Wall clock time and date at job start Wed Apr 1 2020 04:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34834 * 125.89261 * 2 1 4 4 C 1.36437 * 107.60736 * 180.15266 * 3 2 1 5 5 C 1.48478 * 126.22059 * 179.87586 * 4 3 2 6 6 C 1.39323 * 120.11202 * 309.68404 * 5 4 3 7 7 C 1.38008 * 119.87697 * 180.02562 * 6 5 4 8 8 C 1.38329 * 120.12058 * 0.02605 * 7 6 5 9 9 C 1.38304 * 120.23611 * 359.67757 * 8 7 6 10 10 C 1.38049 * 120.11160 * 0.59834 * 9 8 7 11 11 C 1.50699 * 120.05354 * 179.70289 * 10 9 8 12 12 N 1.46497 * 109.46844 * 259.71982 * 11 10 9 13 13 C 1.34780 * 120.00113 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00065 * 180.02562 * 13 12 11 16 16 H 1.08992 * 109.47284 * 320.00375 * 15 13 12 17 17 N 1.46906 * 109.46922 * 199.99986 * 15 13 12 18 18 C 1.53002 * 109.46958 * 80.00293 * 15 13 12 19 19 C 1.53005 * 109.46814 * 184.99800 * 18 15 13 20 20 C 1.50703 * 109.46931 * 179.97438 * 19 18 15 21 21 H 1.08003 * 119.99778 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00095 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99821 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00264 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46814 * 59.99472 * 24 22 20 26 26 H 1.48499 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46815 * 299.99964 * 24 22 20 28 28 C 1.40845 * 107.55505 * 359.60203 * 4 3 2 29 29 N 1.30671 * 108.09964 * 0.25021 * 28 4 3 30 30 H 1.09005 * 109.46678 * 270.26033 * 1 2 3 31 31 H 1.08992 * 109.47456 * 30.26287 * 1 2 3 32 32 H 1.09000 * 109.46639 * 150.26369 * 1 2 3 33 33 H 1.08001 * 126.19639 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.06154 * 0.04850 * 6 5 4 35 35 H 1.07999 * 119.93871 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.88470 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.94291 * 180.32017 * 9 8 7 38 38 H 1.09002 * 109.46952 * 139.72985 * 11 10 9 39 39 H 1.08992 * 109.47820 * 19.72286 * 11 10 9 40 40 H 0.97001 * 120.00420 * 0.02562 * 12 11 10 41 41 H 1.00904 * 110.99860 * 176.04970 * 17 15 13 42 42 H 1.00902 * 110.99567 * 299.99689 * 17 15 13 43 43 H 1.09003 * 109.47073 * 304.99343 * 18 15 13 44 44 H 1.09002 * 109.47495 * 64.99775 * 18 15 13 45 45 H 1.08993 * 109.46967 * 299.99663 * 19 18 15 46 46 H 1.08997 * 109.46762 * 60.00378 * 19 18 15 47 47 H 0.96996 * 119.99918 * 180.02562 * 23 22 20 48 48 H 1.08001 * 125.94576 * 180.21802 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.0923 0.0000 4 6 3.5510 0.6643 -0.0035 5 6 4.7598 1.5263 -0.0073 6 6 4.8794 2.5583 -0.9357 7 6 6.0054 3.3563 -0.9353 8 6 7.0143 3.1328 -0.0157 9 6 6.8979 2.1136 0.9120 10 6 5.7784 1.3059 0.9166 11 6 5.6559 0.1915 1.9237 12 7 6.0069 -1.0812 1.2887 13 6 5.9684 -2.2237 2.0027 14 8 5.6427 -2.1982 3.1707 15 6 6.3301 -3.5329 1.3496 16 1 5.9212 -3.5603 0.3397 17 7 5.7717 -4.6422 2.1343 18 6 7.8528 -3.6681 1.2873 19 6 8.2209 -4.9362 0.5143 20 6 9.7207 -5.0691 0.4523 21 1 10.3486 -4.3235 0.9173 22 6 10.2914 -6.1420 -0.1990 23 7 9.5268 -7.0497 -0.7657 24 14 12.1505 -6.3065 -0.2765 25 1 12.6978 -6.3906 1.1014 26 1 12.5078 -7.5373 -1.0266 27 1 12.7238 -5.1224 -0.9654 28 6 3.5330 -0.7441 0.0037 29 7 2.2859 -1.1342 0.0057 30 1 -0.3633 0.0047 1.0277 31 1 -0.3634 0.8875 -0.5179 32 1 -0.3632 -0.8924 -0.5097 33 1 1.9233 2.1200 0.0004 34 1 4.0924 2.7337 -1.6540 35 1 6.0990 4.1568 -1.6542 36 1 7.8940 3.7593 -0.0191 37 1 7.6861 1.9466 1.6310 38 1 4.6304 0.1440 2.2900 39 1 6.3315 0.3798 2.7580 40 1 6.2671 -1.1017 0.3545 41 1 5.9452 -5.5277 1.6829 42 1 6.1357 -4.6386 3.0754 43 1 8.2743 -2.7993 0.7817 44 1 8.2539 -3.7300 2.2989 45 1 7.7994 -5.8050 1.0197 46 1 7.8199 -4.8742 -0.4974 47 1 9.9283 -7.8047 -1.2235 48 1 4.3993 -1.3891 0.0065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424166733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:15 Heat of formation + Delta-G solvation = 60.471641 kcal Electronic energy + Delta-G solvation = -29327.090472 eV Core-core repulsion = 25383.207558 eV Total energy + Delta-G solvation = -3943.882914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47636 -39.79535 -39.01245 -35.58603 -34.89043 -33.62392 -32.81157 -32.08556 -31.46147 -29.83762 -29.26365 -27.34105 -26.73314 -25.52530 -23.54548 -23.02505 -21.89302 -20.94035 -20.65158 -20.27791 -19.74350 -17.68260 -17.25105 -16.33686 -16.19180 -15.93055 -15.82223 -15.47086 -15.11284 -14.72733 -14.52312 -14.41301 -14.25242 -13.94324 -13.70073 -13.36895 -13.11955 -13.09464 -13.00978 -12.87389 -12.74257 -12.53562 -12.39796 -12.08039 -11.65168 -11.45233 -11.23252 -11.04273 -10.88011 -10.77148 -10.68401 -9.94443 -9.90677 -9.62144 -9.41727 -9.31523 -9.21708 -8.97000 -8.87067 -8.40634 -8.22852 -8.10486 -6.05331 -4.08374 0.95170 1.15316 1.75600 2.30342 2.66411 3.00157 3.28976 3.30628 3.35363 3.37866 3.76981 4.25657 4.42043 4.52629 4.58024 4.67715 4.73708 4.83398 4.86217 5.00061 5.09848 5.14341 5.17117 5.25324 5.30836 5.30962 5.44534 5.53045 5.63566 5.65531 5.71245 5.82098 5.86837 5.89915 6.21928 6.30682 6.33582 6.44826 6.48291 6.53441 6.57516 6.74902 6.78954 6.91993 7.48714 7.53932 7.55822 7.65802 7.75299 7.91818 7.97271 8.34584 8.51942 8.97416 9.56256 11.05553 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.002782 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.797121 B =10061.307480 C =11421.590432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.376 5.376 3 C 0.069 3.931 4 C -0.209 4.209 5 C 0.018 3.982 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.126 4.126 9 C -0.095 4.095 10 C -0.099 4.099 11 C 0.166 3.834 12 N -0.731 5.731 13 C 0.525 3.475 14 O -0.535 6.535 15 C 0.075 3.925 16 H 0.095 0.905 17 N -0.829 5.829 18 C -0.137 4.137 19 C 0.025 3.975 20 C -0.524 4.524 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.070 3.930 29 N -0.288 5.288 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.402 0.598 41 H 0.354 0.646 42 H 0.345 0.655 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.262 0.738 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.373 22.926 -0.962 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.157 5.157 3 C -0.078 4.078 4 C -0.220 4.220 5 C 0.016 3.984 6 C -0.135 4.135 7 C -0.129 4.129 8 C -0.145 4.145 9 C -0.113 4.113 10 C -0.100 4.100 11 C 0.043 3.957 12 N -0.385 5.385 13 C 0.312 3.688 14 O -0.410 6.410 15 C -0.040 4.040 16 H 0.113 0.887 17 N -0.361 5.361 18 C -0.177 4.177 19 C -0.013 4.013 20 C -0.562 4.562 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.117 4.117 29 N -0.108 5.108 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.192 0.808 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.237 0.763 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.328 22.077 -0.310 28.067 hybrid contribution 2.742 0.340 -0.540 2.815 sum -14.586 22.416 -0.850 26.758 Atomic orbital electron populations 1.21870 0.74131 1.04518 1.03496 1.48468 1.06799 1.03877 1.56525 1.22483 0.90475 0.93320 1.01512 1.18797 0.91913 0.93012 1.18309 1.17938 0.91897 0.94058 0.94499 1.21159 0.98331 0.95533 0.98435 1.21100 0.93854 0.99285 0.98668 1.21163 0.99110 0.98337 0.95845 1.21061 0.96765 0.94840 0.98662 1.19919 0.94768 0.97938 0.97352 1.20045 1.01606 0.80643 0.93408 1.46254 1.70832 1.06465 1.14983 1.20920 0.75720 0.85300 0.86832 1.90636 1.46725 1.86912 1.16734 1.21482 0.96052 0.88915 0.97589 0.88681 1.58734 1.65063 1.05839 1.06499 1.22383 0.91549 1.02161 1.01604 1.19096 0.96568 0.90686 0.94900 1.21149 0.91821 1.08255 1.34974 0.92784 1.25007 0.98117 0.95792 0.95375 1.69940 1.35032 1.12243 1.35988 0.86651 0.85721 0.77423 0.78186 1.20246 1.21241 1.20221 1.24419 0.95359 0.94112 0.97799 1.77412 1.01832 1.07551 1.24014 0.90668 0.89542 0.89079 0.80838 0.86057 0.86028 0.85965 0.85627 0.90737 0.90989 0.76312 0.83071 0.84195 0.92497 0.92691 0.96403 0.96309 0.92846 0.79644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.46 59.85 0.69 1.28 16 2 N -0.38 -3.90 4.00 -67.89 -0.27 -4.17 16 3 C 0.07 0.64 11.36 -16.88 -0.19 0.44 16 4 C -0.21 -2.30 4.79 -105.34 -0.50 -2.81 16 5 C 0.02 0.18 5.75 -104.89 -0.60 -0.42 16 6 C -0.12 -1.00 9.71 -39.26 -0.38 -1.39 16 7 C -0.11 -0.88 10.03 -39.63 -0.40 -1.28 16 8 C -0.13 -1.06 10.04 -39.52 -0.40 -1.46 16 9 C -0.09 -0.90 9.66 -39.63 -0.38 -1.29 16 10 C -0.10 -1.05 5.27 -104.31 -0.55 -1.60 16 11 C 0.17 2.05 4.87 -5.20 -0.03 2.02 16 12 N -0.73 -9.73 3.27 -61.48 -0.20 -9.93 16 13 C 0.53 8.82 6.88 -10.98 -0.08 8.74 16 14 O -0.53 -10.67 16.25 5.55 0.09 -10.58 16 15 C 0.07 1.30 3.21 -68.86 -0.22 1.08 16 16 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 17 N -0.83 -14.78 8.94 -5.65 -0.05 -14.83 16 18 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 19 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 20 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 21 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 24 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.07 0.93 10.29 -17.06 -0.18 0.75 16 29 N -0.29 -4.05 12.54 30.80 0.39 -3.66 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 1.08 8.03 -52.49 -0.42 0.66 16 38 H 0.07 1.03 7.20 -51.93 -0.37 0.65 16 39 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 40 H 0.40 4.78 7.72 -40.82 -0.32 4.47 16 41 H 0.35 6.32 7.55 -39.29 -0.30 6.02 16 42 H 0.34 6.22 8.58 -39.29 -0.34 5.88 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.19 2.46 5.09 -52.49 -0.27 2.20 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -34.71 400.87 -9.16 -43.87 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.98 Total: 13.87 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.89 Total: -11.52 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.60 Total: -58.10 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.71 -9.16 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424166733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.339 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds