Wall clock time and date at job start Wed Apr 1 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28450 * 124.15623 * 2 1 4 4 C 1.32142 * 111.39382 * 179.97438 * 3 2 1 5 5 C 1.40927 * 135.41914 * 180.29705 * 4 3 2 6 6 C 1.35829 * 119.53938 * 180.14663 * 5 4 3 7 7 C 1.39477 * 121.84004 * 359.51188 * 6 5 4 8 8 C 1.36072 * 121.57358 * 0.24481 * 7 6 5 9 9 C 1.40055 * 119.46794 * 0.02562 * 8 7 6 10 10 C 1.36196 * 124.16009 * 179.97438 * 2 1 3 11 11 C 1.46421 * 126.85612 * 0.04987 * 10 2 1 12 12 O 1.21735 * 119.99524 * 268.35609 * 11 10 2 13 13 N 1.34773 * 120.00487 * 88.35732 * 11 10 2 14 14 C 1.46496 * 120.00273 * 184.64380 * 13 11 10 15 15 C 1.53000 * 109.47299 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.49396 * 55.00134 * 15 14 13 17 17 C 1.53040 * 109.49650 * 175.06275 * 15 14 13 18 18 C 1.53039 * 109.53696 * 181.31965 * 17 15 14 19 19 C 1.53190 * 109.30962 * 298.63237 * 18 17 15 20 20 N 1.46920 * 108.77684 * 54.63913 * 19 18 17 21 21 C 1.36936 * 120.63510 * 126.38897 * 20 19 18 22 22 H 1.08003 * 120.00070 * 211.33467 * 21 20 19 23 23 C 1.38814 * 119.99926 * 31.33288 * 21 20 19 24 24 N 1.31611 * 120.00123 * 10.81230 * 23 21 20 25 25 Si 1.86804 * 119.99932 * 190.80933 * 23 21 20 26 26 H 1.48501 * 109.46661 * 60.00341 * 25 23 21 27 27 H 1.48496 * 109.46858 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47443 * 300.00358 * 25 23 21 29 29 C 1.46937 * 118.76474 * 306.40938 * 20 19 18 30 30 H 1.09007 * 109.47454 * 85.21409 * 1 2 3 31 31 H 1.09005 * 109.47141 * 205.21365 * 1 2 3 32 32 H 1.09003 * 109.47385 * 325.21416 * 1 2 3 33 33 H 1.07996 * 120.23355 * 359.97438 * 5 4 3 34 34 H 1.08007 * 119.07446 * 179.75961 * 6 5 4 35 35 H 1.08007 * 119.21253 * 180.23110 * 7 6 5 36 36 H 1.07999 * 120.26606 * 179.97438 * 8 7 6 37 37 H 0.96994 * 119.99892 * 4.64077 * 13 11 10 38 38 H 1.09005 * 109.47055 * 300.00365 * 14 13 11 39 39 H 1.08999 * 109.47189 * 59.99717 * 14 13 11 40 40 H 1.09001 * 109.46495 * 301.34000 * 17 15 14 41 41 H 1.09003 * 109.45970 * 61.31150 * 17 15 14 42 42 H 1.08988 * 109.50042 * 58.58592 * 18 17 15 43 43 H 1.09005 * 109.49495 * 178.68651 * 18 17 15 44 44 H 1.08999 * 109.58821 * 174.42635 * 19 18 17 45 45 H 1.09002 * 109.59151 * 294.70406 * 19 18 17 46 46 H 0.96997 * 120.00599 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.56171 * 293.78952 * 29 20 19 48 48 H 1.08999 * 109.61953 * 173.35568 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1861 1.0629 0.0000 4 6 3.4749 0.7710 0.0006 5 6 4.6724 1.5140 0.0059 6 6 5.8645 0.8630 0.0016 7 6 5.9423 -0.5296 0.0020 8 6 4.8246 -1.3057 0.0018 9 6 3.5632 -0.6970 0.0006 10 6 2.2297 -1.1270 0.0005 11 6 1.7534 -2.5115 0.0001 12 8 1.5833 -3.0969 1.0538 13 7 1.5033 -3.1379 -1.1667 14 6 0.9308 -4.4864 -1.1663 15 6 0.7474 -4.9631 -2.6085 16 1 1.6978 -4.8949 -3.1378 17 6 0.2656 -6.4157 -2.6089 18 6 0.1133 -6.9039 -4.0514 19 6 -0.9345 -6.0468 -4.7683 20 7 -0.5526 -4.6333 -4.6470 21 6 -0.4406 -3.8427 -5.7595 22 1 0.2750 -3.0340 -5.7775 23 6 -1.2468 -4.0808 -6.8641 24 7 -2.2580 -4.9183 -6.7727 25 14 -0.8966 -3.2125 -8.4806 26 1 0.4672 -3.5685 -8.9483 27 1 -1.8946 -3.6350 -9.4958 28 1 -0.9841 -1.7434 -8.2825 29 6 -0.2926 -4.0834 -3.3094 30 1 -0.3634 0.0857 -1.0241 31 1 -0.3634 -0.9298 0.4378 32 1 -0.3634 0.8440 0.5863 33 1 4.6425 2.5936 0.0107 34 1 6.7776 1.4398 0.0018 35 1 6.9129 -1.0033 0.0022 36 1 4.9094 -2.3823 0.0017 37 1 1.7024 -2.6959 -2.0068 38 1 1.6021 -5.1659 -0.6411 39 1 -0.0362 -4.4704 -0.6635 40 1 0.9926 -7.0397 -2.0892 41 1 -0.6966 -6.4793 -2.1007 42 1 1.0692 -6.8173 -4.5676 43 1 -0.2075 -7.9457 -4.0508 44 1 -0.9758 -6.3250 -5.8214 45 1 -1.9111 -6.2043 -4.3104 46 1 -2.8216 -5.0844 -7.5444 47 1 -1.2164 -4.0784 -2.7309 48 1 0.0900 -3.0668 -3.3997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361485021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:19 Heat of formation + Delta-G solvation = 77.350918 kcal Electronic energy + Delta-G solvation = -29676.777066 eV Core-core repulsion = 25733.626092 eV Total energy + Delta-G solvation = -3943.150973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.64887 -39.64248 -37.91535 -37.80943 -34.97164 -33.19916 -32.94197 -32.16933 -30.62437 -30.48752 -29.54380 -27.73404 -25.82109 -25.33206 -23.59032 -22.65414 -22.39784 -22.00946 -20.99239 -19.96793 -19.12005 -18.06441 -17.66176 -16.79983 -16.73797 -16.43304 -15.85709 -15.26097 -15.09721 -14.85828 -14.36853 -14.26165 -14.11714 -13.83500 -13.51798 -13.47643 -13.38651 -13.22471 -12.87841 -12.44142 -12.34643 -12.24843 -12.03295 -11.91372 -11.89383 -11.39679 -11.03016 -10.80650 -10.61363 -10.50021 -10.48196 -10.31652 -10.26305 -10.21246 -9.98910 -9.66696 -9.51334 -9.16373 -8.83981 -8.54214 -7.91514 -6.69715 -5.85317 -3.34224 0.37731 1.48159 1.78775 2.19685 2.47260 3.05233 3.32542 3.38592 3.39104 3.65870 3.89824 4.31015 4.41204 4.66073 4.75110 4.78740 4.88699 4.96828 5.00424 5.08731 5.19358 5.21169 5.34347 5.34927 5.38080 5.52255 5.54207 5.72465 5.80173 5.84527 5.90476 6.13102 6.17838 6.19848 6.25594 6.28512 6.31639 6.39865 6.42462 6.50978 6.62772 6.68701 6.73994 6.78932 6.86615 7.28901 7.35188 7.64046 7.71528 7.72793 7.91469 8.40223 9.14979 9.76186 10.34076 11.22379 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.002870 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.952005 B = 9753.960996 C =10704.049875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.214 5.214 3 N -0.287 5.287 4 C 0.058 3.942 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.129 4.129 8 C -0.062 4.062 9 C -0.127 4.127 10 C -0.021 4.021 11 C 0.592 3.408 12 O -0.523 6.523 13 N -0.706 5.706 14 C 0.125 3.875 15 C -0.119 4.119 16 H 0.075 0.925 17 C -0.099 4.099 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.257 4.257 22 H 0.062 0.938 23 C 0.007 3.993 24 N -0.903 5.903 25 Si 0.904 3.096 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.154 3.846 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.018 0.982 46 H 0.255 0.745 47 H 0.019 0.981 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 6.731 13.635 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N 0.003 4.997 3 N -0.123 5.123 4 C -0.087 4.087 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.148 4.148 8 C -0.082 4.082 9 C -0.136 4.136 10 C -0.158 4.158 11 C 0.374 3.626 12 O -0.398 6.398 13 N -0.357 5.357 14 C 0.002 3.998 15 C -0.140 4.140 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.387 4.387 22 H 0.080 0.920 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.734 3.266 26 H -0.209 1.209 27 H -0.215 1.215 28 H -0.209 1.209 29 C 0.027 3.973 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.036 0.964 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.541 7.191 14.235 18.584 hybrid contribution 0.608 0.002 -1.289 1.425 sum 10.149 7.193 12.946 17.953 Atomic orbital electron populations 1.22498 0.72084 1.06177 1.05929 1.45721 1.08329 1.01591 1.44053 1.73439 1.03474 1.10643 1.24754 1.20596 0.91060 0.92265 1.04751 1.19885 0.88537 0.99170 1.02178 1.20615 0.97230 0.94529 0.99893 1.20653 0.98169 0.93706 1.02300 1.20070 0.89716 0.99601 0.98858 1.19355 0.91683 0.93975 1.08547 1.21018 0.91294 0.88942 1.14521 1.16721 0.77712 0.83674 0.84515 1.90885 1.51232 1.66456 1.31245 1.46126 1.63009 1.18457 1.08119 1.21609 0.98364 0.81362 0.98466 1.21986 1.01556 0.97494 0.92931 0.90704 1.21335 1.00208 0.94133 0.98024 1.22187 1.01738 0.98959 0.95297 1.20807 0.92013 0.82241 1.00538 1.43971 1.80724 1.06248 1.00340 1.19096 1.14746 1.12502 0.92368 0.91990 1.25151 0.95288 0.99230 0.99556 1.69960 1.16960 1.38081 1.29702 0.86358 0.77509 0.79395 0.83388 1.20908 1.21531 1.20861 1.20901 0.94228 0.94521 0.87612 0.88060 0.88067 0.87578 0.85292 0.85481 0.85710 0.85856 0.75662 0.91354 0.91163 0.93355 0.92432 0.92757 0.93138 0.89445 0.96430 0.93469 0.96365 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 11.12 59.84 0.67 1.30 16 2 N -0.21 -2.70 3.71 -63.75 -0.24 -2.93 16 3 N -0.29 -3.95 11.88 33.21 0.39 -3.55 16 4 C 0.06 0.78 7.53 -83.14 -0.63 0.15 16 5 C -0.08 -0.83 10.09 -39.43 -0.40 -1.23 16 6 C -0.10 -0.92 9.89 -39.98 -0.40 -1.31 16 7 C -0.13 -1.24 9.92 -39.90 -0.40 -1.63 16 8 C -0.06 -0.72 10.06 -39.68 -0.40 -1.12 16 9 C -0.13 -1.73 6.41 -104.93 -0.67 -2.40 16 10 C -0.02 -0.29 6.70 -81.93 -0.55 -0.84 16 11 C 0.59 8.25 6.84 -12.97 -0.09 8.16 16 12 O -0.52 -8.80 17.12 5.16 0.09 -8.72 16 13 N -0.71 -8.94 5.32 -61.70 -0.33 -9.27 16 14 C 0.13 1.65 5.07 -4.04 -0.02 1.63 16 15 C -0.12 -1.81 2.37 -90.50 -0.21 -2.03 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.52 5.17 -26.69 -0.14 -1.66 16 18 C -0.14 -2.56 6.08 -26.61 -0.16 -2.73 16 19 C 0.17 3.87 5.25 -3.71 -0.02 3.85 16 20 N -0.59 -13.94 2.99 -172.32 -0.51 -14.45 16 21 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 22 H 0.06 1.59 7.85 -52.48 -0.41 1.18 16 23 C 0.01 0.18 5.05 -17.43 -0.09 0.09 16 24 N -0.90 -25.42 11.06 55.49 0.61 -24.81 16 25 Si 0.90 21.09 29.57 -169.99 -5.03 16.06 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.15 2.91 5.60 -3.71 -0.02 2.89 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.84 7.55 -51.93 -0.39 0.45 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.41 4.93 7.68 -40.82 -0.31 4.61 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 1.00 8.14 -51.94 -0.42 0.58 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 2.26 6.10 -51.93 -0.32 1.94 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.88 7.14 -51.93 -0.37 0.51 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -32.45 392.14 -10.05 -42.50 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.28 Total: 3.04 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.67 Total: -3.77 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.07 Total: -55.01 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.45 -10.05 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361485021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.847 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds