Wall clock time and date at job start Wed Apr 1 2020 04:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34954 * 126.03572 * 2 1 4 4 C 1.35310 * 107.74431 * 179.74714 * 3 2 1 5 5 C 1.39864 * 107.92125 * 0.39262 * 4 3 2 6 6 C 1.50699 * 125.90011 * 179.85847 * 5 4 3 7 7 C 1.53004 * 109.46843 * 124.71605 * 6 5 4 8 8 N 1.46504 * 109.46928 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99854 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00097 * 180.27545 * 9 8 7 12 12 C 1.46500 * 120.00431 * 179.72742 * 11 9 8 13 13 H 1.09002 * 109.46905 * 34.99910 * 12 11 9 14 14 C 1.52995 * 109.47327 * 155.00306 * 12 11 9 15 15 C 1.50697 * 109.46910 * 294.99702 * 14 12 11 16 16 H 1.07997 * 120.00093 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00039 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99705 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47111 * 60.00354 * 19 17 15 21 21 H 1.48502 * 109.47597 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47637 * 300.00573 * 19 17 15 23 23 C 1.50701 * 109.47074 * 275.00559 * 12 11 9 24 24 C 1.38242 * 120.00000 * 319.71990 * 23 12 11 25 25 C 1.38235 * 120.00185 * 179.78840 * 24 23 12 26 26 C 1.38238 * 119.99649 * 0.44590 * 25 24 23 27 27 C 1.38234 * 120.00400 * 359.80779 * 26 25 24 28 28 C 1.38231 * 120.00164 * 139.99708 * 23 12 11 29 29 N 1.30838 * 108.20461 * 359.60223 * 5 4 3 30 30 H 1.08996 * 109.47178 * 269.97456 * 1 2 3 31 31 H 1.09004 * 109.47089 * 29.98021 * 1 2 3 32 32 H 1.08996 * 109.46596 * 149.97835 * 1 2 3 33 33 H 1.08008 * 126.12248 * 359.97438 * 3 2 1 34 34 H 1.08002 * 126.03965 * 180.27036 * 4 3 2 35 35 H 1.09007 * 109.47199 * 4.72342 * 6 5 4 36 36 H 1.08997 * 109.47846 * 244.71716 * 6 5 4 37 37 H 1.08998 * 109.47202 * 60.00416 * 7 6 5 38 38 H 1.08997 * 109.47419 * 300.00314 * 7 6 5 39 39 H 0.97000 * 120.00410 * 0.02562 * 8 7 6 40 40 H 0.97000 * 120.00112 * 359.73180 * 11 9 8 41 41 H 1.08994 * 109.47294 * 55.00438 * 14 12 11 42 42 H 1.09007 * 109.46880 * 175.00499 * 14 12 11 43 43 H 0.97001 * 119.99846 * 180.02562 * 18 17 15 44 44 H 1.08001 * 119.99630 * 0.02562 * 24 23 12 45 45 H 1.07995 * 120.00226 * 180.27406 * 25 24 23 46 46 H 1.07998 * 119.99720 * 179.83211 * 26 25 24 47 47 H 1.07995 * 120.00515 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00539 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0057 5 6 3.5347 -0.7320 0.0002 6 6 4.7497 -1.6235 0.0006 7 6 4.6710 -2.5922 1.1823 8 7 5.8525 -3.4584 1.1831 9 6 5.9997 -4.3964 2.1398 10 8 5.1517 -4.5238 3.0018 11 7 7.0892 -5.1896 2.1438 12 6 7.2522 -6.2051 3.1870 13 1 6.2770 -6.6134 3.4521 14 6 8.1519 -7.3289 2.6688 15 6 7.4661 -8.0357 1.5281 16 1 6.4868 -7.7152 1.2049 17 6 8.0894 -9.0910 0.8965 18 7 9.2822 -9.4810 1.2898 19 14 7.2397 -9.9667 -0.5178 20 1 6.9760 -8.9985 -1.6126 21 1 8.1133 -11.0567 -1.0217 22 1 5.9545 -10.5405 -0.0444 23 6 7.8820 -5.5783 4.4042 24 6 8.9009 -4.6555 4.2576 25 6 9.4756 -4.0772 5.3739 26 6 9.0378 -4.4286 6.6372 27 6 8.0226 -5.3553 6.7840 28 6 7.4449 -5.9303 5.6674 29 7 2.2892 -1.1327 0.0001 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8898 -0.5142 33 1 1.9281 2.1194 -0.0004 34 1 4.4211 1.2964 0.0113 35 1 5.6483 -1.0130 0.0906 36 1 4.7861 -2.1887 -0.9307 37 1 3.7725 -3.2026 1.0925 38 1 4.6346 -2.0270 2.1136 39 1 6.5291 -3.3565 0.4957 40 1 7.7656 -5.0881 1.4559 41 1 9.0952 -6.9080 2.3210 42 1 8.3454 -8.0393 3.4726 43 1 9.7209 -10.2231 0.8452 44 1 9.2452 -4.3835 3.2707 45 1 10.2685 -3.3530 5.2592 46 1 9.4887 -3.9789 7.5094 47 1 7.6809 -5.6301 7.7709 48 1 6.6517 -6.6542 5.7822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354854303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:32 Heat of formation + Delta-G solvation = 65.174341 kcal Electronic energy + Delta-G solvation = -28536.283472 eV Core-core repulsion = 24592.604482 eV Total energy + Delta-G solvation = -3943.678989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.39431 -39.68331 -38.52727 -35.85939 -34.85967 -33.57923 -32.66354 -31.35534 -30.51497 -30.33433 -29.74543 -28.63040 -26.45753 -24.82985 -23.22977 -22.21136 -21.87425 -21.39313 -20.67129 -19.92856 -19.59899 -17.83264 -17.12432 -16.78742 -16.11252 -15.91190 -15.65033 -15.33619 -14.75493 -14.64125 -14.53632 -14.29241 -14.07672 -13.85721 -13.64117 -13.33771 -13.02571 -12.95332 -12.87864 -12.63764 -12.47966 -12.41539 -12.04642 -11.88435 -11.54889 -11.45028 -11.07519 -10.85390 -10.71381 -10.66394 -10.57462 -10.37745 -9.71118 -9.60107 -9.45444 -9.24571 -8.80122 -8.79086 -8.46295 -8.40336 -8.19849 -8.09096 -6.04280 -4.07097 1.65158 1.86061 1.88344 2.26400 2.54408 3.25344 3.32426 3.37047 3.40787 3.82496 4.20816 4.28803 4.44205 4.49476 4.67864 4.81382 4.89235 4.93280 5.07356 5.08775 5.32292 5.32536 5.33734 5.35173 5.45155 5.50841 5.55650 5.63013 5.74431 5.99009 6.01698 6.02129 6.08391 6.24872 6.41468 6.44131 6.50969 6.66727 6.75192 6.82505 6.92012 6.93132 7.05703 7.19732 7.41900 7.48805 7.50891 7.58052 7.75555 7.93194 8.31929 8.63179 8.98880 9.21638 9.57513 11.06260 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008090 B = 0.002776 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.157535 B =10083.548570 C =12705.765827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.378 5.378 3 C 0.051 3.949 4 C -0.267 4.267 5 C 0.080 3.920 6 C -0.049 4.049 7 C 0.150 3.850 8 N -0.754 5.754 9 C 0.704 3.296 10 O -0.598 6.598 11 N -0.717 5.717 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.518 4.518 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.070 4.070 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.108 4.108 29 N -0.286 5.286 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.394 0.606 40 H 0.396 0.604 41 H 0.024 0.976 42 H 0.034 0.966 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 22.041 -0.861 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.095 4.095 4 C -0.297 4.297 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.024 3.976 8 N -0.410 5.410 9 C 0.404 3.596 10 O -0.476 6.476 11 N -0.369 5.369 12 C 0.097 3.903 13 H 0.104 0.896 14 C -0.013 4.013 15 C -0.556 4.556 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.071 4.071 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 N -0.109 5.109 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.190 0.810 34 H 0.166 0.834 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.230 0.770 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.372 20.775 -0.096 23.220 hybrid contribution 0.678 0.395 -1.445 1.644 sum -9.694 21.171 -1.540 23.335 Atomic orbital electron populations 1.21857 0.74245 1.04427 1.03470 1.48544 1.06672 1.03838 1.57001 1.22529 0.91228 0.93449 1.02322 1.21419 0.97097 0.94305 1.16831 1.22056 0.93062 0.93829 0.99754 1.20199 0.92980 0.95933 0.99783 1.20967 0.88204 0.91161 0.97237 1.45046 1.25686 1.38318 1.31991 1.15969 0.82737 0.79210 0.81724 1.90878 1.43782 1.73219 1.39737 1.45116 1.22607 1.37190 1.32004 1.20099 1.00391 0.87043 0.82753 0.89620 1.19390 0.94048 0.91221 0.96668 1.21115 1.03378 1.15170 1.15953 0.92396 1.24985 0.94876 0.96995 0.97327 1.69953 1.13945 1.27765 1.41557 0.86653 0.79468 0.79277 0.82569 1.20303 1.21386 1.20236 1.20624 0.95240 0.95559 0.95714 1.20892 0.96203 0.97026 0.98321 1.21030 1.00164 1.00403 0.92847 1.20976 0.98336 0.99189 0.96947 1.21034 0.97207 0.97708 0.98235 1.21023 0.99780 0.99817 0.92020 1.77407 1.01329 1.07631 1.24523 0.90684 0.89562 0.89223 0.80989 0.83415 0.89238 0.89402 0.91257 0.91948 0.77274 0.76993 0.95765 0.94739 0.92878 0.86617 0.86839 0.86943 0.86688 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.47 59.85 0.69 1.25 16 2 N -0.38 -3.72 4.01 -68.16 -0.27 -4.00 16 3 C 0.05 0.41 11.49 -17.22 -0.20 0.21 16 4 C -0.27 -2.52 10.72 -40.02 -0.43 -2.94 16 5 C 0.08 0.92 6.49 -82.41 -0.53 0.39 16 6 C -0.05 -0.50 5.91 -27.88 -0.16 -0.66 16 7 C 0.15 2.03 5.63 -4.04 -0.02 2.01 16 8 N -0.75 -10.82 5.56 -65.22 -0.36 -11.18 16 9 C 0.70 13.37 8.52 -86.92 -0.74 12.63 16 10 O -0.60 -13.76 16.01 5.28 0.08 -13.68 16 11 N -0.72 -13.41 4.05 -59.81 -0.24 -13.65 16 12 C 0.20 4.27 2.11 -69.08 -0.15 4.12 16 13 H 0.09 2.00 7.44 -51.93 -0.39 1.62 16 14 C 0.02 0.59 4.49 -27.89 -0.13 0.46 16 15 C -0.52 -13.93 8.84 -34.44 -0.30 -14.23 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.07 -1.35 4.91 -104.62 -0.51 -1.87 16 24 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 25 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 26 C -0.14 -2.03 10.05 -39.58 -0.40 -2.42 16 27 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.11 -1.97 9.67 -39.58 -0.38 -2.35 16 29 N -0.29 -3.74 12.54 33.67 0.42 -3.31 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.09 0.71 8.12 -51.93 -0.42 0.28 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.39 4.41 8.49 -40.82 -0.35 4.06 16 40 H 0.40 6.68 8.62 -40.82 -0.35 6.33 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.12 1.87 7.73 -52.49 -0.41 1.47 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 48 H 0.12 2.11 8.04 -52.49 -0.42 1.68 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -36.05 411.40 -10.36 -46.41 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.37 Total: 10.73 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -4.54 Total: -8.77 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.28 Total: -57.26 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.05 -10.36 -46.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354854303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.587 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds