Wall clock time and date at job start Wed Apr 1 2020 02:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46724 * 2 1 4 4 C 1.42908 * 114.00061 * 180.02562 * 3 2 1 5 5 C 1.53506 * 114.17289 * 209.99766 * 4 3 2 6 6 N 1.47478 * 87.93107 * 220.13696 * 5 4 3 7 7 C 1.46912 * 110.99789 * 138.70242 * 6 5 4 8 8 C 1.50697 * 109.46718 * 174.35399 * 7 6 5 9 9 C 1.35071 * 126.07308 * 105.46570 * 8 7 6 10 10 N 1.35055 * 107.98407 * 179.97438 * 9 8 7 11 11 C 1.46496 * 125.92915 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47386 * 125.00472 * 11 10 9 13 13 H 1.08004 * 119.99558 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00380 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47151 * 90.00105 * 16 14 12 18 18 H 1.48504 * 109.46913 * 209.99881 * 16 14 12 19 19 H 1.48502 * 109.46947 * 329.99684 * 16 14 12 20 20 N 1.40071 * 108.14524 * 359.75577 * 10 9 8 21 21 C 1.31654 * 108.09721 * 0.41689 * 20 10 9 22 22 C 1.48369 * 126.03783 * 179.85373 * 21 20 10 23 23 C 1.39775 * 120.90618 * 317.02898 * 22 21 20 24 24 C 1.37963 * 119.01940 * 179.97438 * 23 22 21 25 25 N 1.31930 * 120.88270 * 0.02562 * 24 23 22 26 26 C 1.31938 * 122.00808 * 359.97438 * 25 24 23 27 27 C 1.37965 * 120.87722 * 359.97438 * 26 25 24 28 28 C 1.47476 * 87.83807 * 27.01308 * 6 5 4 29 29 H 1.09005 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47161 * 299.99592 * 1 2 3 31 31 H 1.08998 * 109.47289 * 60.00682 * 1 2 3 32 32 H 1.08997 * 109.47104 * 239.99665 * 2 1 3 33 33 H 1.08998 * 109.47289 * 119.99318 * 2 1 3 34 34 H 1.09003 * 113.25131 * 342.94686 * 4 3 2 35 35 H 1.08994 * 113.47977 * 105.36768 * 5 4 3 36 36 H 1.09003 * 113.52985 * 334.90813 * 5 4 3 37 37 H 1.08998 * 109.46694 * 54.35620 * 7 6 5 38 38 H 1.08997 * 109.47090 * 294.35007 * 7 6 5 39 39 H 1.07991 * 126.00809 * 0.02562 * 9 8 7 40 40 H 1.09007 * 109.47512 * 245.00634 * 11 10 9 41 41 H 1.09002 * 109.47356 * 5.00156 * 11 10 9 42 42 H 0.96995 * 119.99834 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.48551 * 0.25061 * 23 22 21 44 44 H 1.08004 * 119.55301 * 180.02562 * 24 23 22 45 45 H 1.07998 * 119.56207 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.48748 * 179.97438 * 27 26 25 47 47 H 1.08997 * 113.48464 * 87.75757 * 28 6 5 48 48 H 1.09009 * 113.47539 * 218.22723 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.9619 2.7189 0.6996 6 7 4.9618 2.8318 -0.3786 7 6 5.1261 4.2296 -0.7999 8 6 6.2493 4.3239 -1.8002 9 6 6.1151 4.5054 -3.1319 10 7 7.3512 4.5357 -3.6753 11 6 7.6616 4.7144 -5.0957 12 6 8.6034 5.8792 -5.2615 13 1 8.9369 6.4314 -4.3953 14 6 9.0383 6.2406 -6.5189 15 7 8.6318 5.5685 -7.5737 16 14 10.2062 7.6840 -6.7243 17 1 11.6083 7.2008 -6.6495 18 1 9.9733 8.3254 -8.0433 19 1 9.9652 8.6733 -5.6433 20 7 8.2851 4.3729 -2.6441 21 6 7.6256 4.2390 -1.5125 22 6 8.2262 4.0404 -0.1704 23 6 9.2955 3.1594 0.0143 24 6 9.8245 3.0049 1.2791 25 7 9.3342 3.6745 2.3047 26 6 8.3261 4.5154 2.1732 27 6 7.7388 4.7301 0.9434 28 6 4.0125 2.1232 -1.2571 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9356 0.5398 0.2928 35 1 4.3989 2.5199 1.6780 36 1 3.2471 3.5417 0.7167 37 1 5.3601 4.8456 0.0683 38 1 4.2017 4.5823 -1.2573 39 1 5.1833 4.6089 -3.6679 40 1 8.1314 3.8097 -5.4817 41 1 6.7417 4.9096 -5.6470 42 1 8.9381 5.8225 -8.4583 43 1 9.7044 2.6111 -0.8215 44 1 10.6511 2.3267 1.4316 45 1 7.9557 5.0427 3.0399 46 1 6.9137 5.4195 0.8431 47 1 3.3106 2.7864 -1.7627 48 1 4.4926 1.4191 -1.9369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297296927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:48 Heat of formation + Delta-G solvation = 104.106398 kcal Electronic energy + Delta-G solvation = -29096.403262 eV Core-core repulsion = 25154.412494 eV Total energy + Delta-G solvation = -3941.990769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 5.16 seconds Orbital eigenvalues (eV) -40.91564 -40.10015 -39.52096 -37.28065 -34.22729 -32.90638 -32.18495 -31.18484 -30.99095 -30.49679 -28.32490 -26.76478 -26.01995 -24.23446 -23.89843 -23.18020 -23.00823 -22.01523 -20.27697 -19.97986 -19.44152 -17.43619 -16.74067 -16.59001 -16.16407 -15.89991 -15.87483 -15.67828 -15.37568 -14.73382 -14.54877 -14.29788 -14.23348 -13.63009 -13.60538 -13.50957 -13.27625 -13.04614 -12.80665 -12.66203 -12.58254 -12.30191 -12.18934 -11.84787 -11.64342 -11.54673 -11.25166 -11.19009 -10.98811 -10.88097 -10.82901 -10.32844 -10.07846 -9.95478 -9.63447 -9.45911 -9.33809 -8.97827 -8.95052 -8.71216 -8.44533 -7.72344 -6.31972 -4.37475 1.28222 1.34893 2.61109 3.10807 3.19928 3.25972 3.29187 3.39492 3.40945 4.07566 4.13929 4.25579 4.27794 4.59358 4.70865 4.74990 4.77558 4.91626 4.97610 5.00318 5.04069 5.07159 5.09165 5.20504 5.28372 5.35302 5.40826 5.43890 5.50291 5.55790 5.59185 5.65660 5.69012 5.73850 5.82549 5.86791 5.92351 6.09033 6.14748 6.16978 6.49253 6.55541 6.82528 6.86293 6.93686 6.98303 7.01147 7.18593 7.60948 7.77278 7.86528 8.12374 8.42029 8.70776 9.28922 10.77009 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.003054 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.059098 B = 9164.976594 C =11785.205033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.376 6.376 4 C 0.058 3.942 5 C -0.003 4.003 6 N -0.455 5.455 7 C 0.107 3.893 8 C -0.234 4.234 9 C 0.056 3.944 10 N -0.317 5.317 11 C 0.256 3.744 12 C -0.531 4.531 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.908 3.092 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.272 1.272 20 N -0.258 5.258 21 C 0.082 3.918 22 C 0.071 3.929 23 C -0.150 4.150 24 C 0.096 3.904 25 N -0.494 5.494 26 C 0.094 3.906 27 C -0.154 4.154 28 C -0.013 4.013 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.164 0.836 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.268 0.732 43 H 0.135 0.865 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.132 0.868 47 H 0.077 0.923 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -8.635 16.395 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.294 6.294 4 C -0.001 4.001 5 C -0.132 4.132 6 N -0.179 5.179 7 C -0.022 4.022 8 C -0.247 4.247 9 C -0.094 4.094 10 N -0.097 5.097 11 C 0.139 3.861 12 C -0.569 4.569 13 H 0.087 0.913 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.735 3.265 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.197 1.197 20 N -0.083 5.083 21 C -0.081 4.081 22 C 0.061 3.939 23 C -0.171 4.171 24 C -0.061 4.061 25 N -0.204 5.204 26 C -0.062 4.062 27 C -0.175 4.175 28 C -0.143 4.143 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.182 0.818 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.153 0.847 44 H 0.170 0.830 45 H 0.169 0.831 46 H 0.150 0.850 47 H 0.095 0.905 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.389 -8.754 16.312 21.229 hybrid contribution -1.216 1.050 -1.218 2.016 sum -11.605 -7.704 15.094 20.540 Atomic orbital electron populations 1.21752 0.93832 1.02214 1.03112 1.22516 0.95517 0.83891 1.00146 1.87938 1.20508 1.26478 1.94474 1.23789 0.80801 0.98440 0.97066 1.24116 0.93944 0.97196 0.97923 1.68986 1.30920 1.13264 1.04700 1.20830 0.95188 0.89461 0.96689 1.19420 0.93207 1.18832 0.93204 1.22215 0.90984 1.02613 0.93610 1.49406 1.02288 1.49135 1.08908 1.19795 0.98542 0.98928 0.68854 1.21220 1.28235 1.13850 0.93598 0.91270 1.24938 0.96387 0.97319 0.95314 1.69912 1.44292 1.40238 0.98795 0.86317 0.80900 0.81731 0.77534 1.20219 1.20914 1.19674 1.77680 1.15693 1.21140 0.93746 1.20229 0.91656 1.04378 0.91846 1.18077 0.92645 0.93261 0.89952 1.22227 0.96652 0.99300 0.98956 1.22577 0.98379 0.96995 0.88107 1.67580 1.11448 1.07190 1.34187 1.22526 0.92287 0.95037 0.96360 1.22081 1.01588 1.00916 0.92934 1.24403 0.94203 0.98858 0.96800 0.91168 0.91912 0.91823 0.93241 0.93334 0.88424 0.89407 0.90597 0.90349 0.93319 0.81846 0.93520 0.92636 0.92232 0.84712 0.82969 0.83070 0.84997 0.90521 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.38 -3.89 10.40 -35.23 -0.37 -4.26 16 4 C 0.06 0.58 4.65 -26.20 -0.12 0.46 16 5 C 0.00 -0.03 7.55 -7.55 -0.06 -0.09 16 6 N -0.46 -5.66 6.32 -246.12 -1.56 -7.21 16 7 C 0.11 1.39 4.75 -4.97 -0.02 1.37 16 8 C -0.23 -3.92 5.64 -104.76 -0.59 -4.51 16 9 C 0.06 1.01 11.32 -17.26 -0.20 0.82 16 10 N -0.32 -7.01 3.67 -62.58 -0.23 -7.24 16 11 C 0.26 6.31 6.26 -5.19 -0.03 6.27 16 12 C -0.53 -14.49 9.23 -34.44 -0.32 -14.80 16 13 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 16 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 N -0.26 -5.77 12.44 33.42 0.42 -5.35 16 21 C 0.08 1.54 6.72 -82.78 -0.56 0.99 16 22 C 0.07 1.15 5.77 -104.58 -0.60 0.55 16 23 C -0.15 -2.30 9.89 -39.11 -0.39 -2.68 16 24 C 0.10 1.30 11.17 -17.61 -0.20 1.10 16 25 N -0.49 -6.98 10.35 -13.34 -0.14 -7.12 16 26 C 0.09 1.20 11.17 -17.61 -0.20 1.00 16 27 C -0.15 -2.11 9.02 -39.11 -0.35 -2.46 16 28 C -0.01 -0.15 7.52 -7.55 -0.06 -0.21 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.08 0.94 5.80 -51.93 -0.30 0.64 16 38 H 0.05 0.58 7.37 -51.93 -0.38 0.20 16 39 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 44 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 45 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 46 H 0.13 1.60 6.28 -52.49 -0.33 1.27 16 47 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 48 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -31.06 404.46 -10.48 -41.55 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.26 Total: 2.06 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.16 Total: -10.51 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.77 Total: -51.12 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.37 Total: -4.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.06 -10.48 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297296927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.655 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.16 seconds