Wall clock time and date at job start Wed Apr 1 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46493 * 119.99811 * 89.99895 * 3 2 1 5 5 C 1.50706 * 109.47492 * 90.00399 * 4 3 2 6 6 H 1.08004 * 119.99292 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00653 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00304 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99713 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46978 * 89.99897 * 9 7 5 11 11 H 1.48497 * 109.46747 * 209.99718 * 9 7 5 12 12 H 1.48502 * 109.47216 * 329.99707 * 9 7 5 13 13 C 1.34778 * 120.00058 * 270.00324 * 3 2 1 14 14 O 1.21273 * 119.99770 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99918 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47231 * 179.97438 * 15 13 3 17 17 C 1.46847 * 110.99922 * 294.21399 * 16 15 13 18 18 C 1.53043 * 109.51889 * 174.15696 * 17 16 15 19 19 C 1.53119 * 109.27605 * 59.18190 * 18 17 16 20 20 C 1.53008 * 109.57170 * 182.40673 * 19 18 17 21 21 H 1.08999 * 109.46924 * 179.71190 * 20 19 18 22 22 O 1.42898 * 109.46946 * 59.71249 * 20 19 18 23 23 C 1.50697 * 109.46950 * 299.70972 * 20 19 18 24 24 O 1.20833 * 119.99675 * 115.00116 * 23 20 19 25 25 O 1.34221 * 120.00291 * 295.00085 * 23 20 19 26 26 C 1.45205 * 117.00231 * 180.02562 * 25 23 20 27 27 C 1.53123 * 109.15990 * 302.33942 * 19 18 17 28 28 C 1.46845 * 111.00049 * 170.00049 * 16 15 13 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 31 31 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 33 33 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 34 34 H 1.09006 * 109.47571 * 210.00074 * 4 3 2 35 35 H 1.09005 * 109.47727 * 330.00531 * 4 3 2 36 36 H 0.97002 * 120.00034 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47545 * 300.00776 * 15 13 3 38 38 H 1.09008 * 109.47188 * 60.00003 * 15 13 3 39 39 H 1.08999 * 109.46101 * 294.17167 * 17 16 15 40 40 H 1.08999 * 109.46554 * 54.14229 * 17 16 15 41 41 H 1.08995 * 109.50482 * 299.24022 * 18 17 16 42 42 H 1.09004 * 109.52980 * 179.13499 * 18 17 16 43 43 H 1.08997 * 109.52445 * 62.24631 * 19 18 17 44 44 H 0.96704 * 114.00118 * 299.99610 * 22 20 19 45 45 H 1.08999 * 109.47427 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47147 * 300.00505 * 26 25 23 47 47 H 1.09007 * 109.47010 * 59.99876 * 26 25 23 48 48 H 1.08994 * 109.49986 * 297.71815 * 27 19 18 49 49 H 1.08997 * 109.50165 * 177.59947 * 27 19 18 50 50 H 1.08996 * 109.46401 * 305.86101 * 28 16 15 51 51 H 1.08999 * 109.46199 * 65.83710 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3429 1.2309 1.0957 7 6 4.1495 2.3905 2.8774 8 7 5.3914 2.1834 3.2573 9 14 3.0131 3.4359 3.9288 10 1 2.3083 2.5698 4.9078 11 1 3.8105 4.4566 4.6550 12 1 2.0172 4.1123 3.0593 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1602 -1.1671 15 6 1.9923 1.3061 -2.4723 16 7 2.3097 2.2063 -3.5889 17 6 1.3865 3.3477 -3.6234 18 6 1.8341 4.3350 -4.7038 19 6 1.8501 3.6262 -6.0609 20 6 2.3541 4.5903 -7.1368 21 1 2.3696 4.0825 -8.1012 22 8 3.6746 5.0249 -6.8060 23 6 1.4365 5.7833 -7.2119 24 8 1.8468 6.8806 -6.9158 25 8 0.1636 5.6271 -7.6078 26 6 -0.6627 6.8201 -7.6569 27 6 2.7816 2.4134 -5.9836 28 6 2.3065 1.4819 -4.8662 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0956 3.1411 1.1385 35 1 1.5817 1.6877 2.0284 36 1 5.7174 2.5739 4.0833 37 1 2.6226 0.4187 -2.5299 38 1 0.9443 1.0115 -2.5302 39 1 0.3803 2.9943 -3.8488 40 1 1.3878 3.8454 -2.6537 41 1 2.8349 4.6993 -4.4717 42 1 1.1403 5.1749 -4.7400 43 1 0.8420 3.2958 -6.3112 44 1 3.7361 5.4861 -5.9582 45 1 -1.6655 6.5542 -7.9912 46 1 -0.7174 7.2654 -6.6635 47 1 -0.2255 7.5365 -8.3525 48 1 3.7972 2.7476 -5.7717 49 1 2.7642 1.8800 -6.9340 50 1 2.9760 0.6244 -4.7990 51 1 1.2960 1.1374 -5.0858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441261054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:59 Heat of formation + Delta-G solvation = -189.520198 kcal Electronic energy + Delta-G solvation = -31469.684398 eV Core-core repulsion = 27175.359353 eV Total energy + Delta-G solvation = -4294.325044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96278 -41.02632 -39.78029 -38.16372 -37.23762 -36.83416 -34.91229 -34.36242 -31.94114 -31.77900 -30.73420 -29.72250 -28.36345 -26.95466 -24.51803 -24.34249 -24.16527 -23.22303 -21.96638 -20.63634 -19.82559 -19.15064 -19.08171 -18.44025 -17.95947 -17.68868 -17.32906 -16.95952 -16.64537 -16.29151 -16.13827 -15.74299 -15.58338 -15.14128 -14.97414 -14.71771 -14.60209 -14.49075 -14.30635 -14.07456 -13.80173 -13.76023 -13.47128 -13.29873 -13.19269 -13.03605 -12.93835 -12.77071 -12.60654 -12.54773 -12.35258 -12.13466 -12.04092 -11.90216 -11.87657 -11.76797 -11.74977 -11.65120 -11.31883 -10.91091 -10.82149 -10.45746 -9.38878 -9.14134 -8.33778 -6.38158 0.99446 1.29816 1.35002 1.45375 1.61540 1.86747 2.24981 2.30704 2.98749 3.01285 3.11121 3.51212 3.60128 3.70524 3.72286 3.98299 4.10734 4.19125 4.24371 4.25512 4.27378 4.28818 4.36528 4.44458 4.48535 4.51184 4.59563 4.64435 4.66436 4.71113 4.79188 4.80624 4.92846 4.96842 5.00431 5.02756 5.04580 5.14227 5.15698 5.25441 5.39167 5.47928 5.49011 5.69330 6.01530 6.24461 6.27201 6.29012 6.61788 6.63385 6.78954 7.23178 7.52205 8.83391 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.002580 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.683716 B =10850.353025 C =11409.806886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.250 1.250 11 H -0.283 1.283 12 H -0.258 1.258 13 C 0.496 3.504 14 O -0.577 6.577 15 C 0.053 3.947 16 N -0.546 5.546 17 C 0.062 3.938 18 C -0.112 4.112 19 C -0.103 4.103 20 C 0.129 3.871 21 H 0.167 0.833 22 O -0.542 6.542 23 C 0.433 3.567 24 O -0.537 6.537 25 O -0.354 6.354 26 C 0.026 3.974 27 C -0.101 4.101 28 C 0.056 3.944 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.016 0.984 35 H 0.044 0.956 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.110 0.890 44 H 0.387 0.613 45 H 0.135 0.865 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.103 0.897 50 H 0.087 0.913 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.474 -3.089 -24.168 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.174 1.174 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.077 4.077 16 N -0.271 5.271 17 C -0.066 4.066 18 C -0.150 4.150 19 C -0.122 4.122 20 C 0.069 3.931 21 H 0.184 0.816 22 O -0.349 6.349 23 C 0.277 3.723 24 O -0.427 6.427 25 O -0.270 6.270 26 C -0.067 4.067 27 C -0.138 4.138 28 C -0.071 4.071 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.128 0.872 44 H 0.238 0.762 45 H 0.153 0.847 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.449 -2.217 -24.432 29.537 hybrid contribution -0.547 1.137 1.656 2.081 sum -16.996 -1.081 -22.777 28.440 Atomic orbital electron populations 1.22147 0.94032 1.03600 1.01923 1.21766 0.95531 0.81185 1.03935 1.48087 1.64545 1.15221 1.05757 1.19221 0.94544 0.92944 0.82755 1.21568 0.97141 1.31831 1.06531 0.95395 1.25851 0.96717 0.97202 0.99039 1.70054 1.17466 1.46678 1.24447 0.85718 0.79128 0.79123 0.79015 1.17427 1.20858 1.18195 1.21284 0.77082 0.86771 0.86389 1.90610 1.46783 1.20565 1.87691 1.21949 1.02574 0.95705 0.87509 1.61436 1.53110 1.09308 1.03292 1.22001 0.93121 0.92134 0.99350 1.21576 1.01342 0.97406 0.94638 1.21851 1.02192 0.95589 0.92528 1.21829 0.80393 0.88159 1.02759 0.81567 1.86599 1.25416 1.78111 1.44809 1.25398 0.82554 0.92080 0.72255 1.90693 1.76454 1.29150 1.46414 1.86503 1.22609 1.39876 1.78048 1.23556 0.95065 0.85585 1.02513 1.21551 0.98946 0.94383 0.98957 1.22224 1.01258 0.96440 0.87136 0.88704 0.93659 0.92137 0.88513 0.91136 0.96635 0.93789 0.92335 0.86482 0.89371 0.93680 0.92476 0.92459 0.92540 0.87164 0.76187 0.84690 0.92571 0.92002 0.91907 0.87831 0.89447 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 71.98 0.74 -2.55 16 2 C 0.10 2.75 5.93 86.38 0.51 3.26 16 3 N -0.60 -24.17 2.46 -826.14 -2.03 -26.20 16 4 C 0.23 11.24 4.23 85.64 0.36 11.60 16 5 C -0.53 -31.79 9.94 25.60 0.25 -31.54 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.58 5.47 84.65 0.46 1.04 16 8 N -0.95 -60.79 13.96 21.44 0.30 -60.49 16 9 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 10 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 13 C 0.50 19.81 7.35 87.66 0.64 20.46 16 14 O -0.58 -29.07 13.91 -3.01 -0.04 -29.11 16 15 C 0.05 1.41 4.00 85.56 0.34 1.75 16 16 N -0.55 -14.28 4.40 -900.93 -3.96 -18.24 16 17 C 0.06 1.63 5.11 86.33 0.44 2.07 16 18 C -0.11 -2.55 4.83 30.65 0.15 -2.40 16 19 C -0.10 -1.57 2.13 -10.71 -0.02 -1.60 16 20 C 0.13 2.06 3.30 29.85 0.10 2.16 16 21 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 22 O -0.54 -11.45 12.24 -129.95 -1.59 -13.04 16 23 C 0.43 8.71 6.08 71.23 0.43 9.14 16 24 O -0.54 -14.76 16.07 28.36 0.46 -14.31 16 25 O -0.35 -5.77 10.56 -51.33 -0.54 -6.31 16 26 C 0.03 0.32 10.56 113.37 1.20 1.52 16 27 C -0.10 -1.50 5.26 30.65 0.16 -1.34 16 28 C 0.06 0.94 5.46 86.33 0.47 1.41 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.14 7.22 -2.39 -0.02 1.12 16 32 H 0.10 2.11 6.44 -2.39 -0.02 2.09 16 33 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 34 H 0.02 0.84 6.48 -2.38 -0.02 0.83 16 35 H 0.04 1.98 7.50 -2.38 -0.02 1.96 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.12 2.68 7.25 -2.39 -0.02 2.66 16 38 H 0.09 1.77 7.17 -2.38 -0.02 1.75 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 2.02 5.78 -2.39 -0.01 2.01 16 41 H 0.06 1.55 6.67 -2.39 -0.02 1.53 16 42 H 0.06 1.30 7.33 -2.39 -0.02 1.28 16 43 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.39 8.31 7.03 -74.05 -0.52 7.79 16 45 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 47 H 0.06 0.78 8.13 -2.38 -0.02 0.76 16 48 H 0.06 1.26 7.62 -2.39 -0.02 1.24 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.09 1.33 8.02 -2.39 -0.02 1.31 16 51 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -85.91 402.04 1.07 -84.84 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.35 Total: 20.72 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 6.24 Total: 14.97 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -5.69 Total: -104.93 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -1.72 Total: -62.76 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -85.91 1.07 -84.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441261054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.681 kcal (2) G-P(sol) polarization free energy of solvation -85.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds