Wall clock time and date at job start Wed Apr 1 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34954 * 126.03572 * 2 1 4 4 C 1.35310 * 107.74431 * 179.74714 * 3 2 1 5 5 C 1.39864 * 107.92125 * 0.39262 * 4 3 2 6 6 C 1.50699 * 125.90011 * 179.85847 * 5 4 3 7 7 C 1.53004 * 109.46843 * 124.71605 * 6 5 4 8 8 N 1.46504 * 109.46928 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99854 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00097 * 180.27545 * 9 8 7 12 12 C 1.46500 * 120.00431 * 179.72742 * 11 9 8 13 13 H 1.09002 * 109.46905 * 34.99910 * 12 11 9 14 14 C 1.52995 * 109.47327 * 155.00306 * 12 11 9 15 15 C 1.50697 * 109.46910 * 294.99702 * 14 12 11 16 16 H 1.07997 * 120.00093 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00039 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99705 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47111 * 60.00354 * 19 17 15 21 21 H 1.48502 * 109.47597 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47637 * 300.00573 * 19 17 15 23 23 C 1.50701 * 109.47074 * 275.00559 * 12 11 9 24 24 C 1.38242 * 120.00000 * 319.71990 * 23 12 11 25 25 C 1.38235 * 120.00185 * 179.78840 * 24 23 12 26 26 C 1.38238 * 119.99649 * 0.44590 * 25 24 23 27 27 C 1.38234 * 120.00400 * 359.80779 * 26 25 24 28 28 C 1.38231 * 120.00164 * 139.99708 * 23 12 11 29 29 N 1.30838 * 108.20461 * 359.60223 * 5 4 3 30 30 H 1.08996 * 109.47178 * 269.97456 * 1 2 3 31 31 H 1.09004 * 109.47089 * 29.98021 * 1 2 3 32 32 H 1.08996 * 109.46596 * 149.97835 * 1 2 3 33 33 H 1.08008 * 126.12248 * 359.97438 * 3 2 1 34 34 H 1.08002 * 126.03965 * 180.27036 * 4 3 2 35 35 H 1.09007 * 109.47199 * 4.72342 * 6 5 4 36 36 H 1.08997 * 109.47846 * 244.71716 * 6 5 4 37 37 H 1.08998 * 109.47202 * 60.00416 * 7 6 5 38 38 H 1.08997 * 109.47419 * 300.00314 * 7 6 5 39 39 H 0.97000 * 120.00410 * 0.02562 * 8 7 6 40 40 H 0.97000 * 120.00112 * 359.73180 * 11 9 8 41 41 H 1.08994 * 109.47294 * 55.00438 * 14 12 11 42 42 H 1.09007 * 109.46880 * 175.00499 * 14 12 11 43 43 H 0.97001 * 119.99846 * 180.02562 * 18 17 15 44 44 H 1.08001 * 119.99630 * 0.02562 * 24 23 12 45 45 H 1.07995 * 120.00226 * 180.27406 * 25 24 23 46 46 H 1.07998 * 119.99720 * 179.83211 * 26 25 24 47 47 H 1.07995 * 120.00515 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00539 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0057 5 6 3.5347 -0.7320 0.0002 6 6 4.7497 -1.6235 0.0006 7 6 4.6710 -2.5922 1.1823 8 7 5.8525 -3.4584 1.1831 9 6 5.9997 -4.3964 2.1398 10 8 5.1517 -4.5238 3.0018 11 7 7.0892 -5.1896 2.1438 12 6 7.2522 -6.2051 3.1870 13 1 6.2770 -6.6134 3.4521 14 6 8.1519 -7.3289 2.6688 15 6 7.4661 -8.0357 1.5281 16 1 6.4868 -7.7152 1.2049 17 6 8.0894 -9.0910 0.8965 18 7 9.2822 -9.4810 1.2898 19 14 7.2397 -9.9667 -0.5178 20 1 6.9760 -8.9985 -1.6126 21 1 8.1133 -11.0567 -1.0217 22 1 5.9545 -10.5405 -0.0444 23 6 7.8820 -5.5783 4.4042 24 6 8.9009 -4.6555 4.2576 25 6 9.4756 -4.0772 5.3739 26 6 9.0378 -4.4286 6.6372 27 6 8.0226 -5.3553 6.7840 28 6 7.4449 -5.9303 5.6674 29 7 2.2892 -1.1327 0.0001 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8898 -0.5142 33 1 1.9281 2.1194 -0.0004 34 1 4.4211 1.2964 0.0113 35 1 5.6483 -1.0130 0.0906 36 1 4.7861 -2.1887 -0.9307 37 1 3.7725 -3.2026 1.0925 38 1 4.6346 -2.0270 2.1136 39 1 6.5291 -3.3565 0.4957 40 1 7.7656 -5.0881 1.4559 41 1 9.0952 -6.9080 2.3210 42 1 8.3454 -8.0393 3.4726 43 1 9.7209 -10.2231 0.8452 44 1 9.2452 -4.3835 3.2707 45 1 10.2685 -3.3530 5.2592 46 1 9.4887 -3.9789 7.5094 47 1 7.6809 -5.6301 7.7709 48 1 6.6517 -6.6542 5.7822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354854303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:31 Heat of formation + Delta-G solvation = 41.738274 kcal Electronic energy + Delta-G solvation = -28537.299736 eV Core-core repulsion = 24592.604482 eV Total energy + Delta-G solvation = -3944.695254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09146 -41.19511 -39.88044 -37.17529 -36.33537 -34.74274 -34.47971 -32.65343 -31.70069 -31.29864 -30.71286 -30.36238 -27.30988 -26.51381 -24.30142 -23.76027 -23.32068 -22.25024 -21.92033 -21.28914 -20.63455 -19.23193 -18.59255 -17.81977 -17.70704 -17.22150 -16.73376 -16.50190 -16.31399 -16.04823 -15.87387 -15.27399 -15.24238 -15.00547 -14.78085 -14.50384 -14.32905 -14.16163 -14.08988 -13.68046 -13.63818 -13.55062 -13.38941 -13.08552 -12.90577 -12.79536 -12.63541 -12.47946 -12.41811 -12.12709 -11.85123 -11.56605 -11.48705 -11.32687 -11.25725 -10.57165 -10.29066 -10.21020 -9.74766 -9.67495 -9.48438 -9.46644 -8.18844 -6.28560 0.53880 0.58831 0.97152 1.40201 1.42003 1.50037 1.65434 1.76463 1.97029 2.27405 2.40986 2.98177 3.14327 3.43340 3.63921 3.90920 4.02928 4.06604 4.10083 4.17264 4.20936 4.23596 4.34615 4.42801 4.47092 4.53813 4.68153 4.68602 4.72232 4.78797 4.81737 4.86083 4.98565 5.02872 5.15434 5.20167 5.22860 5.31939 5.45185 5.52919 5.63666 5.65292 5.66999 5.71606 5.79939 5.92118 6.16188 6.19249 6.20590 6.23954 6.78502 6.83523 7.22775 7.40159 7.70665 8.91619 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008090 B = 0.002776 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.157535 B =10083.548570 C =12705.765827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.386 5.386 3 C 0.059 3.941 4 C -0.284 4.284 5 C 0.061 3.939 6 C -0.037 4.037 7 C 0.158 3.842 8 N -0.733 5.733 9 C 0.701 3.299 10 O -0.641 6.641 11 N -0.710 5.710 12 C 0.219 3.781 13 H 0.052 0.948 14 C 0.039 3.961 15 C -0.529 4.529 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.278 1.278 23 C -0.098 4.098 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.135 4.135 29 N -0.342 5.342 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.215 0.785 34 H 0.169 0.831 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.413 0.587 40 H 0.406 0.594 41 H 0.015 0.985 42 H 0.004 0.996 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 24.933 -1.293 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.168 5.168 3 C -0.087 4.087 4 C -0.313 4.313 5 C -0.104 4.104 6 C -0.076 4.076 7 C 0.033 3.967 8 N -0.390 5.390 9 C 0.400 3.600 10 O -0.524 6.524 11 N -0.363 5.363 12 C 0.113 3.887 13 H 0.070 0.930 14 C 0.002 3.998 15 C -0.567 4.567 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.204 1.204 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.153 4.153 29 N -0.166 5.166 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.232 0.768 34 H 0.187 0.813 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.249 0.751 40 H 0.241 0.759 41 H 0.033 0.967 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.169 0.831 47 H 0.161 0.839 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.865 23.693 -0.575 25.672 hybrid contribution 0.475 -0.435 -1.236 1.394 sum -9.391 23.258 -1.810 25.148 Atomic orbital electron populations 1.22162 0.72382 1.05853 1.04328 1.48895 1.07917 1.03573 1.56440 1.23243 0.90708 0.94734 1.00013 1.21773 0.98642 0.93514 1.17345 1.22320 0.92878 0.95155 1.00095 1.20146 0.94071 0.95376 0.98027 1.20897 0.86476 0.90885 0.98482 1.44857 1.26261 1.36853 1.31020 1.16123 0.82062 0.79728 0.82049 1.90845 1.45207 1.74538 1.41761 1.44890 1.22958 1.36622 1.31856 1.19563 0.97933 0.86950 0.84271 0.92954 1.19125 0.94085 0.91577 0.95025 1.21355 1.03127 1.15621 1.16582 0.93119 1.25753 0.95457 0.97687 0.99782 1.70061 1.15235 1.28347 1.42829 0.85653 0.78214 0.78341 0.79713 1.19106 1.20710 1.20352 1.20507 0.96975 0.97424 0.95074 1.21068 0.95969 0.96912 0.99757 1.21447 1.00295 1.00212 0.92299 1.21466 0.97196 0.97952 0.98166 1.21379 0.97084 0.97329 0.98510 1.21175 1.00565 1.00730 0.92879 1.77316 1.02555 1.10102 1.26620 0.90091 0.86008 0.89969 0.76797 0.81347 0.86366 0.88802 0.94234 0.93276 0.75065 0.75860 0.96669 0.97724 0.92703 0.85964 0.83455 0.83078 0.83948 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.47 127.77 1.47 2.39 16 2 N -0.39 -7.19 4.01 -369.55 -1.48 -8.67 16 3 C 0.06 0.82 11.49 83.54 0.96 1.78 16 4 C -0.28 -4.81 10.72 21.99 0.24 -4.58 16 5 C 0.06 1.39 6.49 43.10 0.28 1.67 16 6 C -0.04 -0.72 5.91 29.85 0.18 -0.54 16 7 C 0.16 4.40 5.63 86.38 0.49 4.88 16 8 N -0.73 -21.15 5.56 -478.52 -2.66 -23.81 16 9 C 0.70 27.52 8.52 179.06 1.53 29.05 16 10 O -0.64 -31.08 16.01 -4.01 -0.06 -31.14 16 11 N -0.71 -27.53 4.05 -461.41 -1.87 -29.40 16 12 C 0.22 9.79 2.11 44.24 0.09 9.88 16 13 H 0.05 2.66 7.44 -2.39 -0.02 2.64 16 14 C 0.04 2.02 4.49 29.85 0.13 2.16 16 15 C -0.53 -29.38 8.84 25.60 0.23 -29.16 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.67 5.46 84.66 0.46 1.13 16 18 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 19 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 C -0.10 -3.95 4.91 -19.86 -0.10 -4.05 16 24 C -0.12 -4.10 9.32 22.27 0.21 -3.89 16 25 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 26 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 27 C -0.13 -3.80 10.05 22.27 0.22 -3.57 16 28 C -0.13 -5.10 9.67 22.27 0.22 -4.88 16 29 N -0.34 -9.05 12.54 -47.39 -0.59 -9.65 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.12 1.59 8.12 -2.38 -0.02 1.57 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 8.82 8.49 -92.71 -0.79 8.04 16 40 H 0.41 13.93 8.62 -92.71 -0.80 13.13 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 43 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.12 3.91 7.73 -2.91 -0.02 3.89 16 45 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 48 H 0.11 4.19 8.04 -2.91 -0.02 4.17 16 Total: -1.00 -82.43 411.40 2.07 -80.36 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.61 Total: 34.54 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 7.04 Total: -4.30 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -6.32 Total: -125.75 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.06 Total: -31.14 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -82.43 2.07 -80.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354854303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.100 kcal (2) G-P(sol) polarization free energy of solvation -82.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds