -15.336 17.988 23.703 Atomic orbital electron populations 1.22335 0.97126 1.01181 1.02525 1.21215 0.93444 0.84260 1.01719 1.48216 1.63319 1.13119 1.07364 1.19254 0.96082 0.93690 0.78394 1.21456 0.96965 1.31543 1.06069 0.92637 1.24929 0.97658 0.95072 0.96486 1.69944 1.35457 1.33600 1.14294 0.86482 0.84880 0.77942 0.78275 1.19971 1.21069 1.20949 1.17054 0.77716 0.85395 0.82272 1.90748 1.45885 1.18022 1.87449 1.19361 0.94847 1.18298 1.03166 1.21909 0.94928 0.94760 0.91152 1.20332 0.91361 0.99567 1.02489 1.76963 0.93565 1.20474 1.22483 1.48019 1.09030 1.42783 1.18070 1.20367 0.98400 0.85118 0.90393 1.20059 0.96056 0.95096 1.00361 1.21023 0.98764 0.94872 0.97260 1.21140 0.98054 0.94685 1.00006 1.21222 0.94229 1.00027 0.97523 1.21177 0.99297 0.94718 0.98901 1.21075 0.96234 0.94439 0.98938 1.17911 0.85313 0.92349 0.87233 1.41451 1.07792 1.59952 1.30021 0.92335 0.92794 0.92117 0.90813 0.92136 0.95134 0.93912 0.92853 0.90239 0.89944 0.90848 0.87720 0.89042 0.86391 0.85832 0.85983 0.85881 0.85650 0.77618 0.74287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.12 2.12 5.95 -4.04 -0.02 2.09 16 3 N -0.59 -12.87 2.46 -176.56 -0.43 -13.30 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.52 -14.65 9.39 -34.44 -0.32 -14.97 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.59 13.09 6.96 -12.81 -0.09 13.01 16 14 O -0.54 -14.53 16.69 5.21 0.09 -14.44 16 15 C -0.34 -6.16 4.13 -104.82 -0.43 -6.60 16 16 C 0.14 2.32 6.76 -82.01 -0.55 1.76 16 17 C -0.08 -1.11 9.44 36.01 0.34 -0.77 16 18 N -0.31 -4.85 12.47 33.91 0.42 -4.43 16 19 N -0.39 -5.32 3.58 -61.22 -0.22 -5.54 16 20 C 0.18 1.71 6.35 -5.19 -0.03 1.67 16 21 C -0.11 -1.10 5.46 -104.62 -0.57 -1.67 16 22 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 23 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 24 C -0.11 -0.93 10.05 -39.59 -0.40 -1.33 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.09 -0.83 9.70 -39.58 -0.38 -1.22 16 27 C 0.40 6.18 7.70 -153.78 -1.18 4.99 16 28 N -0.84 -10.70 9.04 31.40 0.28 -10.42 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.92 4.56 -51.93 -0.24 0.68 16 32 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 1.04 6.64 -51.93 -0.34 0.70 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.22 6.19 -51.93 -0.32 0.90 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.88 8.08 -51.94 -0.42 0.46 16 41 H 0.09 0.67 7.39 -51.93 -0.38 0.28 16 42 H 0.12 0.89 7.25 -52.49 -0.38 0.51 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.40 3.55 7.23 -40.82 -0.29 3.26 16 48 H 0.42 6.12 8.70 -40.82 -0.36 5.77 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -35.42 401.43 -9.56 -44.98 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.89 Total: 7.74 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.58 Total: -1.45 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.79 Total: -59.52 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.42 -9.56 -44.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285190425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.217 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds