Wall clock time and date at job start Wed Apr 1 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46960 * 2 1 4 4 C 1.46496 * 120.00075 * 89.99924 * 3 2 1 5 5 C 1.50691 * 109.47431 * 269.99837 * 4 3 2 6 6 H 1.08004 * 119.99689 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00507 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99423 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00257 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47086 * 60.00267 * 9 7 5 11 11 H 1.48501 * 109.47109 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47325 * 299.99981 * 9 7 5 13 13 C 1.34776 * 119.99817 * 270.00013 * 3 2 1 14 14 O 1.21281 * 119.99930 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00268 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47510 * 180.02562 * 15 13 3 17 17 C 1.46843 * 111.00236 * 63.75095 * 16 15 13 18 18 C 1.53037 * 109.52430 * 174.16476 * 17 16 15 19 19 C 1.53117 * 109.27768 * 59.18109 * 18 17 16 20 20 H 1.09000 * 109.52700 * 62.31593 * 19 18 17 21 21 O 1.42900 * 109.52233 * 182.44532 * 19 18 17 22 22 C 1.42907 * 113.99606 * 269.99982 * 21 19 18 23 23 C 1.53118 * 109.16005 * 302.34339 * 19 18 17 24 24 C 1.46849 * 110.99357 * 299.54497 * 16 15 13 25 25 H 1.08995 * 109.46411 * 65.82321 * 24 16 15 26 26 C 1.50700 * 109.46543 * 305.85054 * 24 16 15 27 27 O 1.20829 * 119.99858 * 330.98229 * 26 24 16 28 28 O 1.34233 * 120.00113 * 150.97368 * 26 24 16 29 29 C 1.45196 * 117.00026 * 180.02562 * 28 26 24 30 30 H 1.08994 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46873 * 299.99935 * 1 2 3 32 32 H 1.08998 * 109.47010 * 60.00219 * 1 2 3 33 33 H 1.08997 * 109.46873 * 240.00065 * 2 1 3 34 34 H 1.08998 * 109.47010 * 119.99781 * 2 1 3 35 35 H 1.09000 * 109.46927 * 149.99789 * 4 3 2 36 36 H 1.08999 * 109.47216 * 30.00082 * 4 3 2 37 37 H 0.97006 * 119.99502 * 180.02562 * 8 7 5 38 38 H 1.09009 * 109.46914 * 300.00101 * 15 13 3 39 39 H 1.08998 * 109.47145 * 60.00109 * 15 13 3 40 40 H 1.08998 * 109.46344 * 294.18241 * 17 16 15 41 41 H 1.08999 * 109.45843 * 54.15976 * 17 16 15 42 42 H 1.08994 * 109.50278 * 179.12255 * 18 17 16 43 43 H 1.09007 * 109.50147 * 299.23783 * 18 17 16 44 44 H 1.09000 * 109.46925 * 299.99398 * 22 21 19 45 45 H 1.08995 * 109.47194 * 60.00172 * 22 21 19 46 46 H 1.09002 * 109.46898 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.50268 * 177.59256 * 23 19 18 48 48 H 1.09001 * 109.51058 * 297.67440 * 23 19 18 49 49 H 1.08998 * 109.47494 * 180.02562 * 29 28 26 50 50 H 1.09004 * 109.47431 * 300.00204 * 29 28 26 51 51 H 1.08997 * 109.47689 * 59.99802 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0068 2.7823 1.7037 6 1 0.1157 2.7247 1.0961 7 6 0.9949 3.5049 2.8779 8 7 2.0798 3.5745 3.6180 9 14 -0.5615 4.3861 3.4168 10 1 -1.6546 3.3965 3.5935 11 1 -0.3144 5.0850 4.7035 12 1 -0.9531 5.3766 2.3821 13 6 2.2430 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9913 1.3064 -2.4723 16 7 2.3101 2.2061 -3.5889 17 6 3.7372 2.5521 -3.5950 18 6 4.0602 3.3683 -4.8486 19 6 3.2075 4.6400 -4.8574 20 1 3.4577 5.2524 -3.9911 21 8 3.4634 5.3782 -6.0540 22 6 4.5266 6.3258 -5.9361 23 6 1.7271 4.2529 -4.8019 24 6 1.4717 3.4111 -3.5495 25 1 1.7172 3.9955 -2.6628 26 6 0.0196 3.0112 -3.5010 27 8 -0.3382 1.9726 -4.0044 28 8 -0.8764 3.8086 -2.8984 29 6 -2.2572 3.3597 -2.8892 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.0644 2.7985 1.1383 36 1 2.5506 1.3453 2.0284 37 1 2.0714 4.0826 4.4443 38 1 2.6212 0.4186 -2.5302 39 1 0.9432 1.0126 -2.5299 40 1 3.9720 3.1405 -2.7080 41 1 4.3322 1.6389 -3.5930 42 1 5.1162 3.6382 -4.8450 43 1 3.8386 2.7753 -5.7360 44 1 4.2840 7.0491 -5.1577 45 1 5.4488 5.8065 -5.6752 46 1 4.6583 6.8441 -6.8860 47 1 1.1163 5.1549 -4.7648 48 1 1.4686 3.6745 -5.6888 49 1 -2.8748 4.0946 -2.3728 50 1 -2.6092 3.2461 -3.9145 51 1 -2.3245 2.4017 -2.3738 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373201248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:17 Heat of formation + Delta-G solvation = -170.991602 kcal Electronic energy + Delta-G solvation = -33175.352556 eV Core-core repulsion = 28881.830972 eV Total energy + Delta-G solvation = -4293.521584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.29210 -40.92448 -39.85125 -38.21523 -37.41674 -36.77322 -34.91250 -33.72644 -32.55795 -31.57799 -29.91420 -28.92103 -28.15101 -27.10541 -25.41182 -24.81328 -24.24211 -23.76504 -22.10250 -21.10717 -20.00724 -18.97385 -18.68511 -18.18389 -18.03159 -17.64482 -17.34458 -16.76755 -16.58166 -16.44798 -16.07736 -16.00505 -15.86936 -15.70446 -14.97616 -14.67430 -14.59482 -14.40873 -14.28587 -13.97757 -13.91120 -13.72605 -13.44815 -13.24853 -13.09542 -13.07075 -12.95882 -12.87776 -12.69796 -12.55335 -12.44951 -12.23335 -12.02330 -11.91174 -11.83110 -11.81604 -11.73387 -11.64488 -11.37669 -11.22681 -10.62910 -10.50060 -9.46694 -9.27962 -8.21963 -6.34551 0.96657 1.34395 1.37876 1.44750 1.53696 1.69581 2.27556 2.42151 2.67940 2.74648 3.08130 3.53625 3.60291 3.69260 3.90653 3.93167 4.03498 4.10708 4.20755 4.21817 4.26041 4.29848 4.36006 4.44367 4.46984 4.52387 4.54553 4.55469 4.57074 4.61401 4.77780 4.82914 4.86141 4.89177 4.93189 4.95280 4.99652 5.03801 5.21608 5.23630 5.26340 5.40872 5.58910 5.59789 5.78941 5.83967 6.07617 6.20786 6.62819 6.67952 6.76599 7.26710 7.42005 8.84937 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.003991 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.641487 B = 7014.931052 C = 7250.068179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 N -0.599 5.599 4 C 0.263 3.737 5 C -0.530 4.530 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.928 5.928 9 Si 0.957 3.043 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.467 3.533 14 O -0.579 6.579 15 C 0.032 3.968 16 N -0.489 5.489 17 C 0.044 3.956 18 C -0.126 4.126 19 C 0.095 3.905 20 H 0.057 0.943 21 O -0.397 6.397 22 C 0.024 3.976 23 C -0.093 4.093 24 C 0.080 3.920 25 H 0.087 0.913 26 C 0.470 3.530 27 O -0.505 6.505 28 O -0.371 6.371 29 C 0.028 3.972 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.000 1.000 36 H 0.020 0.980 37 H 0.266 0.734 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.123 0.877 50 H 0.077 0.923 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -3.223 -17.410 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.330 5.330 4 C 0.141 3.859 5 C -0.569 4.569 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.568 5.568 9 Si 0.782 3.218 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.255 3.745 14 O -0.461 6.461 15 C -0.099 4.099 16 N -0.213 5.213 17 C -0.082 4.082 18 C -0.163 4.163 19 C 0.037 3.963 20 H 0.075 0.925 21 O -0.316 6.316 22 C -0.072 4.072 23 C -0.131 4.131 24 C -0.030 4.030 25 H 0.104 0.896 26 C 0.312 3.688 27 O -0.393 6.393 28 O -0.287 6.287 29 C -0.065 4.065 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.018 0.982 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.142 0.858 50 H 0.096 0.904 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.336 -3.164 -17.987 18.266 hybrid contribution -0.588 1.062 1.975 2.318 sum -0.924 -2.102 -16.012 16.176 Atomic orbital electron populations 1.22122 0.95893 1.02821 1.01056 1.21762 0.94932 0.81299 1.04061 1.48430 1.63084 1.14912 1.06537 1.18733 0.95435 0.91493 0.80216 1.21587 0.97755 1.31364 1.06198 0.93140 1.25746 0.99475 0.96969 0.96569 1.70035 1.29437 1.42508 1.14785 0.85629 0.79879 0.78922 0.77419 1.18692 1.20455 1.20317 1.22394 0.77738 0.87122 0.87266 1.90539 1.48443 1.19533 1.87537 1.22597 1.05287 0.97523 0.84514 1.62373 1.05495 1.13575 1.39874 1.22346 0.86377 1.01265 0.98257 1.22011 1.00390 0.95672 0.98272 1.22000 0.93928 0.92921 0.87441 0.92494 1.87854 1.55066 1.54178 1.34484 1.22995 0.89402 0.91408 1.03424 1.21455 0.96931 0.99108 0.95608 1.21407 0.86035 0.93785 1.01783 0.89577 1.23630 0.89318 0.81803 0.74032 1.90594 1.80952 1.24506 1.43267 1.86553 1.21088 1.50381 1.70725 1.23560 0.76988 1.02131 1.03783 0.88897 0.93915 0.94270 0.87852 0.89988 0.98214 0.96154 0.92552 0.84364 0.87650 0.93586 0.88059 0.89397 0.89708 0.93915 0.93028 0.87836 0.89838 0.89577 0.85842 0.90433 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 10.24 71.98 0.74 -4.05 16 2 C 0.10 3.08 5.98 86.38 0.52 3.60 16 3 N -0.60 -24.65 2.46 -826.17 -2.03 -26.68 16 4 C 0.26 13.80 5.20 85.63 0.45 14.24 16 5 C -0.53 -29.90 8.92 25.60 0.23 -29.67 16 6 H 0.05 2.85 7.42 -2.91 -0.02 2.83 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.47 18.61 7.09 87.66 0.62 19.23 16 14 O -0.58 -27.33 11.19 -3.03 -0.03 -27.37 16 15 C 0.03 0.97 3.94 85.56 0.34 1.31 16 16 N -0.49 -14.48 4.46 -880.05 -3.92 -18.41 16 17 C 0.04 1.18 5.06 86.33 0.44 1.62 16 18 C -0.13 -2.81 5.71 30.65 0.18 -2.64 16 19 C 0.10 2.38 2.68 30.67 0.08 2.46 16 20 H 0.06 1.54 7.79 -2.39 -0.02 1.52 16 21 O -0.40 -9.34 10.35 -148.98 -1.54 -10.88 16 22 C 0.02 0.41 10.82 113.37 1.23 1.63 16 23 C -0.09 -2.53 5.01 30.65 0.15 -2.38 16 24 C 0.08 2.58 1.89 44.19 0.08 2.66 16 25 H 0.09 3.41 5.54 -2.39 -0.01 3.40 16 26 C 0.47 15.80 6.06 71.24 0.43 16.23 16 27 O -0.51 -17.40 14.93 21.96 0.33 -17.07 16 28 O -0.37 -12.37 10.57 -51.44 -0.54 -12.92 16 29 C 0.03 0.70 10.56 113.37 1.20 1.89 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.55 7.26 -2.39 -0.02 1.53 16 32 H 0.04 1.20 7.22 -2.39 -0.02 1.19 16 33 H 0.10 2.31 6.44 -2.39 -0.02 2.30 16 34 H 0.08 2.40 7.89 -2.39 -0.02 2.39 16 35 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 36 H 0.02 1.10 7.89 -2.39 -0.02 1.08 16 37 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 38 H 0.14 3.22 7.36 -2.38 -0.02 3.21 16 39 H 0.11 3.32 5.01 -2.39 -0.01 3.31 16 40 H 0.05 1.53 5.81 -2.39 -0.01 1.52 16 41 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 42 H 0.09 1.66 7.94 -2.39 -0.02 1.64 16 43 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.04 0.73 8.09 -2.39 -0.02 0.71 16 45 H 0.05 0.78 7.94 -2.39 -0.02 0.76 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 51 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 Total: -1.00 -73.28 401.25 2.62 -70.66 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.92 Total: 23.97 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 7.13 Total: 27.25 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -5.67 Total: -100.22 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -1.79 Total: -68.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -73.28 2.62 -70.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373201248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.328 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds