Wall clock time and date at job start Wed Apr 1 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28450 * 124.15623 * 2 1 4 4 C 1.32142 * 111.39382 * 179.97438 * 3 2 1 5 5 C 1.40927 * 135.41914 * 180.29705 * 4 3 2 6 6 C 1.35829 * 119.53938 * 180.14663 * 5 4 3 7 7 C 1.39477 * 121.84004 * 359.51188 * 6 5 4 8 8 C 1.36072 * 121.57358 * 0.24481 * 7 6 5 9 9 C 1.40055 * 119.46794 * 0.02562 * 8 7 6 10 10 C 1.36196 * 124.16009 * 179.97438 * 2 1 3 11 11 C 1.46421 * 126.85612 * 0.04987 * 10 2 1 12 12 O 1.21735 * 119.99524 * 268.35609 * 11 10 2 13 13 N 1.34773 * 120.00487 * 88.35732 * 11 10 2 14 14 C 1.46496 * 120.00273 * 184.64380 * 13 11 10 15 15 C 1.53000 * 109.47299 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.49396 * 55.00134 * 15 14 13 17 17 C 1.53040 * 109.49650 * 175.06275 * 15 14 13 18 18 C 1.53039 * 109.53696 * 181.31965 * 17 15 14 19 19 C 1.53190 * 109.30962 * 298.63237 * 18 17 15 20 20 N 1.46920 * 108.77684 * 54.63913 * 19 18 17 21 21 C 1.36936 * 120.63510 * 126.38897 * 20 19 18 22 22 H 1.08003 * 120.00070 * 211.33467 * 21 20 19 23 23 C 1.38814 * 119.99926 * 31.33288 * 21 20 19 24 24 N 1.31611 * 120.00123 * 10.81230 * 23 21 20 25 25 Si 1.86804 * 119.99932 * 190.80933 * 23 21 20 26 26 H 1.48501 * 109.46661 * 60.00341 * 25 23 21 27 27 H 1.48496 * 109.46858 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47443 * 300.00358 * 25 23 21 29 29 C 1.46937 * 118.76474 * 306.40938 * 20 19 18 30 30 H 1.09007 * 109.47454 * 85.21409 * 1 2 3 31 31 H 1.09005 * 109.47141 * 205.21365 * 1 2 3 32 32 H 1.09003 * 109.47385 * 325.21416 * 1 2 3 33 33 H 1.07996 * 120.23355 * 359.97438 * 5 4 3 34 34 H 1.08007 * 119.07446 * 179.75961 * 6 5 4 35 35 H 1.08007 * 119.21253 * 180.23110 * 7 6 5 36 36 H 1.07999 * 120.26606 * 179.97438 * 8 7 6 37 37 H 0.96994 * 119.99892 * 4.64077 * 13 11 10 38 38 H 1.09005 * 109.47055 * 300.00365 * 14 13 11 39 39 H 1.08999 * 109.47189 * 59.99717 * 14 13 11 40 40 H 1.09001 * 109.46495 * 301.34000 * 17 15 14 41 41 H 1.09003 * 109.45970 * 61.31150 * 17 15 14 42 42 H 1.08988 * 109.50042 * 58.58592 * 18 17 15 43 43 H 1.09005 * 109.49495 * 178.68651 * 18 17 15 44 44 H 1.08999 * 109.58821 * 174.42635 * 19 18 17 45 45 H 1.09002 * 109.59151 * 294.70406 * 19 18 17 46 46 H 0.96997 * 120.00599 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.56171 * 293.78952 * 29 20 19 48 48 H 1.08999 * 109.61953 * 173.35568 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1861 1.0629 0.0000 4 6 3.4749 0.7710 0.0006 5 6 4.6724 1.5140 0.0059 6 6 5.8645 0.8630 0.0016 7 6 5.9423 -0.5296 0.0020 8 6 4.8246 -1.3057 0.0018 9 6 3.5632 -0.6970 0.0006 10 6 2.2297 -1.1270 0.0005 11 6 1.7534 -2.5115 0.0001 12 8 1.5833 -3.0969 1.0538 13 7 1.5033 -3.1379 -1.1667 14 6 0.9308 -4.4864 -1.1663 15 6 0.7474 -4.9631 -2.6085 16 1 1.6978 -4.8949 -3.1378 17 6 0.2656 -6.4157 -2.6089 18 6 0.1133 -6.9039 -4.0514 19 6 -0.9345 -6.0468 -4.7683 20 7 -0.5526 -4.6333 -4.6470 21 6 -0.4406 -3.8427 -5.7595 22 1 0.2750 -3.0340 -5.7775 23 6 -1.2468 -4.0808 -6.8641 24 7 -2.2580 -4.9183 -6.7727 25 14 -0.8966 -3.2125 -8.4806 26 1 0.4672 -3.5685 -8.9483 27 1 -1.8946 -3.6350 -9.4958 28 1 -0.9841 -1.7434 -8.2825 29 6 -0.2926 -4.0834 -3.3094 30 1 -0.3634 0.0857 -1.0241 31 1 -0.3634 -0.9298 0.4378 32 1 -0.3634 0.8440 0.5863 33 1 4.6425 2.5936 0.0107 34 1 6.7776 1.4398 0.0018 35 1 6.9129 -1.0033 0.0022 36 1 4.9094 -2.3823 0.0017 37 1 1.7024 -2.6959 -2.0068 38 1 1.6021 -5.1659 -0.6411 39 1 -0.0362 -4.4704 -0.6635 40 1 0.9926 -7.0397 -2.0892 41 1 -0.6966 -6.4793 -2.1007 42 1 1.0692 -6.8173 -4.5676 43 1 -0.2075 -7.9457 -4.0508 44 1 -0.9758 -6.3250 -5.8214 45 1 -1.9111 -6.2043 -4.3104 46 1 -2.8216 -5.0844 -7.5444 47 1 -1.2164 -4.0784 -2.7309 48 1 0.0900 -3.0668 -3.3997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361485021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:18 Heat of formation + Delta-G solvation = 57.789491 kcal Electronic energy + Delta-G solvation = -29677.625313 eV Core-core repulsion = 25733.626092 eV Total energy + Delta-G solvation = -3943.999221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.55738 -40.78680 -39.32613 -38.66860 -36.35348 -34.75446 -33.85077 -33.08032 -32.29113 -31.94513 -30.50713 -28.52645 -27.30368 -26.96090 -24.55814 -23.86324 -23.48114 -23.24095 -22.34239 -21.15731 -20.44082 -19.07148 -18.62213 -18.46396 -17.74060 -17.35351 -16.88413 -16.85062 -16.39043 -16.01979 -15.70048 -15.38437 -15.14212 -15.06279 -15.02265 -14.52117 -14.41765 -14.24048 -14.01252 -13.90173 -13.76260 -13.59852 -13.04467 -12.82773 -12.79655 -12.72158 -12.65835 -12.53452 -12.33864 -11.99460 -11.82851 -11.65817 -11.54166 -11.38119 -11.23357 -11.19724 -11.09571 -10.54604 -10.27150 -9.68315 -8.78966 -8.62260 -7.86792 -5.37970 -0.48328 0.63017 0.83347 1.29202 1.46276 1.47708 1.50145 1.54226 2.03793 2.49388 2.83640 3.05423 3.28933 3.33928 3.58964 3.87338 3.94307 3.97850 4.00498 4.06038 4.11964 4.14095 4.22810 4.39741 4.42158 4.44159 4.55453 4.56859 4.60625 4.74875 4.82522 4.86847 4.89775 4.99698 5.06399 5.11779 5.14528 5.29893 5.33955 5.35963 5.43642 5.49416 5.56393 5.57575 5.61793 5.67159 5.81640 5.98884 6.21976 6.41159 6.79555 6.84284 7.16171 7.86287 8.38415 9.18311 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.002870 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.952005 B = 9753.960996 C =10704.049875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.215 5.215 3 N -0.303 5.303 4 C 0.034 3.966 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.089 4.089 9 C -0.143 4.143 10 C -0.043 4.043 11 C 0.604 3.396 12 O -0.555 6.555 13 N -0.697 5.697 14 C 0.135 3.865 15 C -0.102 4.102 16 H 0.074 0.926 17 C -0.096 4.096 18 C -0.131 4.131 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.263 4.263 22 H 0.066 0.934 23 C -0.047 4.047 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.277 1.277 27 H -0.295 1.295 28 H -0.276 1.276 29 C 0.153 3.847 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.411 0.589 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.050 0.950 45 H -0.006 1.006 46 H 0.249 0.751 47 H 0.012 0.988 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.223 7.327 14.490 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N 0.002 4.998 3 N -0.141 5.141 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.136 4.136 8 C -0.110 4.110 9 C -0.152 4.152 10 C -0.180 4.180 11 C 0.387 3.613 12 O -0.432 6.432 13 N -0.348 5.348 14 C 0.012 3.988 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.170 4.170 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.394 4.394 22 H 0.083 0.917 23 C -0.243 4.243 24 N -0.581 5.581 25 Si 0.793 3.207 26 H -0.203 1.203 27 H -0.221 1.221 28 H -0.202 1.202 29 C 0.027 3.973 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.146 0.854 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.012 0.988 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.975 7.798 15.099 20.789 hybrid contribution -0.089 -0.132 -1.526 1.534 sum 11.886 7.665 13.573 19.603 Atomic orbital electron populations 1.22766 0.70521 1.07122 1.06986 1.45988 1.09257 1.01074 1.43513 1.73377 1.04005 1.11235 1.25461 1.21101 0.91689 0.92783 1.05385 1.20263 0.88225 1.00200 1.02530 1.21068 0.98004 0.94643 0.97788 1.21099 0.98828 0.94050 0.99656 1.20301 0.89763 1.00257 1.00637 1.19709 0.92354 0.94395 1.08713 1.20982 0.91804 0.88933 1.16262 1.16655 0.76888 0.83680 0.84094 1.90862 1.52841 1.67231 1.32281 1.46042 1.62414 1.18262 1.08047 1.21477 0.98819 0.81675 0.96818 1.21740 0.99949 0.96851 0.93688 0.90748 1.21329 1.01378 0.94382 0.96294 1.22013 0.99602 0.99014 0.96420 1.20625 0.92714 0.83101 0.98769 1.44227 1.80878 1.06579 1.01554 1.19448 1.14170 1.12350 0.93406 0.91661 1.25866 0.95442 1.00362 1.02606 1.70129 1.18099 1.39810 1.30067 0.85391 0.77156 0.78529 0.79647 1.20328 1.22143 1.20193 1.21032 0.95051 0.95540 0.85651 0.87050 0.87858 0.85798 0.83598 0.81872 0.82683 0.85402 0.75214 0.90086 0.91076 0.90035 0.92260 0.93081 0.91286 0.93144 0.98754 0.94144 0.96982 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 11.12 127.77 1.42 2.53 16 2 N -0.21 -5.39 3.71 -355.62 -1.32 -6.71 16 3 N -0.30 -8.31 11.88 -48.85 -0.58 -8.89 16 4 C 0.03 0.90 7.53 42.07 0.32 1.22 16 5 C -0.09 -1.82 10.09 22.37 0.23 -1.59 16 6 C -0.09 -1.42 9.89 22.01 0.22 -1.20 16 7 C -0.12 -1.93 9.92 22.06 0.22 -1.71 16 8 C -0.09 -1.97 10.06 22.21 0.22 -1.75 16 9 C -0.14 -3.84 6.41 -20.07 -0.13 -3.96 16 10 C -0.04 -1.18 6.70 41.05 0.28 -0.90 16 11 C 0.60 16.51 6.84 86.37 0.59 17.10 16 12 O -0.55 -18.41 17.12 -4.46 -0.08 -18.49 16 13 N -0.70 -16.84 5.32 -467.32 -2.49 -19.33 16 14 C 0.14 3.29 5.07 86.38 0.44 3.73 16 15 C -0.10 -2.91 2.37 -10.72 -0.03 -2.94 16 16 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.10 -2.71 5.17 30.62 0.16 -2.55 16 18 C -0.13 -4.57 6.08 30.67 0.19 -4.38 16 19 C 0.17 8.07 5.25 86.36 0.45 8.53 16 20 N -0.61 -29.01 2.99 -699.08 -2.09 -31.09 16 21 C -0.26 -13.94 9.58 84.03 0.81 -13.14 16 22 H 0.07 3.34 7.85 -2.91 -0.02 3.32 16 23 C -0.05 -2.57 5.05 84.86 0.43 -2.14 16 24 N -0.94 -54.31 11.06 21.65 0.24 -54.07 16 25 Si 0.96 43.88 29.57 68.60 2.03 45.91 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 27 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 29 C 0.15 5.68 5.60 86.36 0.48 6.16 16 30 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.10 1.70 7.55 -2.38 -0.02 1.68 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.41 9.53 7.68 -92.71 -0.71 8.81 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 44 H 0.05 2.70 6.10 -2.39 -0.01 2.69 16 45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.05 1.87 7.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.99 392.14 2.26 -69.73 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.26 Total: 19.96 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.29 Total: 3.00 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.24 Total: -120.11 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.08 Total: -18.49 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.99 2.26 -69.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361485021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.517 kcal (2) G-P(sol) polarization free energy of solvation -71.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds