Wall clock time and date at job start Wed Apr 1 2020 01:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46960 * 2 1 4 4 C 1.46496 * 120.00075 * 89.99924 * 3 2 1 5 5 C 1.50691 * 109.47431 * 269.99837 * 4 3 2 6 6 H 1.08004 * 119.99689 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00507 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99423 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00257 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47086 * 60.00267 * 9 7 5 11 11 H 1.48501 * 109.47109 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47325 * 299.99981 * 9 7 5 13 13 C 1.34776 * 119.99817 * 270.00013 * 3 2 1 14 14 O 1.21281 * 119.99930 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00268 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47510 * 180.02562 * 15 13 3 17 17 C 1.46843 * 111.00236 * 63.75095 * 16 15 13 18 18 C 1.53037 * 109.52430 * 174.16476 * 17 16 15 19 19 C 1.53117 * 109.27768 * 59.18109 * 18 17 16 20 20 H 1.09000 * 109.52700 * 62.31593 * 19 18 17 21 21 O 1.42900 * 109.52233 * 182.44532 * 19 18 17 22 22 C 1.42907 * 113.99606 * 269.99982 * 21 19 18 23 23 C 1.53118 * 109.16005 * 302.34339 * 19 18 17 24 24 C 1.46849 * 110.99357 * 299.54497 * 16 15 13 25 25 H 1.08995 * 109.46411 * 65.82321 * 24 16 15 26 26 C 1.50700 * 109.46543 * 305.85054 * 24 16 15 27 27 O 1.20829 * 119.99858 * 330.98229 * 26 24 16 28 28 O 1.34233 * 120.00113 * 150.97368 * 26 24 16 29 29 C 1.45196 * 117.00026 * 180.02562 * 28 26 24 30 30 H 1.08994 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46873 * 299.99935 * 1 2 3 32 32 H 1.08998 * 109.47010 * 60.00219 * 1 2 3 33 33 H 1.08997 * 109.46873 * 240.00065 * 2 1 3 34 34 H 1.08998 * 109.47010 * 119.99781 * 2 1 3 35 35 H 1.09000 * 109.46927 * 149.99789 * 4 3 2 36 36 H 1.08999 * 109.47216 * 30.00082 * 4 3 2 37 37 H 0.97006 * 119.99502 * 180.02562 * 8 7 5 38 38 H 1.09009 * 109.46914 * 300.00101 * 15 13 3 39 39 H 1.08998 * 109.47145 * 60.00109 * 15 13 3 40 40 H 1.08998 * 109.46344 * 294.18241 * 17 16 15 41 41 H 1.08999 * 109.45843 * 54.15976 * 17 16 15 42 42 H 1.08994 * 109.50278 * 179.12255 * 18 17 16 43 43 H 1.09007 * 109.50147 * 299.23783 * 18 17 16 44 44 H 1.09000 * 109.46925 * 299.99398 * 22 21 19 45 45 H 1.08995 * 109.47194 * 60.00172 * 22 21 19 46 46 H 1.09002 * 109.46898 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.50268 * 177.59256 * 23 19 18 48 48 H 1.09001 * 109.51058 * 297.67440 * 23 19 18 49 49 H 1.08998 * 109.47494 * 180.02562 * 29 28 26 50 50 H 1.09004 * 109.47431 * 300.00204 * 29 28 26 51 51 H 1.08997 * 109.47689 * 59.99802 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0068 2.7823 1.7037 6 1 0.1157 2.7247 1.0961 7 6 0.9949 3.5049 2.8779 8 7 2.0798 3.5745 3.6180 9 14 -0.5615 4.3861 3.4168 10 1 -1.6546 3.3965 3.5935 11 1 -0.3144 5.0850 4.7035 12 1 -0.9531 5.3766 2.3821 13 6 2.2430 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9913 1.3064 -2.4723 16 7 2.3101 2.2061 -3.5889 17 6 3.7372 2.5521 -3.5950 18 6 4.0602 3.3683 -4.8486 19 6 3.2075 4.6400 -4.8574 20 1 3.4577 5.2524 -3.9911 21 8 3.4634 5.3782 -6.0540 22 6 4.5266 6.3258 -5.9361 23 6 1.7271 4.2529 -4.8019 24 6 1.4717 3.4111 -3.5495 25 1 1.7172 3.9955 -2.6628 26 6 0.0196 3.0112 -3.5010 27 8 -0.3382 1.9726 -4.0044 28 8 -0.8764 3.8086 -2.8984 29 6 -2.2572 3.3597 -2.8892 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.0644 2.7985 1.1383 36 1 2.5506 1.3453 2.0284 37 1 2.0714 4.0826 4.4443 38 1 2.6212 0.4186 -2.5302 39 1 0.9432 1.0126 -2.5299 40 1 3.9720 3.1405 -2.7080 41 1 4.3322 1.6389 -3.5930 42 1 5.1162 3.6382 -4.8450 43 1 3.8386 2.7753 -5.7360 44 1 4.2840 7.0491 -5.1577 45 1 5.4488 5.8065 -5.6752 46 1 4.6583 6.8441 -6.8860 47 1 1.1163 5.1549 -4.7648 48 1 1.4686 3.6745 -5.6888 49 1 -2.8748 4.0946 -2.3728 50 1 -2.6092 3.2461 -3.9145 51 1 -2.3245 2.4017 -2.3738 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373201248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:18 Heat of formation + Delta-G solvation = -148.877745 kcal Electronic energy + Delta-G solvation = -33174.393627 eV Core-core repulsion = 28881.830972 eV Total energy + Delta-G solvation = -4292.562655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99489 -39.53158 -38.68086 -37.02687 -36.10712 -35.25022 -32.96216 -32.42708 -31.42831 -30.04795 -28.41742 -27.73458 -26.90796 -25.88612 -24.22738 -23.31316 -22.82065 -22.29295 -20.93227 -19.88418 -18.52101 -17.69350 -16.97723 -16.70819 -16.51180 -16.39928 -16.10123 -15.45709 -15.32266 -15.14016 -14.92937 -14.67845 -14.50387 -14.20381 -13.65853 -13.36041 -13.32026 -13.22834 -12.86946 -12.83280 -12.41783 -12.27812 -12.19560 -11.98770 -11.91037 -11.76796 -11.52400 -11.36957 -11.23702 -11.07415 -10.91106 -10.78589 -10.75229 -10.69055 -10.58682 -10.52652 -10.18819 -10.08964 -9.76907 -9.59103 -9.55457 -8.46504 -7.89515 -7.74872 -6.08047 -4.12140 2.27260 2.70870 3.21655 3.28308 3.33040 3.36763 3.65816 3.85948 3.93042 4.41108 4.65902 4.73935 4.95617 5.01966 5.04849 5.13796 5.18778 5.24752 5.26570 5.26786 5.27429 5.32238 5.38747 5.42756 5.50981 5.57389 5.59193 5.65736 5.68905 5.73599 5.78974 5.85860 5.92117 5.95779 6.09647 6.11451 6.26371 6.31956 6.47572 6.70003 6.81819 6.95873 7.01708 7.11260 7.37275 7.48137 7.87663 7.91720 8.19366 8.31596 8.82138 8.97588 9.52585 11.00139 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.003991 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.641487 B = 7014.931052 C = 7250.068179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 N -0.591 5.591 4 C 0.245 3.755 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.473 3.527 14 O -0.543 6.543 15 C 0.020 3.980 16 N -0.495 5.495 17 C 0.044 3.956 18 C -0.134 4.134 19 C 0.092 3.908 20 H 0.068 0.932 21 O -0.385 6.385 22 C 0.031 3.969 23 C -0.098 4.098 24 C 0.078 3.922 25 H 0.119 0.881 26 C 0.471 3.529 27 O -0.496 6.496 28 O -0.352 6.352 29 C 0.037 3.963 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.061 0.939 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -2.175 -15.759 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.015 4.015 3 N -0.323 5.323 4 C 0.126 3.874 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.259 3.741 14 O -0.423 6.423 15 C -0.111 4.111 16 N -0.220 5.220 17 C -0.083 4.083 18 C -0.172 4.172 19 C 0.035 3.965 20 H 0.086 0.914 21 O -0.304 6.304 22 C -0.066 4.066 23 C -0.136 4.136 24 C -0.032 4.032 25 H 0.136 0.864 26 C 0.313 3.687 27 O -0.382 6.382 28 O -0.268 6.268 29 C -0.057 4.057 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.119 0.881 50 H 0.079 0.921 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.341 -2.090 -16.315 16.452 hybrid contribution -0.807 0.712 1.486 1.835 sum -0.466 -1.378 -14.829 14.900 Atomic orbital electron populations 1.22208 0.96243 1.01099 1.03157 1.21434 0.94678 0.83598 1.01828 1.48419 1.62622 1.13232 1.07989 1.19297 0.97556 0.92450 0.78094 1.21356 0.97375 1.31157 1.06186 0.92494 1.24913 0.96387 0.96236 0.96431 1.69920 1.27484 1.41655 1.14344 0.86614 0.83320 0.79971 0.77881 1.20279 1.21188 1.20121 1.21582 0.78826 0.87383 0.86297 1.90536 1.47160 1.17747 1.86903 1.22556 1.04741 0.96838 0.86988 1.62246 1.04780 1.13999 1.40941 1.22291 0.87109 1.00406 0.98543 1.22065 0.99520 0.96451 0.99188 1.22098 0.94491 0.92456 0.87495 0.91371 1.87881 1.53889 1.53613 1.34988 1.22781 0.89878 0.91732 1.02187 1.21490 0.95913 0.99388 0.96852 1.21461 0.86066 0.93561 1.02069 0.86401 1.23516 0.88997 0.81949 0.74286 1.90617 1.80681 1.24241 1.42680 1.86568 1.19425 1.49927 1.70878 1.23255 0.78544 1.01572 1.02360 0.92579 0.90544 0.93564 0.91872 0.90483 0.93945 0.95132 0.92698 0.87763 0.87449 0.90712 0.90220 0.91203 0.90330 0.93894 0.94027 0.89825 0.90088 0.89796 0.88103 0.92056 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.11 1.73 5.98 -4.04 -0.02 1.70 16 3 N -0.59 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.25 6.19 5.20 -5.20 -0.03 6.16 16 5 C -0.52 -14.30 8.92 -34.44 -0.31 -14.60 16 6 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.47 9.34 7.09 -10.99 -0.08 9.26 16 14 O -0.54 -12.31 11.19 5.56 0.06 -12.25 16 15 C 0.02 0.32 3.94 -4.98 -0.02 0.30 16 16 N -0.50 -7.59 4.46 -229.51 -1.02 -8.62 16 17 C 0.04 0.60 5.06 -3.84 -0.02 0.58 16 18 C -0.13 -1.61 5.71 -26.65 -0.15 -1.76 16 19 C 0.09 1.18 2.68 -26.61 -0.07 1.11 16 20 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 21 O -0.38 -4.79 10.35 -35.23 -0.36 -5.15 16 22 C 0.03 0.29 10.82 101.05 1.09 1.38 16 23 C -0.10 -1.36 5.01 -26.65 -0.13 -1.49 16 24 C 0.08 1.25 1.89 -68.87 -0.13 1.12 16 25 H 0.12 2.23 5.54 -51.93 -0.29 1.94 16 26 C 0.47 7.97 6.06 36.01 0.22 8.19 16 27 O -0.50 -8.79 14.93 -18.75 -0.28 -9.07 16 28 O -0.35 -5.86 10.57 -39.26 -0.41 -6.27 16 29 C 0.04 0.47 10.56 101.05 1.07 1.53 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.40 7.26 -51.93 -0.38 1.03 16 32 H 0.05 0.74 7.22 -51.93 -0.37 0.37 16 33 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 34 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 35 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 36 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.10 1.39 7.36 -51.92 -0.38 1.01 16 39 H 0.11 1.78 5.01 -51.93 -0.26 1.52 16 40 H 0.07 1.23 5.81 -51.93 -0.30 0.92 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 43 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 45 H 0.04 0.35 7.94 -51.93 -0.41 -0.06 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 51 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -32.65 401.25 -7.49 -40.14 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.50 Total: 3.63 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 1.70 Total: 12.88 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.72 Total: -46.44 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.00 Total: -32.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.65 -7.49 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373201248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.736 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds