Wall clock time and date at job start Wed Apr 1 2020 01:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46948 * 2 1 4 4 C 1.46501 * 120.00033 * 269.99989 * 3 2 1 5 5 C 1.50706 * 109.46862 * 270.00118 * 4 3 2 6 6 H 1.08000 * 119.99804 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99977 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99598 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99771 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47728 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46938 * 120.00404 * 9 7 5 12 12 H 1.48503 * 109.47091 * 240.00064 * 9 7 5 13 13 C 1.34781 * 120.00296 * 89.99824 * 3 2 1 14 14 O 1.21679 * 120.00119 * 179.97438 * 13 3 2 15 15 C 1.46777 * 119.99402 * 359.97438 * 13 3 2 16 16 C 1.41481 * 126.51750 * 269.97029 * 15 13 3 17 17 C 1.50702 * 125.90493 * 0.04069 * 16 15 13 18 18 N 1.30288 * 108.19216 * 180.02562 * 16 15 13 19 19 N 1.39902 * 109.22917 * 0.02562 * 18 16 15 20 20 C 1.46500 * 125.74290 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.46887 * 90.02932 * 20 19 18 22 22 C 1.38234 * 120.00257 * 89.99927 * 21 20 19 23 23 C 1.38238 * 119.99675 * 180.27927 * 22 21 20 24 24 C 1.38228 * 120.00120 * 359.47825 * 23 22 21 25 25 C 1.38234 * 120.00000 * 0.52176 * 24 23 22 26 26 C 1.38234 * 119.99503 * 270.01528 * 21 20 19 27 27 C 1.34847 * 108.50377 * 0.24409 * 19 18 16 28 28 N 1.38008 * 126.44500 * 179.72767 * 27 19 18 29 29 H 1.08994 * 109.46736 * 60.00500 * 1 2 3 30 30 H 1.09002 * 109.46573 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47342 * 300.00041 * 1 2 3 32 32 H 1.08996 * 109.46939 * 239.99647 * 2 1 3 33 33 H 1.09005 * 109.46963 * 119.99935 * 2 1 3 34 34 H 1.09000 * 109.47313 * 29.99546 * 4 3 2 35 35 H 1.08997 * 109.47244 * 150.00296 * 4 3 2 36 36 H 0.97007 * 119.99505 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47251 * 270.01881 * 17 16 15 38 38 H 1.08992 * 109.47268 * 30.02408 * 17 16 15 39 39 H 1.09007 * 109.47107 * 150.02191 * 17 16 15 40 40 H 1.08988 * 109.47441 * 330.02315 * 20 19 18 41 41 H 1.09000 * 109.46440 * 210.02237 * 20 19 18 42 42 H 1.08002 * 119.99744 * 359.97438 * 22 21 20 43 43 H 1.08004 * 119.99577 * 179.72816 * 23 22 21 44 44 H 1.07999 * 119.99932 * 180.24104 * 24 23 22 45 45 H 1.08001 * 120.00310 * 179.72161 * 25 24 23 46 46 H 1.07997 * 120.00460 * 0.02562 * 26 21 20 47 47 H 0.97003 * 119.99735 * 0.02562 * 28 27 19 48 48 H 0.96999 * 120.00407 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3896 -2.8780 8 7 3.3489 3.1248 -3.6185 9 14 5.9136 2.0966 -3.4167 10 1 6.6013 1.2414 -2.4162 11 1 5.9216 1.4170 -4.7371 12 1 6.6205 3.3980 -3.5256 13 6 2.2430 2.0167 1.1672 14 8 2.6490 3.1637 1.1672 15 6 1.9978 1.3249 2.4383 16 6 0.7854 1.3079 3.1674 17 6 -0.4929 2.0017 2.7728 18 7 0.9651 0.5886 4.2387 19 7 2.2801 0.1117 4.2583 20 6 2.8685 -0.7335 5.3003 21 6 2.6605 -2.1839 4.9475 22 6 3.6057 -2.8543 4.1939 23 6 3.4120 -4.1831 3.8654 24 6 2.2784 -4.8443 4.2997 25 6 1.3333 -4.1738 5.0534 26 6 1.5243 -2.8436 5.3773 27 6 2.9165 0.5659 3.1597 28 7 4.2300 0.3221 2.8135 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6750 3.5153 -4.4445 37 1 -0.5040 3.0083 3.1908 38 1 -0.5549 2.0588 1.6862 39 1 -1.3446 1.4398 3.1563 40 1 2.3891 -0.5195 6.2554 41 1 3.9362 -0.5274 5.3753 42 1 4.4930 -2.3386 3.8575 43 1 4.1484 -4.7057 3.2729 44 1 2.1291 -5.8835 4.0464 45 1 0.4454 -4.6891 5.3889 46 1 0.7855 -2.3196 5.9656 47 1 4.7891 -0.2253 3.3869 48 1 4.5942 0.6980 1.9968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285190425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:22 Heat of formation + Delta-G solvation = 45.722423 kcal Electronic energy + Delta-G solvation = -30539.939327 eV Core-core repulsion = 26595.416839 eV Total energy + Delta-G solvation = -3944.522488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.40459 -40.31138 -39.85041 -36.80172 -36.21392 -35.08211 -34.70442 -32.43913 -31.81583 -31.52033 -30.35454 -29.42489 -28.62780 -26.59672 -25.02162 -24.30910 -23.55593 -22.71500 -21.97585 -21.02519 -19.94429 -18.64986 -18.43944 -17.91008 -17.67973 -17.36686 -16.91841 -16.57726 -16.29248 -16.05515 -15.95847 -15.55562 -15.15424 -14.73452 -14.53855 -14.32272 -14.27158 -14.20586 -13.89457 -13.68600 -13.56442 -13.48671 -13.33233 -13.20704 -13.13333 -12.97644 -12.64006 -12.45680 -12.22404 -12.08869 -11.92313 -11.85804 -11.78677 -11.65913 -11.62326 -10.62830 -10.60329 -9.87484 -9.84150 -9.68157 -9.36905 -8.69641 -8.17337 -6.31868 0.21692 0.48122 1.04210 1.38767 1.41124 1.43284 1.52365 1.62356 1.85761 2.38485 2.62466 2.67156 2.93505 3.12294 3.47838 3.66543 3.84747 4.05408 4.09701 4.12993 4.23875 4.25367 4.27746 4.40629 4.45711 4.57691 4.60458 4.63531 4.69600 4.74337 4.87348 4.94902 4.98190 5.01872 5.05381 5.11847 5.13795 5.27985 5.39662 5.43602 5.52357 5.58564 5.60151 5.64048 5.74866 5.94286 6.06258 6.12037 6.25184 6.57036 6.76015 6.89311 6.93149 7.33568 7.60458 8.90076 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003504 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.183367 B = 7989.077236 C = 8891.035649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.588 5.588 4 C 0.261 3.739 5 C -0.536 4.536 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.273 1.273 12 H -0.284 1.284 13 C 0.595 3.405 14 O -0.601 6.601 15 C -0.373 4.373 16 C 0.134 3.866 17 C -0.079 4.079 18 N -0.314 5.314 19 N -0.380 5.380 20 C 0.171 3.829 21 C -0.125 4.125 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.131 4.131 26 C -0.101 4.101 27 C 0.411 3.589 28 N -0.830 5.830 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.020 0.980 35 H -0.003 1.003 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.128 0.872 47 H 0.414 0.586 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -18.091 19.654 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.004 4.004 3 N -0.318 5.318 4 C 0.140 3.860 5 C -0.575 4.575 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.198 1.198 12 H -0.210 1.210 13 C 0.384 3.616 14 O -0.483 6.483 15 C -0.393 4.393 16 C -0.034 4.034 17 C -0.137 4.137 18 N -0.136 5.136 19 N -0.168 5.168 20 C 0.051 3.949 21 C -0.126 4.126 22 C -0.129 4.129 23 C -0.150 4.150 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.120 4.120 27 C 0.178 3.822 28 N -0.380 5.380 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.038 0.962 35 H 0.015 0.985 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.246 0.754 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.762 -17.942 20.659 27.502 hybrid contribution 1.603 0.606 -1.616 2.355 sum -1.159 -17.337 19.043 25.778 Atomic orbital electron populations 1.22266 0.95006 1.02991 1.02160 1.21377 0.95146 0.81860 1.01994 1.48182 1.63174 1.14443 1.05966 1.18742 0.95566 0.91460 0.80210 1.21721 0.97621 1.31744 1.06409 0.92435 1.25867 1.02348 0.94551 0.96467 1.70075 1.37696 1.34408 1.14787 0.85357 0.79070 0.77912 0.78381 1.18577 1.19817 1.21005 1.17548 0.76043 0.84661 0.83376 1.90703 1.48544 1.20680 1.88346 1.19045 0.97004 1.20857 1.02397 1.22138 0.95065 0.95081 0.91104 1.20375 0.91574 1.00044 1.01698 1.76914 0.94688 1.20146 1.21818 1.48270 1.08218 1.42324 1.17969 1.20770 0.99793 0.84681 0.89624 1.20063 0.96505 0.94920 1.01103 1.21250 0.99168 0.95294 0.97140 1.21427 0.98605 0.94787 1.00152 1.21534 0.93943 1.01037 0.96977 1.21445 1.00045 0.94608 0.98797 1.21252 0.96407 0.95040 0.99271 1.17847 0.85693 0.91378 0.87234 1.41419 1.07055 1.59583 1.29894 0.93525 0.89805 0.91711 0.91296 0.90849 0.96187 0.98510 0.92549 0.89971 0.91287 0.88294 0.86465 0.86550 0.85175 0.84403 0.84109 0.84262 0.85421 0.75361 0.75104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 10.24 71.99 0.74 -4.27 16 2 C 0.12 4.24 5.95 86.38 0.51 4.76 16 3 N -0.59 -26.48 2.46 -830.73 -2.04 -28.52 16 4 C 0.26 14.47 5.16 85.63 0.44 14.91 16 5 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 9 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.60 27.28 6.96 86.47 0.60 27.88 16 14 O -0.60 -33.78 16.69 -4.28 -0.07 -33.85 16 15 C -0.37 -13.60 4.13 -19.99 -0.08 -13.68 16 16 C 0.13 4.34 6.76 43.59 0.29 4.63 16 17 C -0.08 -2.17 9.44 71.24 0.67 -1.50 16 18 N -0.31 -9.20 12.47 -46.63 -0.58 -9.78 16 19 N -0.38 -9.55 3.58 -347.60 -1.24 -10.80 16 20 C 0.17 2.81 6.35 85.63 0.54 3.35 16 21 C -0.12 -2.09 5.46 -19.87 -0.11 -2.20 16 22 C -0.11 -1.71 9.70 22.27 0.22 -1.50 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 26 C -0.10 -1.69 9.70 22.27 0.22 -1.48 16 27 C 0.41 12.08 7.70 132.69 1.02 13.11 16 28 N -0.83 -19.70 9.04 -54.57 -0.49 -20.19 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.91 4.56 -2.39 -0.01 1.90 16 32 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 33 H 0.07 2.44 6.64 -2.38 -0.02 2.43 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 36 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.07 6.19 -2.39 -0.01 2.06 16 39 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.12 1.67 8.08 -2.39 -0.02 1.65 16 41 H 0.12 1.32 7.39 -2.39 -0.02 1.30 16 42 H 0.13 1.59 7.25 -2.91 -0.02 1.57 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 46 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 47 H 0.41 6.36 7.23 -92.71 -0.67 5.69 16 48 H 0.42 11.68 8.70 -92.71 -0.81 10.87 16 Total: -1.00 -79.16 401.43 3.85 -75.31 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.48 Total: 28.26 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.44 Total: 9.39 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -4.07 Total: -125.63 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.07 Total: -33.85 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -79.16 3.85 -75.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285190425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.033 kcal (2) G-P(sol) polarization free energy of solvation -79.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds