Wall clock time and date at job start Wed Apr 1 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47325 * 2 1 4 4 C 1.34232 * 117.00370 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99761 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00139 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.49699 * 299.93843 * 6 4 3 8 8 C 1.53036 * 109.52487 * 179.85571 * 6 4 3 9 9 C 1.53037 * 109.53974 * 178.66739 * 8 6 4 10 10 C 1.52765 * 109.38346 * 61.24002 * 9 8 6 11 11 N 1.46927 * 109.00487 * 305.58771 * 10 9 8 12 12 C 1.34772 * 120.63050 * 233.57950 * 11 10 9 13 13 O 1.21280 * 120.00387 * 179.71751 * 12 11 10 14 14 C 1.50710 * 120.00012 * 359.72948 * 12 11 10 15 15 N 1.46497 * 109.46921 * 179.97438 * 14 12 11 16 16 C 1.36938 * 120.00129 * 86.90440 * 15 14 12 17 17 H 1.08001 * 119.99939 * 209.22987 * 16 15 14 18 18 C 1.38818 * 119.99946 * 29.23211 * 16 15 14 19 19 N 1.31618 * 119.99676 * 41.96806 * 18 16 15 20 20 Si 1.86798 * 119.99618 * 221.69289 * 18 16 15 21 21 H 1.48497 * 109.47030 * 265.27742 * 20 18 16 22 22 H 1.48497 * 109.47450 * 25.27814 * 20 18 16 23 23 H 1.48501 * 109.46783 * 145.27936 * 20 18 16 24 24 C 1.46500 * 119.99703 * 266.90043 * 15 14 12 25 25 C 1.53001 * 109.46999 * 270.00276 * 24 15 14 26 26 O 1.42892 * 109.47263 * 65.00322 * 25 24 15 27 27 C 1.42897 * 114.00380 * 180.02562 * 26 25 24 28 28 C 1.46930 * 118.73934 * 53.30913 * 11 10 9 29 29 H 1.08997 * 109.46801 * 60.00319 * 1 2 3 30 30 H 1.08996 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46823 * 300.00340 * 1 2 3 32 32 H 1.09005 * 109.47260 * 240.00153 * 2 1 3 33 33 H 1.09001 * 109.47329 * 120.00196 * 2 1 3 34 34 H 1.09000 * 109.45942 * 298.69011 * 8 6 4 35 35 H 1.09007 * 109.46207 * 58.64558 * 8 6 4 36 36 H 1.08998 * 109.49975 * 181.31703 * 9 8 6 37 37 H 1.09007 * 109.49831 * 301.37920 * 9 8 6 38 38 H 1.08998 * 109.51060 * 185.70992 * 10 9 8 39 39 H 1.08998 * 109.43337 * 65.42518 * 10 9 8 40 40 H 1.08991 * 109.47057 * 59.99538 * 14 12 11 41 41 H 1.09000 * 109.46556 * 299.99203 * 14 12 11 42 42 H 0.96998 * 120.00402 * 359.72623 * 19 18 16 43 43 H 1.08999 * 109.47572 * 30.00445 * 24 15 14 44 44 H 1.09004 * 109.47085 * 150.00699 * 24 15 14 45 45 H 1.09007 * 109.47018 * 185.00283 * 25 24 15 46 46 H 1.09005 * 109.47199 * 305.00228 * 25 24 15 47 47 H 1.09002 * 109.47592 * 59.99432 * 27 26 25 48 48 H 1.08993 * 109.47824 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.47030 * 300.00124 * 27 26 25 50 50 H 1.09004 * 109.58025 * 66.43161 * 28 11 10 51 51 H 1.08996 * 109.58275 * 186.70995 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5864 3.4691 -0.8909 8 6 5.4491 2.8588 0.0044 9 6 6.0345 4.2723 -0.0297 10 6 5.5858 5.0371 1.2143 11 7 4.1197 4.9926 1.3004 12 6 3.4040 6.1284 1.4180 13 8 2.1939 6.0788 1.4830 14 6 4.1072 7.4604 1.4684 15 7 3.1159 8.5314 1.5965 16 6 2.6720 8.9088 2.8358 17 1 1.6757 9.3088 2.9538 18 6 3.5025 8.7773 3.9403 19 7 4.7746 9.1025 3.8495 20 14 2.8128 8.1462 5.5575 21 1 2.4332 9.2966 6.4163 22 1 1.6146 7.3101 5.2920 23 1 3.8423 7.3301 6.2497 24 6 2.5996 9.1987 0.3989 25 6 3.4818 10.4037 0.0662 26 8 4.7908 9.9527 -0.2871 27 6 5.6990 11.0054 -0.6173 28 6 3.4484 3.6866 1.2498 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.7839 2.3488 0.9077 35 1 5.7868 2.3046 -0.8715 36 1 7.1228 4.2151 -0.0501 37 1 5.6807 4.7913 -0.9207 38 1 5.9163 6.0733 1.1436 39 1 6.0182 4.5731 2.1008 40 1 4.6801 7.6037 0.5523 41 1 4.7804 7.4836 2.3253 42 1 5.1327 9.4303 3.0097 43 1 2.6075 8.5005 -0.4381 44 1 1.5790 9.5351 0.5818 45 1 3.0481 10.9516 -0.7705 46 1 3.5453 11.0585 0.9353 47 1 5.8085 11.6724 0.2379 48 1 6.6695 10.5810 -0.8741 49 1 5.3115 11.5661 -1.4679 50 1 3.7029 3.1103 2.1394 51 1 2.3691 3.8321 1.2052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459544759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:48 Heat of formation + Delta-G solvation = -165.260477 kcal Electronic energy + Delta-G solvation = -31927.708500 eV Core-core repulsion = 27634.435436 eV Total energy + Delta-G solvation = -4293.273064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -41.93880 -40.85877 -39.01877 -38.42793 -37.62395 -36.90755 -34.10972 -33.54929 -32.95806 -32.18906 -30.71395 -28.66239 -27.03611 -26.37272 -25.89893 -24.66608 -23.97789 -22.80920 -22.39616 -21.27394 -20.16828 -19.18032 -18.76174 -18.16808 -17.79111 -17.35813 -17.23744 -17.00209 -16.65000 -16.29902 -15.98164 -15.60088 -15.56865 -15.47693 -15.17015 -15.12431 -14.75999 -14.56316 -14.28282 -13.99207 -13.82474 -13.61611 -13.57612 -13.11441 -12.97204 -12.77983 -12.67506 -12.64066 -12.57715 -12.51958 -12.41862 -12.02918 -11.99494 -11.98952 -11.82728 -11.69234 -11.66310 -11.56966 -11.54329 -10.74426 -10.48170 -10.24702 -9.62292 -8.85517 -8.36976 -5.28050 0.97724 1.51312 1.55288 1.59096 1.80879 1.84889 2.09660 2.59916 3.01418 3.10884 3.46806 3.51051 3.59513 3.67323 3.96731 3.98928 4.01651 4.03189 4.09868 4.13333 4.30182 4.36926 4.41564 4.47175 4.52013 4.56473 4.59387 4.62449 4.68270 4.72758 4.76042 4.81884 4.82664 4.87229 4.89162 4.90194 4.95212 5.04792 5.06538 5.10606 5.16104 5.33242 5.39131 5.61156 5.97164 6.36738 6.39068 6.48090 6.59641 7.04118 7.40717 7.79180 8.24317 8.89382 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.003393 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.140357 B = 8251.265644 C = 9174.887269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.477 3.523 5 O -0.525 6.525 6 C -0.087 4.087 7 H 0.116 0.884 8 C -0.096 4.096 9 C -0.121 4.121 10 C 0.099 3.901 11 N -0.618 5.618 12 C 0.488 3.512 13 O -0.570 6.570 14 C 0.143 3.857 15 N -0.575 5.575 16 C -0.370 4.370 17 H 0.029 0.971 18 C -0.043 4.043 19 N -0.894 5.894 20 Si 1.080 2.920 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.057 3.943 26 O -0.403 6.403 27 C 0.031 3.969 28 C 0.124 3.876 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.264 0.736 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.024 0.976 47 H 0.028 0.972 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.070 0.930 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -12.342 -11.891 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.320 3.680 5 O -0.414 6.414 6 C -0.107 4.107 7 H 0.134 0.866 8 C -0.134 4.134 9 C -0.159 4.159 10 C -0.023 4.023 11 N -0.354 5.354 12 C 0.276 3.724 13 O -0.448 6.448 14 C 0.012 3.988 15 N -0.295 5.295 16 C -0.499 4.499 17 H 0.047 0.953 18 C -0.245 4.245 19 N -0.532 5.532 20 Si 0.907 3.093 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.207 1.207 24 C 0.025 3.975 25 C -0.022 4.022 26 O -0.322 6.322 27 C -0.066 4.066 28 C 0.000 4.000 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.439 -13.164 -10.270 16.873 hybrid contribution -0.784 0.646 -1.261 1.619 sum 1.655 -12.518 -11.531 17.100 Atomic orbital electron populations 1.21843 0.90921 1.04425 1.03441 1.23326 0.96862 0.78974 1.02887 1.86576 1.24235 1.34134 1.83320 1.23680 0.80643 0.92327 0.71346 1.90632 1.60841 1.43538 1.46396 1.21472 0.98549 0.89038 1.01597 0.86570 1.21425 0.89723 0.97959 1.04257 1.21829 1.02709 0.94064 0.97325 1.21907 0.77985 1.02706 0.99718 1.48432 1.08131 1.04978 1.73853 1.23058 0.88202 0.87360 0.73814 1.90555 1.16273 1.87456 1.50506 1.20776 0.92219 0.83727 1.02066 1.43506 1.49385 1.34466 1.02097 1.19670 0.97349 1.46519 0.86332 0.95268 1.26437 0.95588 0.98829 1.03626 1.70901 1.17056 1.38347 1.26936 0.83344 0.74974 0.77088 0.73888 1.20505 1.22580 1.20694 1.21011 0.95219 0.92675 0.88612 1.23124 0.83823 0.97913 0.97369 1.87815 1.22134 1.33689 1.88596 1.22819 0.93973 0.91004 0.98779 1.21270 0.98677 0.83939 0.96066 0.91450 0.87725 0.91980 0.90574 0.91102 0.90864 0.89572 0.87060 0.90946 0.89483 0.90531 0.89346 0.90707 0.92635 0.93052 0.92534 0.91936 0.95785 0.95372 0.88436 0.92847 0.91218 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.29 71.98 0.74 -1.41 16 2 C 0.05 1.00 6.19 71.98 0.45 1.44 16 3 O -0.37 -9.20 10.15 -51.43 -0.52 -9.72 16 4 C 0.48 12.19 7.26 71.24 0.52 12.71 16 5 O -0.52 -14.85 15.73 21.97 0.35 -14.50 16 6 C -0.09 -2.08 2.78 -11.47 -0.03 -2.11 16 7 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 8 C -0.10 -1.90 4.46 30.62 0.14 -1.76 16 9 C -0.12 -2.25 6.06 30.53 0.19 -2.06 16 10 C 0.10 2.55 6.31 86.22 0.54 3.10 16 11 N -0.62 -20.92 2.98 -819.73 -2.44 -23.36 16 12 C 0.49 21.54 7.75 87.66 0.68 22.22 16 13 O -0.57 -29.77 15.81 -3.03 -0.05 -29.82 16 14 C 0.14 6.50 3.74 85.64 0.32 6.82 16 15 N -0.58 -29.09 1.81 -706.33 -1.28 -30.37 16 16 C -0.37 -21.18 9.23 84.03 0.78 -20.41 16 17 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 18 C -0.04 -2.41 4.46 84.86 0.38 -2.03 16 19 N -0.89 -51.39 12.40 21.65 0.27 -51.12 16 20 Si 1.08 52.76 30.06 68.60 2.06 54.82 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 C 0.15 6.50 6.06 86.38 0.52 7.03 16 25 C 0.06 2.13 6.28 71.98 0.45 2.58 16 26 O -0.40 -14.73 9.58 -148.98 -1.43 -16.16 16 27 C 0.03 0.84 11.01 113.37 1.25 2.09 16 28 C 0.12 3.76 5.65 86.36 0.49 4.25 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.31 8.13 -2.38 -0.02 1.29 16 33 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 34 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.09 1.54 8.07 -2.38 -0.02 1.52 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.09 2.38 5.93 -2.39 -0.01 2.37 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 3.64 6.71 -2.39 -0.02 3.62 16 41 H 0.08 3.75 5.48 -2.39 -0.01 3.74 16 42 H 0.26 15.32 7.90 -92.71 -0.73 14.59 16 43 H 0.05 2.09 8.07 -2.39 -0.02 2.08 16 44 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 45 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.08 2.77 7.00 -2.39 -0.02 2.75 16 Total: -1.00 -73.90 412.89 5.30 -68.60 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.94 Total: 19.18 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: 7.40 Total: 32.46 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -3.45 Total: -104.86 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -1.65 Total: -70.21 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.06 Total: 54.82 kcal Total: -73.90 5.30 -68.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459544759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.657 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds